BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36070.1
Length=1929
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482583 jgi|Araly1|482583|fgenesh2_kg.4__1643__AT2G36070.1 2593 0.0
Ahg480879 jgi|Araly1|480879|fgenesh2_kg.3__3580__AT2G20510.1 1513 0.0
> Ahg482583 jgi|Araly1|482583|fgenesh2_kg.4__1643__AT2G36070.1
Length=1872
Score = 2593 bits (1404), Expect = 0.0
Identities = 1743/1897 (92%), Gaps = 62/1897 (3%)
Strand=Plus/Plus
Query 1 AAATGGTATCGAGAGAAACCTCTCTAGGGCTTTAACAGTTTAAGGCAA-ACTTCTGTCTT 59
|||||||||||| |||||||||||||||| | |||||||||| ||| |||||||
Sbjct 1 AAATGGTATCGACAGAAACCTCTCTAGGG------C--TTTAAGGCAACACTCCTGTCTT 52
Query 60 CT--G---GGTTTGGTTTGTTTCTCAAGGAAAAATTTCAACTTTCTTTCTTATTTCAGTA 114
|| | |||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 53 CTGGGTTTGGTTTGGTTTGTTTCTCAAGGAAAAATTTCAACTTTCTTT-TTTTTTCAATA 111
Query 115 AACGAGAGATATGTTTTCAATCTCAATCTGATTCTTTCTCGCAGCGGCTAATTCTAGTGT 174
||| | ||||||||||||||||| ||||||||||||||||||||||||| | | | |
Sbjct 112 AACCAAAGATATGTTTTCAATCTTAATCTGATTCTTTCTCGCAGCGGCT-A----A-T-T 164
Query 175 CGCTAATAGGGTCTCTGTTTCTTCAAA-TTTAGTTCT--T-TAAATTCACTACGAAGATT 230
| ||||||||||||||| |||| |||| | ||| ||||||||||| ||
Sbjct 165 --C---------CTCTGTTTCTTCAAAGTTTA-TTCTAATAAAAAATCACTACGAAGGTT 212
Query 231 TTTGTTATGGCGAGTAGAAAGCTGGTTCGAGATTTACTGATCACAAAGCAGCCTCTTCTC 290
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 213 GTTGTAATGGCGAGTAGAAAGCTGGTTCGAGATTTACTGATCACAAAGCAGCCTCTTTTC 272
Query 291 CAGCAATTGGTGCACCAACGGAGAGTGGGCGCAAGACTAGGTCTTCT-TCAGGGAAATGG 349
||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 273 CAGCAATTGGTGCACCAACGGAGAGTGGGCGCAAGACTAGGGCTTCTGTC-GGGAAATGG 331
Query 350 GTTTGCGAGTCATCGACGGTTTAGTGTTTTCAGTGAGTTCTCGAAGAAGATTAGAGGAGA 409
|| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 332 GTATGCGAGTCATCGCCGGTTTAGTGTTTTCAGTGAGTTCTCGAAGAAAATTAGAGGAGA 391
Query 410 AGCTGATAGCAATCCTGAATTTCAAAAGACAGTGAAGGAGTTCAAGGAAAGAGCA-GAGG 468
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || |
Sbjct 392 AGCTGATAGCAATCCTGAATTTCAAAAAACAGTCAAGGAGTTCAAGGAAAGAGCAGGA-G 450
Query 469 AGTTGCAAGGTGTTAAAGAGGACTTGAAAGTTAGAACGAAACAAACTACTGAGAAGTTGT 528
||||| ||| | ||| |||||||||||||| |||||||||||||||||||||| || |||
Sbjct 451 AGTTGAAAGATATTAGAGAGGACTTGAAAGCTAGAACGAAACAAACTACTGAGCAGCTGT 510
Query 529 ATAAACAAGGTCAAGGCGTCTGGACGGAGGCTGAATCTGTGGCCAAAAAGGTCTCTTCAA 588
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 ATAAGCAAGGTCATGGAGTCTGGACGGAGGCTGAATCTGTGGCCAAAAAGGTCTCTTCAA 570
Query 589 GTGTGAAAGACAAGTTCTCAGCAGCTACAGAAGAGGTCAAGGAGTCATTCAAGCTCGGTA 648
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 571 GTGTGAAAGACAAGTTCTCAGCAGCCACAGAAGAGGTCAAGGAGTCATTCAAGCTCGGAA 630
Query 649 AGGAGGAGAGTGCAGAGTCAGCAAGTTCATCAGGCACAGGAACCACTGAAGGAGAAAAAC 708
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 631 AGGAGGAGAATGCAGAGTCAGCAAGCTCATCAGGCACAGGAACCACTGAAGGAGAAAAAC 690
Query 709 AGCAGCAGCAATCTGGTTCTACGGAGGAGCAAGATACATTTTTTGGAAAATTCAAGTCCA 768
