BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36020.1 Length=1317 Score E Sequences producing significant alignments: (Bits) Value Ahg482576 jgi|Araly1|482576|fgenesh2_kg.4__1636__AT2G36020.1 1989 0.0 > Ahg482576 jgi|Araly1|482576|fgenesh2_kg.4__1636__AT2G36020.1 Length=1330 Score = 1989 bits (1077), Expect = 0.0 Identities = 1251/1333 (94%), Gaps = 20/1333 (2%) Strand=Plus/Plus Query 2 TATTCCAATTTTAGAACTTACGCGTCTTCATAATCTTCCTCtttttttctttgtctttga 61 |||||||||||||||||| | |||||||||||||||||||||||||||| || ||||||| Sbjct 1 TATTCCAATTTTAGAACTCAAGCGTCTTCATAATCTTCCTCTTTTTTTCCTTATCTTTGA 60 Query 62 tattcaaagtttttg--tttatt-ttttctttgCTTAACCCGGAGAGACACCCTCTCCAT 118 ||||||||||||||| ||| || |||| ||||||||| |||| |||||||||||||||| Sbjct 61 TATTCAAAGTTTTTGTATTTGTTATTTT-TTTGCTTAAACCGGGGAGACACCCTCTCCAT 119 Query 119 AAATTTAGTTTTGATCCCTCTGGGTTCCTTGAAGaaaa-aaaCA-CCAATTCCATTCATA 176 ||||||||||||||||| |||||||||||||||||||| ||| | || |||||||||||| Sbjct 120 AAATTTAGTTTTGATCCGTCTGGGTTCCTTGAAGAAAATAAA-ATCCTATTCCATTCATA 178 Query 177 TTCTTCTTCATACGTTCAATAATTCTTACGAGGACGAGATCTTCCTAACGTCTTTGATCT 236 ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| Sbjct 179 TTCTTCTTCATACGTTCAAGAATCCTTACGAGGACGAGATCTTCCCAACGTCTTTGATCT 238 Query 237 TCTTCATTAGGAGATAAGTCTAAACTGGTCGAAGATGTTGGGAGATTTCATCATCAGACT 296 |||||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||| Sbjct 239 TCTTCAATAGGAGATAATTCTGATTTGGTCGAAGATGTTGGGAGATTTCATCATCAGACT 298 Query 297 CCTTGTATTGATATTAGGGTACACATACCCAGCATTCGAATGCTTTAAAACGGTGGAGAA 356 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 299 CCTTGTATTAATATTAGGGTACACATACCCAGCATTTGAATGCTTTAAAACGGTGGAGAA 358 Query 357 GAACAAAGTTGATATCGAGGAACTCAGATTTTGGTGCCAATACTGGATACTTTTGGCGCT 416 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 359 GAACAAAGTTGATATCGAGGAACTCAGATTTTGGTGCCAGTACTGGATACTTTTGGCGCT 418 Query 417 AATTTCATCATTCGAGAGGGTTGGCGAtttttttATCTCATGGTTACCGTTATACGGAGA 476 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 419 AATTTCATCATTTGAGAGGGTTGGCGATTTTTTTATCTCATGGTTGCCGTTATACGGAGA 478 Query 477 GATGAAAGTAGTCTTCTTCGTATATCTCTGGTACCCTAAAACAAAGGGAACGAGACATGT 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 GATGAAAGTAGTCTTCTTCGTATATCTCTGGTACCCTAAAACAAAGGGAACGAGACATGT 538 Query 537 GTATGAAACATTGTTGAAGCCATACATGGCTCAACACGAGACAGAGATTGACAGAAAGAT 596 ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 539 TTATGAGACATTGTTGAAGCCATACATGGCTCAACATGAGACAGAGATTGACAGAAAGAT 598 Query 597 CATGGAGTTGCGAGCTCGAGCTTGGGACTTTTTCATCTTTTACTTCAACAACTTCGCCCA 656 |||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||| Sbjct 