BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36010.2
Length=1935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482574 jgi|Araly1|482574|fgenesh2_kg.4__1634__AT2G36010.3 1358 0.0
Ahg952629 jgi|Araly1|952629|scaffold_97000002.1 481 1e-134
> Ahg482574 jgi|Araly1|482574|fgenesh2_kg.4__1634__AT2G36010.3
Length=1901
Score = 1358 bits (735), Expect = 0.0
Identities = 863/920 (94%), Gaps = 28/920 (3%)
Strand=Plus/Plus
Query 1035 AATCAG--ATGGCTTTTTGTAACTGAAGAGGATATCAAGAGTTTACCAGGTTTCCAGAAC 1092
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 AATCAGAAATGGCTTTTTGTAACTGAAGAGGATATCAAGAGTTTACCAGGTTTCCAGAAC 1049
Query 1093 CAGACTCTGATAGCCGTCAAAGCTCCTCATGGCACAACTTTGGAAGTGCCTGATCCAGAT 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 CAGACTCTGATAGCCGTCAAAGCTCCTCATGGCACAACTTTGGAAGTGCCTGATCCAGAT 1109
Query 1153 GAAGCGGCTGACCACCCACAAAGGAGATACAGGATCATTCTTAGAAGTACAATGGGACCT 1212
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 GAAGCGGTTGACCACCCCCAAAGGAGATACAGGATCATTCTTAGAAGTACAATGGGACCT 1169
Query 1213 ATTGACGTATACCTCGTCAGCGAATTTGAAGGGAAATTCGAAGACACAAATGGGAGTGGT 1272
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1170 ATTGACGTATACCTCGTCAGCGAATTTGAAGGGAAATTCGAAGACACAAATGGGAGTGTT 1229
Query 1273 GCAGCACCACCAGCATGCTTGCCTATTGCTTCTAGCTCAGGATCTACAGGACACCATGAC 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 GCAGCACCACCAGCATGCTTGCCTATTGCTTCTAGCTCAGGATCTACAGGACACCATGAC 1289
Query 1333 ATCGAAGCCTTAACTGTTGACAACCCAGAAACTGCTATTG----T--G-T--CTCATGAT 1383
|||||||||||||||||||| ||| ||| ||||||||||| | | | ||||||||
Sbjct 1290 ATCGAAGCCTTAACTGTTGATAACACAGGAACTGCTATTGAGCATCAGGTGTCTCATGAT 1349
Query 1384 CATCCTCATCCTCAACCCGGCGATACCTCTGATCTTAATTATTTGCAAGAGCAAGTAGGA 1443
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1350 CATCCTCAACCTCAACCCGGCGATACCTCTGAACTTAATTATTTGCAGGAGCAGGTAGGA 1409
Query 1444 GGAATGCTTAAGATTACTCCCTCTGATGTTGAAAATGATGAGTCGGACTACTGGCTTCTC 1503
|||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||
Sbjct 1410 GGAATGCTTAAGATTACTCCCTCTGACGTCGAAAATGATGAATCGGACTACTGGCTACTC 1469
Query 1504 TCAAATGCTGAGATTAGCATGACGGATATTTGGAAAACTGACTCTGGTATCGATTGGGAT 1563
|||| |||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 1470 TCAAGTGCTGAAATTAGCATGACAGATATATGGAAAACCGACTCTGGTATCGATTGGGAT 1529
Query 1564 TATGGAATAGCCGACGTGAGTACTCCACCACCAGGAATGGGCGAAATAGCACCAACAGCT 1623
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1530 TATGGAATAGCCGACGTGAGTACTCCACCACCAGGAATGGGCGAAATAGCACCAACCGCT 1589
Query 1624 GTTGACTCAACCCCGAGATGATCGAATACCAAGCACACTTCTCAACTTCTGATCCCAAAT 1683
||||||||||||||||| ||||| |||||||| |||| | || | |||||| |||||
Sbjct 1590 GTTGACTCAACCCCGAGGTGATCCAATACCAAACACA-T-CT----T-CTGATCGCAAAT 1642