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 691 AGCAGCAGCAATCTGGTACTACGGAGGAGCAAGATACATTTTTTGGAAAATTCAAGTCAA 750
Query 769 GCATTTCTTCACCAAAACTATCTGAGGCGTTTCACAAGCCTCTTGACTTTGCAAAGAAGG 828
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 751 GCATTTCTTCACCAAAAATATCCGAGGCGTTTCACAAGCCTCTTGACTTTGCAAAGAAGG 810
Query 829 GACTTGACATTGTAAAGGATGAATTGCGTGGAAACCCATCTAAAAGGAAGCACCTGGAGT 888
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 811 GACTTGACATTGTAAAGGAGGAATTGCGTGGAAACCCATCTAAAAGGAAGCACCTGGAGT 870
Query 889 ATACACCTCCGCCGCCATTTACAGGTGAGAGAAGTACGAGAACGGAGATGGTAATTATGC 948
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||
Sbjct 871 ATACACCTCCGCCGCCATTTACAGGTGAGAGAAGTACAAGAACGGAGATAGTGATTACGC 930
Query 949 CAACAAAACAGTCTAAGTGGCaaaaaaaaTGGGAATCCTTAAGAGAAAAGATGCAAGGCT 1008
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 931 CAACAAAACAGTCTAAGTGGCAAAAAAAATGGGAATCCTTAAGAGAAAAGATGCAAGGTT 990
Query 1009 ATCCTGTATTTAAACGTCTAAGCGGGATGAGTGAGCCAGTTGTCAACAAGAGCCAAGAGA 1068
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 991 ATCCTGTATTTAAACGTCTAAGCGGGATGAGTGAGCCTGTTGTTAACAAGAGCCAAGAGA 1050
Query 1069 TTGCAGAAGATGTGAGGGAAAAGTGGGAAACCAGTGATAATCCGATTGTTCACAAGATTC 1128
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1051 TTGCAGAAGATGTGATGGAAAAATGGGAAACCAGTGATAATCCGATTGTTCACAAGATTC 1110
Query 1129 AGGACATGAATGAGAGGATCTTTGAGGAAACAGGTTCTGCATCGACTTACAAGGAGATCC 1188
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1111 AGGACATGAATGAGAAGATCTTTGAGGAAACAGGTTCTGCATCGACTTACAAAGAGATAC 1170
Query 1189 GCCGCCGAGATCCATCATTCTCCTTGCCGGACTTTGTT-TCAGAAATTCAGGAAGCCATC 1247
| |||||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 1171 GTCGCCGAGATCCATCATTCTCCTTGCCGGACTTTGCTGT-AGAAATTCAGGAAGCCATC 1229
Query 1248 AGACCGGTCTTGAATGCATATAGTAAGGGAGATGCTAAGACCTTGAAGAAGTATTGCAGC 1307
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1230 AGACCAGTCTTGAATGCATATAGTAAGGGAGATGCTGAGACCTTGAAGAAGTATTGCAGC 1289
Query 1308 AAGGAATTGATTGAACGGTGTACGGCAGAGCACAGAGCTTTC-ACGAGTCAAGGTTATTT 1366
|||||||||||||||||||| ||||||||||||||||||||| | |||||| || |||||
Sbjct 1290 AAGGAATTGATTGAACGGTGCACGGCAGAGCACAGAGCTTTCCA-GAGTCATGGCTATTT 1348
Query 1367 TTTCGATCACAAGCTTCTGCATGTATCTGAAGTTGATATTCAAGAGACAAAGATGATGGG 1426
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1349 TTTCGATCACAAGCTTCTGCATGTATCTGAAGTTGAAATTAAAGAGACAAAGATGATGGG 1408
Query 1427 AACTACTCCAGTAATCATCGTCAGGTTCCAAACGCAAGAAATCTTCTGCGTCCGTGATCA 1486
|||| |||||||||||||| ||||||||||||||||||||||||||||||| || || ||
Sbjct 1409 AACTTCTCCAGTAATCATCATCAGGTTCCAAACGCAAGAAATCTTCTGCGTTCGCGACCA 1468
Query 1487 GGATGGAAAAATCAAAGAAGGAGGCCAGGACACAATACACACAGTGTACTACGACTGGGC 1546
| ||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 1469 GAATGGAAACATCAAAGAAGGAGGCCAGGACACGATACACACGGTGTACTACGATTGGGC 1528
Query 1547 TATGCAACAAGTGGATGCAGCAGAGTTAGGGGAAGATGCGATTTATCCCATTTGGAGGCT 1606
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1529 AATGCAACAAGTGGAGGCAGCAGAGTTAGGGGAGGATGCGATTTATCCCATTTGGAGGCT 1588
Query 1607 CAGAGAGATGTTGAGAGCGGGTGTTCAAGCTCTCATTTAATTCTTCATCATCTTTTAACT 1666
