BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36026.1 Length=552 Score E Sequences producing significant alignments: (Bits) Value Ahg951699 jgi|Araly1|951699|scaffold_11000001.1 872 0.0 Ahg901452 jgi|Araly1|901452|Al_scaffold_0004_2102 859 0.0 > Ahg951699 jgi|Araly1|951699|scaffold_11000001.1 Length=599 Score = 872 bits (472), Expect = 0.0 Identities = 528/555 (95%), Gaps = 3/555 (1%) Strand=Plus/Plus Query 1 ATGACGACAGGCAAAAGCAAGAAGAAGAAGATGGTCCTTAAGGCAGTCTCTGTCGTAGAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21 ATGACGACAGGCAAAAGCAAGAAGAAGAAGATGGTCCTTAAGGCAGTCTCTGTCGTAGAC 80 Query 61 ATCGGCTGTGGCAACTGTAAGTTCCCAAGCTTGTCTTCTTTTTTCAACCCTTCCCCCAAA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 81 ATCGGCTGTGGCAACTGTAAGTTCCCAAGCTTGTCTTCTTTTTTCAACCCTACCCCAAAA 140 Query 121 AAGCCCCGCCTCTACTCCTCTAATTACGGccactgccactcctccacccccaccacggcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 AAGCCCCGCCTCTACTCCTCTAATTACGGCCACTGCCACTCCTCCACCCCCACCACGGCC 200 Query 181 tcctcttcctccgccgttccctccacctcccacTGGTTCTCTGACACCTCTTCCTCCTCG 240 ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 201 TCCTCCTCCTCCGCCGTTCCCTCCACCTCCCACTGGTTCTCTGACAATTCTTCCTCCTCC 260 Query 241 GCAACACCCTCCGCCGCCGCTGTCGCCGTCGAGAAAGACTCAGACGATCCTTACCTAGAT 300 |||||||| ||| ||||||||||||||||||||||||| || ||||| |||||||| ||| Sbjct 261 GCAACACCTTCCACCGCCGCTGTCGCCGTCGAGAAAGATTCCGACGACCCTTACCTTGAT 320 Query 301 TTCCGACAGTCCATGCTTCAGATGATTCTCGAGAACGAGATTTACTCCAAAAACGATCTC 360 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 321 TTCCGACAGTCTATGCTTCAGATGATTCTCGAGAACGAGATTTACTCCAAAAACGATCTT 380 Query 361 AGAGAGCTTCTCCACTGCTTCCTCTCCCTTAACGAGCCATACCACCACGGCATCATCATC 420 ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| Sbjct 381 AGAGAGCTTCTCCACTGTTTCCTATCCCTTAACGAGCCCTACCACCACGGCATCATCATC 440 Query 421 CGCGCTTTCTCCGAAATCTGGGACGGAGTTTTCTCCGCTGCC---AAACGCCGTGGAGAC 477 |||||||||||||||||||||||||||||||||||||| ||| |||| |||||| ||| Sbjct 441 CGCGCTTTCTCCGAAATCTGGGACGGAGTTTTCTCCGCCGCCGTCAAACACCGTGGCGAC 500 Query 478 GTCCAAGAGTCTCCACTCGTCCACCGTCATGGCTCACGTGCGTCACACCGTAACCACTAC 537 ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 501 GTCCAAGAGTCACCACTCGTCCACCGTCATGGCTCACGTGCCTCGCACCGTAACCACTAC 560 Query 538 CACCGCTCGAAGTAA 552 ||||| ||||||||| Sbjct 561 CACCGATCGAAGTAA 575 > Ahg901452 jgi|Araly1|901452|Al_scaffold_0004_2102 Length=579 Score = 859 bits (465), Expect = 0.0 Identities = 523/551 (95%), Gaps = 4/551 (1%) Strand=Plus/Plus Query 1 ATGACGACAGGCAAAAGCAAGAAGAAGAAGATGGTCCTTAAGGCAGTCTCTGTCGTAGAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGACGACAGGCAAAAGCAAGAAGAAGAAGATGGTCCTTAAGGCAGTCTCTGTCGTAGAC 60 Query 61 ATCGGCTGTGGCAACTGTAAGTTCCCAAGCTTGTCTTCTTTTTTCAACCCTTCCCCCAAA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 61 ATCGGCTGTGGCAACTGTAAGTTCCCAAGCTTGTCTTCTTTTTTCAACCCTACCCCAAAA 120 Query 121 AAGCCCCGCCTCTACTCCTCTAATTACGGccactgccactcctccacccccaccacggcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AAGCCCCGCCTCTACTCCTCTAATTACGGCCACTGCCACTCCTCCACCCCCACCACGGCC 180 Query 181 tcctcttcctccgccgttccctccacctcccacTGGTTCTCTGACACCTCTTCCTCCTCG 240 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 181 TCCTCCTCCTCCGCCGTTCCCTCCACCTCCCACTGGTTCTCCGACACCTCTTCCTCTTCC 240 Query 241 GCAACACCCTCCGCCGCCGCTGTCGCCGTCGAGAAAGACTCAGACGATCCTTACCTAGAT 300 |||||||| ||| ||||||||||||||||||||||||| || ||||| |||||||| ||| Sbjct 241 GCAACACCTTCCACCGCCGCTGTCGCCGTCGAGAAAGATTCCGACGACCCTTACCTTGAT 300 Query 301 TTCCGACAGTCCATGCTTCAGATGATTCTCGAGAACGAGATTTACTCCAAAAACGATCTC 360 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTCCGACAGTCTATGCTTCAGATGATTCTCGAGAACGAGATTTACTCCAAAAACGATCTT 360 Query 361 AGAGAGCTTCTCCACTGCTTCCTCTCCCTTAACGAGCCATACCACCACGGCATCATCATC 420 ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| Sbjct 361 AGAGAGCTTCTCCACTGTTTCCTATCCCTTAACGAGCCCTACCACCACGGCATCATCATC 420 Query 421 CGCGCTTTCTCCGAAATCTGGGACGGAGTTTTCTCCGCTGCC---AAACGCCGTGGAGAC 477 |||||||||||||||||||||||||||||||||||||| ||| |||| |||||| ||| Sbjct 421 CGCGCTTTCTCCGAAATCTGGGACGGAGTTTTCTCCGCCGCCGTCAAACACCGTGGCGAC 480 Query 478 GTCCAAGAGTCTCCACTCGTCCACCGTCATGGCTCACGTGCGTCACACCGTAACCACTAC 537 ||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||| Sbjct 481 GTCCAAGAGTCCCCACTCGTCCACCG-CATGGCTCACGTGCCTCGCACCGTAACCACTAC 539 Query 538 CACCGCTCGAA 548 ||||| ||||| Sbjct 540 CACCGATCGAA 550 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20146150992 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5