BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36026.1
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951699 jgi|Araly1|951699|scaffold_11000001.1 872 0.0
Ahg901452 jgi|Araly1|901452|Al_scaffold_0004_2102 859 0.0
> Ahg951699 jgi|Araly1|951699|scaffold_11000001.1
Length=599
Score = 872 bits (472), Expect = 0.0
Identities = 528/555 (95%), Gaps = 3/555 (1%)
Strand=Plus/Plus
Query 1 ATGACGACAGGCAAAAGCAAGAAGAAGAAGATGGTCCTTAAGGCAGTCTCTGTCGTAGAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGACGACAGGCAAAAGCAAGAAGAAGAAGATGGTCCTTAAGGCAGTCTCTGTCGTAGAC 80
Query 61 ATCGGCTGTGGCAACTGTAAGTTCCCAAGCTTGTCTTCTTTTTTCAACCCTTCCCCCAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 81 ATCGGCTGTGGCAACTGTAAGTTCCCAAGCTTGTCTTCTTTTTTCAACCCTACCCCAAAA 140
Query 121 AAGCCCCGCCTCTACTCCTCTAATTACGGccactgccactcctccacccccaccacggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 AAGCCCCGCCTCTACTCCTCTAATTACGGCCACTGCCACTCCTCCACCCCCACCACGGCC 200
Query 181 tcctcttcctccgccgttccctccacctcccacTGGTTCTCTGACACCTCTTCCTCCTCG 240
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 201 TCCTCCTCCTCCGCCGTTCCCTCCACCTCCCACTGGTTCTCTGACAATTCTTCCTCCTCC 260
Query 241 GCAACACCCTCCGCCGCCGCTGTCGCCGTCGAGAAAGACTCAGACGATCCTTACCTAGAT 300
|||||||| ||| ||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct 261 GCAACACCTTCCACCGCCGCTGTCGCCGTCGAGAAAGATTCCGACGACCCTTACCTTGAT 320
Query 301 TTCCGACAGTCCATGCTTCAGATGATTCTCGAGAACGAGATTTACTCCAAAAACGATCTC 360
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TTCCGACAGTCTATGCTTCAGATGATTCTCGAGAACGAGATTTACTCCAAAAACGATCTT 380
Query 361 AGAGAGCTTCTCCACTGCTTCCTCTCCCTTAACGAGCCATACCACCACGGCATCATCATC 420
||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 381 AGAGAGCTTCTCCACTGTTTCCTATCCCTTAACGAGCCCTACCACCACGGCATCATCATC 440
Query 421 CGCGCTTTCTCCGAAATCTGGGACGGAGTTTTCTCCGCTGCC---AAACGCCGTGGAGAC 477
|||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |||
Sbjct 441 CGCGCTTTCTCCGAAATCTGGGACGGAGTTTTCTCCGCCGCCGTCAAACACCGTGGCGAC 500
Query 478 GTCCAAGAGTCTCCACTCGTCCACCGTCATGGCTCACGTGCGTCACACCGTAACCACTAC 537
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 501 GTCCAAGAGTCACCACTCGTCCACCGTCATGGCTCACGTGCCTCGCACCGTAACCACTAC 560
Query 538 CACCGCTCGAAGTAA 552
||||| |||||||||
Sbjct 561 CACCGATCGAAGTAA 575
> Ahg901452 jgi|Araly1|901452|Al_scaffold_0004_2102
Length=579
Score = 859 bits (465), Expect = 0.0
Identities = 523/551 (95%), Gaps = 4/551 (1%)
Strand=Plus/Plus
Query 1 ATGACGACAGGCAAAAGCAAGAAGAAGAAGATGGTCCTTAAGGCAGTCTCTGTCGTAGAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACGACAGGCAAAAGCAAGAAGAAGAAGATGGTCCTTAAGGCAGTCTCTGTCGTAGAC 60
Query 61 ATCGGCTGTGGCAACTGTAAGTTCCCAAGCTTGTCTTCTTTTTTCAACCCTTCCCCCAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 61 ATCGGCTGTGGCAACTGTAAGTTCCCAAGCTTGTCTTCTTTTTTCAACCCTACCCCAAAA 120
Query 121 AAGCCCCGCCTCTACTCCTCTAATTACGGccactgccactcctccacccccaccacggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCCCCGCCTCTACTCCTCTAATTACGGCCACTGCCACTCCTCCACCCCCACCACGGCC 180
Query 181 tcctcttcctccgccgttccctccacctcccacTGGTTCTCTGACACCTCTTCCTCCTCG 240
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 181 TCCTCCTCCTCCGCCGTTCCCTCCACCTCCCACTGGTTCTCCGACACCTCTTCCTCTTCC 240
Query 241 GCAACACCCTCCGCCGCCGCTGTCGCCGTCGAGAAAGACTCAGACGATCCTTACCTAGAT 300
|||||||| ||| ||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct 241 GCAACACCTTCCACCGCCGCTGTCGCCGTCGAGAAAGATTCCGACGACCCTTACCTTGAT 300
Query 301 TTCCGACAGTCCATGCTTCAGATGATTCTCGAGAACGAGATTTACTCCAAAAACGATCTC 360
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCCGACAGTCTATGCTTCAGATGATTCTCGAGAACGAGATTTACTCCAAAAACGATCTT 360
Query 361 AGAGAGCTTCTCCACTGCTTCCTCTCCCTTAACGAGCCATACCACCACGGCATCATCATC 420
||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 361 AGAGAGCTTCTCCACTGTTTCCTATCCCTTAACGAGCCCTACCACCACGGCATCATCATC 420
Query 421 CGCGCTTTCTCCGAAATCTGGGACGGAGTTTTCTCCGCTGCC---AAACGCCGTGGAGAC 477
|||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |||
Sbjct 421 CGCGCTTTCTCCGAAATCTGGGACGGAGTTTTCTCCGCCGCCGTCAAACACCGTGGCGAC 480
Query 478 GTCCAAGAGTCTCCACTCGTCCACCGTCATGGCTCACGTGCGTCACACCGTAACCACTAC 537
||||||||||| |||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 481 GTCCAAGAGTCCCCACTCGTCCACCG-CATGGCTCACGTGCCTCGCACCGTAACCACTAC 539
Query 538 CACCGCTCGAA 548
||||| |||||
Sbjct 540 CACCGATCGAA 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20146150992
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5