599 TATGGAGTTGCGAGCTCGAGCTTGGGACTTTTTCATCTTCTACTTCCACAACTTTGCCCA 658 Query 657 GGCCGGTCAATCCACCTTGATCCAGGGTTTTCAGTACGTACTCGCCCAATCGGTCCGGTT 716 ||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 659 GGCTGGTCAATCGACCTTGATCCAGGGTTTTCAGTACGTACTCGCCCAATCAGTCCGGTT 718 Query 717 CTCTGCCGCTGCAGCTAACCAACCGCCAACGGAGAGGAACGTGAACATGAACGCGCAGTC 776 ||||||||||||||||||||||||||| | |||| ||||||||||||||||||| ||||| Sbjct 719 CTCTGCCGCTGCAGCTAACCAACCGCCGATGGAGCGGAACGTGAACATGAACGCCCAGTC 778 Query 777 ACCGGTGGAGATGGACAATGATCCTCCATCACCGCGCGCTCCAAGACCGCTGAACAAATC 836 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 779 ACCGGTGGAGATGGACAATGATCCGCCATCACCGCGGGCTCCAAGACCGCTGAACAAATC 838 Query 837 ACTATCTGCGTTGCGATCGCTAGAGAAGCAAACAAGCAGAGGGAGGAAGTGGCCGCCACC 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 ACTATCTGCGTTGCGATCGCTAGAGAAGCAAACAAGCAGAGGGAGGAAGTGGCCGCCACC 898 Query 897 AACACCACCACCAACACCAGGCCGAGACTCCGCCGGAACATTTAACGGTGATGATGGAGT 956 |||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||| Sbjct 899 AACACCACCACCAACACCAGGCCGAGACTCAGCCGGGACATTCAACGGTGAAGATGGAGT 958 Query 957 CAACATTCCTGATACAATTCCGGGATCACCCCTCACTGATGCTCGAGCTAAGCTGCGACG 1016 ||||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||| Sbjct 959 CAACATTCCCGATACAATTCCGGGATCACCCCTGACCGATGCTCGAGCTAAGCTCCGACG 1018 Query 1017 TTCTAACTCCAGAACTCAGCCAGCGGCATAGTAACGCAAACGTACATATACGTGACTCGA 1076 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1019 TTCTAACTCCAGAACTCAGCCCGCGGCATAGTAACGTAAACGTACATATACGTGACTCGA 1078 Query 1077 CAAAGAAACCCTTTTCG-TTTGTTTAAAGATATATAGGGAAAGAAAAGTGAATGAAAGTT 1135 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 CAAAGGAACCCTTTTCGATTTGTTTAAAGATATATAGGGAAAGAAAAGTGAATGAAAGTT 1138 Query 1136 TTGAATTGAAACAAAACAGAtttttttttttttttCATGTTTTCTGTAAATTGAAGCAGT 1195 |||||||||| ||||||||||| ||||||||| | |||||| |||||||||||||||| Sbjct 1139 TTGAATTGAAGCAAAACAGATTGATTTTTTTTTCTG-TGTTTTTTGTAAATTGAAGCAGT 1197 Query 1196 AAGTATTAATACAGCGAGAATATTTGTGTTTGTTTTCGTTTAAACTTCCCGCT----T-T 1250 |||||||||||||||||||||||||||||||||||| |||| ||||||| ||| | | Sbjct 1198 AAGTATTAATACAGCGAGAATATTTGTGTTTGTTTTGGTTTGAACTTCCGGCTAGGGTGT 1257 Query 1251 --AATC---C-GGATATTGATTTGAGTTTGGATTTCTTCATATAGCTGATTATAAAGATG 1304 |||| | |||||||||||||||||||| ||| ||||||||||||||||| |||||| Sbjct 1258 TCAATCAATCTGGATATTGATTTGAGTTTGGGTTTTTTCATATAGCTGATTATGAAGATG 1317 Query 1305 CATTTGAGTGGTC 1317 ||||||| ||||| Sbjct 1318 CATTTGAATGGTC 1330 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49254808764 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5