BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36020.1
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482576 jgi|Araly1|482576|fgenesh2_kg.4__1636__AT2G36020.1 1989 0.0
> Ahg482576 jgi|Araly1|482576|fgenesh2_kg.4__1636__AT2G36020.1
Length=1330
Score = 1989 bits (1077), Expect = 0.0
Identities = 1251/1333 (94%), Gaps = 20/1333 (2%)
Strand=Plus/Plus
Query 2 TATTCCAATTTTAGAACTTACGCGTCTTCATAATCTTCCTCtttttttctttgtctttga 61
|||||||||||||||||| | |||||||||||||||||||||||||||| || |||||||
Sbjct 1 TATTCCAATTTTAGAACTCAAGCGTCTTCATAATCTTCCTCTTTTTTTCCTTATCTTTGA 60
Query 62 tattcaaagtttttg--tttatt-ttttctttgCTTAACCCGGAGAGACACCCTCTCCAT 118
||||||||||||||| ||| || |||| ||||||||| |||| ||||||||||||||||
Sbjct 61 TATTCAAAGTTTTTGTATTTGTTATTTT-TTTGCTTAAACCGGGGAGACACCCTCTCCAT 119
Query 119 AAATTTAGTTTTGATCCCTCTGGGTTCCTTGAAGaaaa-aaaCA-CCAATTCCATTCATA 176
||||||||||||||||| |||||||||||||||||||| ||| | || ||||||||||||
Sbjct 120 AAATTTAGTTTTGATCCGTCTGGGTTCCTTGAAGAAAATAAA-ATCCTATTCCATTCATA 178
Query 177 TTCTTCTTCATACGTTCAATAATTCTTACGAGGACGAGATCTTCCTAACGTCTTTGATCT 236
||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 179 TTCTTCTTCATACGTTCAAGAATCCTTACGAGGACGAGATCTTCCCAACGTCTTTGATCT 238
Query 237 TCTTCATTAGGAGATAAGTCTAAACTGGTCGAAGATGTTGGGAGATTTCATCATCAGACT 296
|||||| |||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 239 TCTTCAATAGGAGATAATTCTGATTTGGTCGAAGATGTTGGGAGATTTCATCATCAGACT 298
Query 297 CCTTGTATTGATATTAGGGTACACATACCCAGCATTCGAATGCTTTAAAACGGTGGAGAA 356
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 299 CCTTGTATTAATATTAGGGTACACATACCCAGCATTTGAATGCTTTAAAACGGTGGAGAA 358
Query 357 GAACAAAGTTGATATCGAGGAACTCAGATTTTGGTGCCAATACTGGATACTTTTGGCGCT 416
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 359 GAACAAAGTTGATATCGAGGAACTCAGATTTTGGTGCCAGTACTGGATACTTTTGGCGCT 418
Query 417 AATTTCATCATTCGAGAGGGTTGGCGAtttttttATCTCATGGTTACCGTTATACGGAGA 476
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 419 AATTTCATCATTTGAGAGGGTTGGCGATTTTTTTATCTCATGGTTGCCGTTATACGGAGA 478
Query 477 GATGAAAGTAGTCTTCTTCGTATATCTCTGGTACCCTAAAACAAAGGGAACGAGACATGT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GATGAAAGTAGTCTTCTTCGTATATCTCTGGTACCCTAAAACAAAGGGAACGAGACATGT 538
Query 537 GTATGAAACATTGTTGAAGCCATACATGGCTCAACACGAGACAGAGATTGACAGAAAGAT 596
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 539 TTATGAGACATTGTTGAAGCCATACATGGCTCAACATGAGACAGAGATTGACAGAAAGAT 598
Query 597 CATGGAGTTGCGAGCTCGAGCTTGGGACTTTTTCATCTTTTACTTCAACAACTTCGCCCA 656
|||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||