Query 1684 GTGTTACCTCACAACACTCCCTAAAATCATATACAAGGAGGGAGCAACTACAGAACGTGT 1743
||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 1643 GTGTTACCTCACAACACTCCC-AAAATTAAATACAAGGAGGGAGCAACTACAGAACGTGT 1701
Query 1744 ATGAACCAATGGCAGGTGCGTTCCATACAATGT---ACCATTAGATTATGATTCATTTAT 1800
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1702 ATGAACCAATGGCAGGTGCGTTCCATACAATGTGCCACCATTAGATTATGATTCATTTAT 1761
Query 1801 CGCCTAGAGTGATGTTGTAGAGGAGCACCG---A---GAAACTAATGTAAGTTTAACAGA 1854
||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1762 TGCCTAGAGTGATGTTGTAGAGGAGCACCGGTTACAAGAAACTAATGTAAGTTTAACAGA 1821
Query 1855 GAATGTACTTCATCGGCTGCATTGGTACACTATTTGATTATAATATTTTTGACCACTCAA 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1822 GAATGTACTTCATCGGCTGCATTGGTACACTATTTGATTATAATATTTTTGACCATTCAA 1881
Query 1915 ATGCATCTTTATAATCAGCT 1934
||||||||| ||||||||||
Sbjct 1882 ATGCATCTTCATAATCAGCT 1901
Score = 671 bits (363), Expect = 0.0
Identities = 480/532 (90%), Gaps = 26/532 (5%)
Strand=Plus/Plus
Query 526 TCACGAAAGAGAAAGGCGACAATGGATATGGTTGTTGCTCCATCTAATAATGGATTCACG 585
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TCACGGAAGAGAAAGTCGACAATGGATATGGTTGTTGCTCCATCTAATAATGGATTCACG 485
Query 586 AGTTCTGGTTTCACTAACATACCTAGCAGTCCCTGTCAAACTCCTAG-AAAAGGGGGCAG 644
|||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||
Sbjct 486 AGTTCTGGTTTCACTAGCATACCTAGCAGTCCCTGTCAAACTCCT-GCAAAAGGGGGCAG 544
Query 645 AGTCAACATCAAGTCAAAGGCCAAAGGAAACAAGTCAACTCCTCAAACACCCATCTCGAC 704
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 545 AGTCAACATCAAGTCAAAGGCCAAAGGAAATAAGTCAACTCCCCAAACACCCATCTCGAC 604
Query 705 AAACGCT-GTTAGATCCTTTTATGAAATA-TCTTTC----A--TGTC--TA-G--AG-T- 749
|||||| ||| |||| | | | || || || | || | || | || |
Sbjct 605 GAACGCTGGTT--CTCCTGTGA-CACTTACTCCATCGGGAAGTTGCCGTTATGACAGTTC 661
Query 750 AACAAGTCTCCTTACAAAAAAGTTCGTCAATCTAATTAAACAAGCCAAAGATGGAATGCT 809
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TTTAGGTCTCCTTACAAAAAAGTTCGTCAATCTAATTAAACAAGCCAAAGATGGAATGCT 721
Query 810 GGACCTAAACAAAGCTGCAGAAACATTGGAGGTGCAGAAACGACGTATATATGATATTAC 869
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GGATCTAAACAAAGCTGCAGAAACATTGGAGGTGCAGAAACGACGTATATATGATATTAC 781
Query 870 AAACGTTTTGGAGGGGATAGATCTCATTGAAAAGCCTTTCAAGAATCGAATACTTTGGAA 929
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 782 AAACGTTTTGGAGGGGATAGATCTCATCGAAAAGCCTTTCAAGAATCGAATACTTTGGAA 841
Query 930 GGGAGTTGATGCGTGTCCTGGCGATGAGGATGCTGACGTATCTGTATTACAGCTGCAGGC 989
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 842 GGGAGTTGATGCGAGTCCTGGCGATGAGGATGCTGACGTATCTGTATTACAG--GCAG-- 897
Query 990 AGAAATTGAAAACCTCGCCCTCGAAGAGCAAGCATTAGACAACCAAATCAGA 1041
| || |||||||||| ||||||||||||||||| ||||| || |||||||||
