BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36060.2
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482581 jgi|Araly1|482581|fgenesh2_kg.4__1641__AT2G36060.2 1055 0.0
Ahg898177 jgi|Araly1|898177|Al_scaffold_0005_2143 549 1e-155
Ahg949141 jgi|Araly1|949141|scaffold_801028.1 211 7e-54
> Ahg482581 jgi|Araly1|482581|fgenesh2_kg.4__1641__AT2G36060.2
Length=883
Score = 1055 bits (571), Expect = 0.0
Identities = 763/845 (90%), Gaps = 56/845 (7%)
Strand=Plus/Plus
Query 3 CCCACTCCAATTCTCGTCGCACCAATAGAGTAATTCAACTGCCCCAAATTGCTCTCGACT 62
|||||||||||||||||||||||||| ||||||||||||||||| || | | | | |
Sbjct 1 CCCACTCCAATTCTCGTCGCACCAAT--AGTAATTCAACTGCCCC-AA-T--T-T-G-C- 50
Query 63 TTTTATTCTCGGATTAGCGTTTGTGCTTTCGCATCAGAGAATCTCTCA------G--TTC 114
||| | | ||| | |||| |||||||||||||||||||||| | |||
Sbjct 51 ----ATTAGC-G-TTA--G--TGTG-TTTCGCATCAGAGAATCTCTCAGTTCTTGTCTTC 99
Query 115 T-TCTCAATTTAGGTCATCAGATCTCACAATCAATCGACTCGAACTCAAATCTCACTTCA 173
| ||||||||||||||||||||||||||||||||||||||||||| | || | |
Sbjct 100 TCTCTCAATTTAGGTCATCAGATCTCACAATCAATCGACTCGAAC-C----CT-A----A 149
Query 174 TCAATCAAATCATGACTCTTGGCTCAGGATCGAGTGTTGTCGTTCCGAGGAATTTCCGGT 233
|| || | || || ||| || |||||| |||||||||||||||||||||||| |||
Sbjct 150 TC-AT-GACTCTTGGCTC-AGG---AGGATCAAGTGTTGTCGTTCCGAGGAATTTCAGGT 203
Query 234 TGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTGTGAGCTATGGAA 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 TGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTGTGAGCTATGGAA 263
Query 294 TGGATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCATCGGTCCTCACA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 TGGATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCATCGGTCCTCACA 323
Query 354 ACGTAACTGTACATGAGGGTCGGATTTATCAGTTGAAGCTCTTCTGTGACAAAGATTACC 413
|| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 324 AC--A-CTGTACATGAGGGTCGAATTTATCAGTTGAAGCTCTTCTGTGACAAAGATTACC 380
Query 414 CTGAGAAACCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATG 473
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 381 CTGAGAAACCCCCGACTGTTCGGTTCCATTCACGTATCAACATGACTTGTGTCAACCATG 440
Query 474 ATACCGGCGTGGTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACA 533
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 441 AAACCGGCGTGGTGGATTCGAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGGCAGTACA 500
Query 534 CAATGGAGGACATACTGACTCAATTGAAGAAGGAGATGGCTGCATCGCATAACCGGAAGC 593
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 501 CAATGGAGGACATACTGACTCAATTGAAGAAGGAGATGACTGCATCGCATAACCGGAAGC 560
Query 594 TTGTTCAACCTCCCGAAGGAACTTTCTTCTAATACTCTCAAAGCCT---ACCTTTGAGGG 650
||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 561 TTGTTCAACCTCCTGAAGGAACCTTCTTTTAATACTCTCAAAGCCTTTTACCTTTGAGGG 620
Query 651 GCTTCTCCATTGTTG--G-TCTTCAAGCTTTT-CTTTCGTACCTTAAAGTAAAAACAATG 706
||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||||||
Sbjct 621 GCTTCTCCATTGTTGTTGATCTTCAAGCTTTTTCTTTCGTACCTAAAAGTAAAAACAATG 680
Query 707 GTGTCTGTCGATGAATGATGATGTTCGATTGATCATCTGGAGTTTAAATCCTTGTGTGCA 766
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 681 GTGTCTGTGGATGAATGATGATGTTCGATTGATCATCTGGAGTTTAAATCCTTGTATGCA 740