Sbjct 599 TATGGAGTTGCGAGCTCGAGCTTGGGACTTTTTCATCTTCTACTTCCACAACTTTGCCCA 658
Query 657 GGCCGGTCAATCCACCTTGATCCAGGGTTTTCAGTACGTACTCGCCCAATCGGTCCGGTT 716
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 GGCTGGTCAATCGACCTTGATCCAGGGTTTTCAGTACGTACTCGCCCAATCAGTCCGGTT 718
Query 717 CTCTGCCGCTGCAGCTAACCAACCGCCAACGGAGAGGAACGTGAACATGAACGCGCAGTC 776
||||||||||||||||||||||||||| | |||| ||||||||||||||||||| |||||
Sbjct 719 CTCTGCCGCTGCAGCTAACCAACCGCCGATGGAGCGGAACGTGAACATGAACGCCCAGTC 778
Query 777 ACCGGTGGAGATGGACAATGATCCTCCATCACCGCGCGCTCCAAGACCGCTGAACAAATC 836
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 779 ACCGGTGGAGATGGACAATGATCCGCCATCACCGCGGGCTCCAAGACCGCTGAACAAATC 838
Query 837 ACTATCTGCGTTGCGATCGCTAGAGAAGCAAACAAGCAGAGGGAGGAAGTGGCCGCCACC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACTATCTGCGTTGCGATCGCTAGAGAAGCAAACAAGCAGAGGGAGGAAGTGGCCGCCACC 898
Query 897 AACACCACCACCAACACCAGGCCGAGACTCCGCCGGAACATTTAACGGTGATGATGGAGT 956
|||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct 899 AACACCACCACCAACACCAGGCCGAGACTCAGCCGGGACATTCAACGGTGAAGATGGAGT 958
Query 957 CAACATTCCTGATACAATTCCGGGATCACCCCTCACTGATGCTCGAGCTAAGCTGCGACG 1016
||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 959 CAACATTCCCGATACAATTCCGGGATCACCCCTGACCGATGCTCGAGCTAAGCTCCGACG 1018
Query 1017 TTCTAACTCCAGAACTCAGCCAGCGGCATAGTAACGCAAACGTACATATACGTGACTCGA 1076
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1019 TTCTAACTCCAGAACTCAGCCCGCGGCATAGTAACGTAAACGTACATATACGTGACTCGA 1078
Query 1077 CAAAGAAACCCTTTTCG-TTTGTTTAAAGATATATAGGGAAAGAAAAGTGAATGAAAGTT 1135
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CAAAGGAACCCTTTTCGATTTGTTTAAAGATATATAGGGAAAGAAAAGTGAATGAAAGTT 1138
Query 1136 TTGAATTGAAACAAAACAGAtttttttttttttttCATGTTTTCTGTAAATTGAAGCAGT 1195
|||||||||| ||||||||||| ||||||||| | |||||| ||||||||||||||||
Sbjct 1139 TTGAATTGAAGCAAAACAGATTGATTTTTTTTTCTG-TGTTTTTTGTAAATTGAAGCAGT 1197
Query 1196 AAGTATTAATACAGCGAGAATATTTGTGTTTGTTTTCGTTTAAACTTCCCGCT----T-T 1250
|||||||||||||||||||||||||||||||||||| |||| ||||||| ||| | |
Sbjct 1198 AAGTATTAATACAGCGAGAATATTTGTGTTTGTTTTGGTTTGAACTTCCGGCTAGGGTGT 1257
Query 1251 --AATC---C-GGATATTGATTTGAGTTTGGATTTCTTCATATAGCTGATTATAAAGATG 1304
|||| | |||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct 1258 TCAATCAATCTGGATATTGATTTGAGTTTGGGTTTTTTCATATAGCTGATTATGAAGATG 1317
Query 1305 CATTTGAGTGGTC 1317
||||||| |||||
Sbjct 1318 CATTTGAATGGTC 1330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49254808764
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5