BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36050.1
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482579 jgi|Araly1|482579|fgenesh2_kg.4__1639__AT2G36050.1 1554 0.0
> Ahg482579 jgi|Araly1|482579|fgenesh2_kg.4__1639__AT2G36050.1
Length=1063
Score = 1554 bits (841), Expect = 0.0
Identities = 1005/1080 (93%), Gaps = 28/1080 (3%)
Strand=Plus/Plus
Query 109 aaaTATGAAACTCCCATTTCTAAACAAGAACCACTCAACATCTTCATATTCTTCAAATTC 168
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACATGAAACTCCCATTTCTATACAAGAACCACTCAACATCTTCATATTCTTCAAATTC 60
Query 169 ATCATCCTCTTCATGGCCATGGCCTTCTTGTAACCAAAACCCTAAAACCTTATCTTTCAG 228
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 61 ATCATCCTCTTCATGGCCATGGCCTTCTTGTAATCAAAACCCTAAGACCTTATCTTTCAG 120
Query 229 AGCCACCATCACTTTCACCAACCCTATCCACGACCAAGACGACGATGAGCTCGACCTGCT 288
||||||||||||||||||||||||||| ||||||||||| ||| || | || |||
Sbjct 121 AGCCACCATCACTTTCACCAACCCTATTCACGACCAAGATGAC---GA--T-GA---GCT 171
Query 289 CGACCCACCGGAGATTACAGATTCCGTAGAGAATGTGATAAAAGGGCTAAGATCATCAGA 348
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 172 CGACCCACCGGAGATTACTGAGTCGGTAGAGAATGTGATAAAAGGGCTAAGATCATCAGA 231
Query 349 GAGACTCATCTTCGAAAGCAAAGGAGAAACCAACTCTATACTTGAAGAAGCTACGAGCAA 408
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 232 GAGACTCATCTTCGAAAGCAAAGGAGAAACCAACTCTATACTTGAAGGAGCTACGAGCAA 291
Query 409 GCGAGAAGAAGA-G--GACGAAGAAGAAGGCTTCATGCTCTTCTCCTTGGAATCAGACGA 465
|||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 292 GCGAGAAGAAGACGAAGACGAAGAAGAAGGCTTCATGCTCTTCTCCTTGGAATCAAACGA 351
Query 466 CCCTTACTCTGATTTCAAGAGATCCATGGAGGAGATGGTTGAGGCACACGCGCTTCACCA 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CCCTTACTCTGATTTCAAGAGATCCATGGAGGAGATGGTTGAGGCACACGCGCTTCACCA 411
Query 526 CGACTGGAAAAGCCTCGAGAAGCTTCTCCTTCAGTTCTTGAAAGTCAACGCCAAGACCAG 585
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 412 CGACTGGAAAAGCCTCGAGAAGCTTCTTCTTCAGTTCTTGAAAGTCAACGCCAAGACCAG 471
Query 586 CCATCGATATATCTTCGCGGCCTTCGTCGATCTCCTCATGAACTTAGCACT-AGACACGA 644
||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 472 CCATCGATACATCTTCGCGGCCTTCGTCGATCTCCTCATGAACTTAGCACTTA-ACACGA 530
Query 645 AAAAAGCCATCATCAATAACGACATTTCCAAAGATGACGGCGTCTCGGCCTCACGCGCCG 704
||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 531 AAAAACCCATCACCAATAGCGACATTTCCAAAGATGACGGCGTCTCGGCCTCACGCGCCG 590
Query 705 CCGCTGCTGGAGAAGCAAGCACTTCTTGTTGTAATAGTATGACTCTTGGCGAATCTCCAT 764
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 591 CCGCTGCCGGAGAAGCAAGCACTTCTTGTTGTAATAGTATGACTCTTGGAGAATCTCCGT 650
Query 765 CGTCTCCCTTGTCGTTTTACACGTCGTGTTCTTCATCTTCTTCCTCCGATGAGACTTCCT 824
||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||
Sbjct 651 CGTCTCCCTTGTCATTCTACACGTCGTGTTCGTCTTCTTCTTCCTCCGATGAGACTTCCT 710
Query 825 CGATGTCCGTACGTTTCTTGCCGCTGTCTTCTTTGTTAGAGATGGATGAGAAGACTAAAG 884
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 711 CGACGTCCGTACGTTTCTTGCCGCTGTCTTCTTTGTTAGAGATGGATGAGAACACTAAAG 770
Query 885 AGattttagtttagaacggttttgcatttttt--cttaattaatttgttttttttAGCTT 942
| ||| | |||||||||||||||||||||||| ||||||||||||||| ||| |||||
Sbjct 771 ACATTATGGTTTAGAACGGTTTTGCATTTTTTTTCTTAATTAATTTGTTCTTT--AGCTT 828
Query 943 AATTAAAATTTGTGCAGAATTGTAACATTGGCTACCCCGACTACACATATGGAGATGATG 1002
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 829 AATTAAAATTTGTGCAGAATTATAACATTGGCTACCCCGA-TACACATATGGAGATGATG 887
Query 1003 AATCGTATGAATATTATATTGGTCTGTATTGTGCTCACTTTTTATATTTTT-CATTAGTG 1061
|| ||||| | |||||||||||| ||||||||||| || ||||| |||||| || || ||
Sbjct 888 AACCGTATTACTATTATATTGGTATGTATTGTGCTTACCTTTTA-ATTTTTTCAATAATG 946
Query 1062 TGGAA--T--TTTTCGTTTTAAGTAGGATGATAATAGTTGAATCACACTTAAtttttttG 1117
||||| | ||||||||| | |||||||||| ||||||| || |||||| ||||||||
Sbjct 947 TGGAAAATAGTTTTCGTTT-ATGTAGGATGATGATAGTTGGATTGCACTTA-TTTTTTTG 1004
Query 1118 TTTCTTTCGTAAAAACAAGTTTTAGGCCATTGGATCGGTTAATTAATCTCAGTTTTTGAC 1177
||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1005 TTTCTTTGGTAAAGACAAGGATTAGGCCATTGGATCGGTTA-TTAATCTCAGTTTTTGAC 1063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43955723301
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5