Query 767 AATATATCTAGACAACGCTGTCTCACGACTTCATCTTCTCAGTTTAGATATAATATGGGA 826
||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| |
Sbjct 741 AATATATCTAGACAACGTTGTCTCATGACTTCATCTTCTCAATTTAGATATAATATGGAA 800
Query 827 AACAA 831
|||||
Sbjct 801 AACAA 805
Score = 89.8 bits (48), Expect = 3e-17
Identities = 58/63 (92%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 897 TTTACTTCGCTTTTATTCGACCTGAACTCTCCTATTGTGTTCACATTTGAACGCAATTCA 956
|||||| | |||||| ||||||||||||||||||||||||||||||| || |||||||||
Sbjct 821 TTTACTGCACTTTTAGTCGACCTGAACTCTCCTATTGTGTTCACATTCGAGCGCAATTCA 880
Query 957 TGC 959
|||
Sbjct 881 TGC 883
> Ahg898177 jgi|Araly1|898177|Al_scaffold_0005_2143
Length=444
Score = 549 bits (297), Expect = 1e-155
Identities = 396/444 (89%), Gaps = 5/444 (1%)
Strand=Plus/Plus
Query 185 ATGACTCTTGGCTC---AGGATCGAGTGTTGTCGTTCCGAGGAATTTCCGGTTGCTGGAG 241
|||||||||||||| |||||| |||||||| ||||||||||||||||||||| |||||
Sbjct 1 ATGACTCTTGGCTCTGGAGGATCTAGTGTTGTTGTTCCGAGGAATTTCCGGTTGTTGGAG 60
Query 242 GAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTGTGAGCTATGGAATGGATGAT 301
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGAT 120
Query 302 GGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCATCGGTCCTCACAACGTAACT 361
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACGTAACT 180
Query 362 GTACATGAGGGTCGGATTTATCAGTTGAAGCTCTTCTGTGACAAAGATTACCCTGAGAAA 421
|| ||||| ||| | |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 181 GTTCATGAAGGTAGAATTTATCAGTTGAAGCTCTTTTGTGACAAAGATTACCCAGAGAAA 240
Query 422 CCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGC 481
||||| ||||| || |||||||| ||| | |||||| ||||||||||||| || || ||
Sbjct 241 CCTCCAACTGTCCGATTCCATTCACGTGTTAACATGGCTTGTGTCAACCACGAAACAGGA 300
Query 482 GTGGTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACACAATGGAG 541
||||||||| | ||||| || ||||| |||||||||||||||||| ||||||||||||||
Sbjct 301 GTGGTGGATCCTAAGAAATTCGGGGTACTTGCAAACTGGCAAAGAGAGTACACAATGGAG 360
Query 542 GACATACTGACTCAATTGAAGAAGGAGATGGCTGCATCGCATAACCGGAAGCTTGTTCAA 601
|| |||||||| || | |||||||| ||||| | ||||||||||| ||||||||||||
Sbjct 361 GATATACTGACACAGCTAAAGAAGGAAATGGCCACGTCGCATAACCGTAAGCTTGTTCAA 420
Query 602 CCTCCCGAAGGAACTT-TCTTCTA 624
||||| ||||| |||| | |||||
Sbjct 421 CCTCCAGAAGGTACTTGT-TTCTA 443
> Ahg949141 jgi|Araly1|949141|scaffold_801028.1
Length=365
Score = 211 bits (114), Expect = 7e-54
Identities = 146/161 (91%), Gaps = 3/161 (2%)
Strand=Plus/Plus
Query 222 GGAATTTCCGGTTGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTG 281
|||||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||
Sbjct 79 GGAATTTCCGGTTGTTGAAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTG 138
Query 282 TGAGCTATGGAATGGATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCA 341
||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||
Sbjct 139 TGAGCTATGGAATGGATGATGGAGATGACATCTATATGCAATCTTGGACTGGCACCATCA 198
Query 342 TCGGTCCTCACAACGTAACTGTACATGAGGGTCGGATTTAT 382
|||||||||||||| | |||| ||||| ||| | ||||||
Sbjct 199 TCGGTCCTCACAAC--A-CTGTTCATGAAGGTAGAATTTAT 236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35644927395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5