Sbjct 898 A-AA-TTGAAAACCTTGCCCTCGAAGAGCAAGCGTTAGATAATCAAATCAGA 947
Score = 599 bits (324), Expect = 3e-170
Identities = 358/375 (95%), Gaps = 0/375 (0%)
Strand=Plus/Plus
Query 1 TCTTCCTCTTTCTCTCACTAAAACCCTTGTTTCCTTCACTCGCCGTCGCTTTTCCCGTCA 60
||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | |||
Sbjct 51 TCTTCCTCTTTCTCTCACTAAAACCCTCGTTTCCTTCAATCGCCGTCGCTTTTCTCTTCA 110
Query 61 TCGGAATCTTCAAATTCGACTCTCGCTTCACTACGATCCATGTCCGGTGTCGTACGATCT 120
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 111 TCGGAATCTTCAAATTCGAGTCTCGCTTCACTACGATCCATGTCCGGTCTCGTACGATCT 170
Query 121 TCTCCCGGTTCTTCTCAGCCGCCACCGCCGCCGCCGCACCATCCACCGTCATCTCCGGTT 180
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 171 TCTCCCGGTTCTTCTCATCCGCCACCGCCGCCGCCGCACCATCCGCCGTCATCTCCGGTT 230
Query 181 CCGGTTACATCTACGCCGGTTATACCACCTATACGTCGTCACTTAGCTTTCGCCTCAACA 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 231 CCGGTTACATCTACGCCGGTTGTACCACCTATACGTCGTCACTTAGCTTTCGCCTCAACA 290
Query 241 AAACCTCCGTTTCATCCTTCCGATGATTACCATCGATTTAACCCTTCTTCGCTCAGTAAT 300
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| ||||
Sbjct 291 AAACCGCCGTTTCATCCTTCGGATGATTACCATCGTTTTAACCCTTCTTCGCTCACTAAT 350
Query 301 AATAACGACAGGAGCTTCGTTCATGGTTGTGGTGTTGTAGATCGGGAGGAAGATGCTGTC 360
|||||||| |||||||||||| ||| |||||||||||||||||||||||| |||||||||
Sbjct 351 AATAACGATAGGAGCTTCGTTAATGCTTGTGGTGTTGTAGATCGGGAGGAGGATGCTGTC 410
Query 361 GTTGTTAGATCTCCT 375
|||||||||||||||
Sbjct 411 GTTGTTAGATCTCCT 425
> Ahg952629 jgi|Araly1|952629|scaffold_97000002.1
Length=337
Score = 481 bits (260), Expect = 1e-134
Identities = 284/296 (96%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 80 CTCTCGCTTCACTACGATCCATGTCCGGTGTCGTACGATCTTCTCCCGGTTCTTCTCAGC 139
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1 CTCTCCCTTCACTACGATCCATGTCCGGTCTCGTACGATCTTCTCCCGGTTCTTCTCATC 60
Query 140 CGCCACCGCCGCCGCCGCACCATCCACCGTCATCTCCGGTTCCGGTTACATCTACGCCGG 199
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 CGCCACCGCCGCCGCCGCACCATCCGCCGTCATCTCCGGTTCCGGTTACATCTACGCCGG 120
Query 200 TTATACCACCTATACGTCGTCACTTAGCTTTCGCCTCAACAAAACCTCCGTTTCATCCTT 259
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 TTGTACCACCTATACGTCGTCACTTAGCTTTCGCCTCAACAAAACCGCCGTTTCATCCTT 180
Query 260 CCGATGATTACCATCGATTTAACCCTTCTTCGCTCAGTAATAATAACGACAGGAGCTTCG 319
| |||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 181 CGGATGATTACCATCGTTTTAACCCTTCTTCGCTCACTAATAATAACGATAGGAGCTTCG 240
Query 320 TTCATGGTTGTGGTGTTGTAGATCGGGAGGAAGATGCTGTCGTTGTTAGATCTCCT 375
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTAATGCTTGTGGTGTTGTAGATCGGGAGGAAGATGCTGTCGTTGTTAGATCTCCT 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72714277705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5