|||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1589 CAGAGAAATGCTGAGAGCGGGTGTTCAAGCTCTCATTTAAATCTTCATCATCTTTTAACT 1648
Query 1667 T-ATAATAAGCTAAGCCCTCTCTCTTTGCAATGTACCATGCAATGTAC-CATTATT-TAC 1723
| ||||||||||||||| |||||||||||| |||||||| | | ||| || | || |
Sbjct 1649 TTATAATAAGCTAAGCC-TCTCTCTTTGCAGTGTACCATT-ATT-TACTCAATCTTGT-- 1703
Query 1724 TCAAAATCTTGTTCACTCGAGAt-tttttttttttCGTTTTCTTCT-CTCT--GGAAGGA 1779
||| ||||| ||| | || ||||||||||| |||||||||| |||| |||||||
Sbjct 1704 TCAC--TCTTGA--ACTATATATATTTTTTTTTTTGGTTTTCTTCTTCTCTCTGGAAGGA 1759
Query 1780 GTGGGTTCCCATGTTTCAGGGGAATAAGTTTTGACAAATATATAAATACATCTCAAGTCT 1839
||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1760 GTGGGTTCCCATGGTTCCGGGGAATAAGTTTTGACAAATATATAAATAGATCTCAAGTCT 1819
Query 1840 TTTTCAAGTTTAGCGAAGTTTGTTGTTTTGTTTGTAT 1876
|||||||||||| ||||||| |||||||||||||||
Sbjct 1820 TTTTCAAGTTTAATGAAGTTTATTGTTTTGTTTGTAT 1856
> Ahg480879 jgi|Araly1|480879|fgenesh2_kg.3__3580__AT2G20510.1
Length=1434
Score = 1513 bits (819), Expect = 0.0
Identities = 1252/1453 (86%), Gaps = 62/1453 (4%)
Strand=Plus/Plus
Query 237 ATGGCGAGTAGAAAGCTGGTTCGAGATTTACTGATCACAAAGCAGCCTCTTCTCCAG-CA 295
||||||| ||||||| | |||||||||||||||||||||||||||||||| | | | ||
Sbjct 1 ATGGCGACTAGAAAGATAATTCGAGATTTACTGATCACAAAGCAGCCTCTTTTAC-GTCA 59
Query 296 ATTGGTGCACCAACG-G---AGAGTGG--GCGCAAGACT-AG-GTCTTCTTCAGGGAAAT 347
| | | |||||||| | ||| || ||||||| | || || |||||| | | |
Sbjct 60 ACTATTCCACCAACGAGTTCTGAGAGGAAACGCAAGA-TCAGAGT-TTCTTCCCGCTATT 117
Query 348 GGGT-TTGCGAGTCATCGACGGTTTAGTGTTTTCAGTGAGTTCTCGAAGAAGATTAGAGG 406
|||| || |||||||||| ||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 118 GGGTATT-CGAGTCATCGCCGGTTCAGTGTTTTCAGCGAGTTCTCGAAGAATATTAGAGG 176
Query 407 AGAAGCTGATAGCAATCCTGAATTTCAAAAG-ACAGTGAAGGAGTTCAAGGAAAGAGCAG 465
|||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||
Sbjct 177 AGAAGCTGATAGCAATCCTGAATTTC-AAAGAACAGTGAAGGAGTTTAAGGAAAGAGCAG 235
Query 466 AGGAGTTGCAAGGTGTTAAAGAGGACTTGAAAGTTAGAACGAAACAAACTACTGAGAAGT 525
| ||||| ||||||| ||||||||| |||||||||||||||||||||| ||||| ||
Sbjct 236 AAGAGTTTAAAGGTGTAAAAGAGGACCTGAAAGTTAGAACGAAACAAACGACTGATCAGC 295
Query 526 TGTATAAACAAGGTCAAGGCGTCTGGACGGAGGCTGAATCTGTGGCC-AAAAAGGTCTCT 584
|||| || |||| | | || || ||||| ||||||||||||| ||| ||||||||||||
Sbjct 296 TGTACAAGCAAGTTGATGGTGTGTGGACTGAGGCTGAATCTG-CGCCGAAAAAGGTCTCT 354
Query 585 TCAAGTGTGAAAGACAAGTTCTCAGCAGCTACAGAAGAGGTCAAGGAGTCATTCAAGCTC 644
|| ||||||||||||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 355 TCTAGTGTGAAAGACAAGCTCTCAGCAGCCACTGAAGAGGTCAAGGAGTCATTCAAGCTC 414
Query 645 GGTAAGGAGGAGAGTGCAGAGTCAGCAAGTTCATCAGGCACAGGAACCACTGAAGGAGAA 704
|| ||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 415 GGGAAGGAGGAGAGTGCAGAGTCAGCAAGTTCATCAGGCACAAGAACCTCTCAAGGAGAA 474
Query 705 AAACAGCAG---CAGCAATCTGGTTCTACGGAGGAGCAAGATACATTTTTTGGAAAATTC 761
||||||||| |||||||| |||||||||||||| | | |||||||||||| |||||||
Sbjct 475 AAACAGCAGCATCAGCAATCAGGTTCTACGGAGGAACTACATACATTTTTTGCAAAATTC 534
Query 762 AAGTCCAG-CATTTCTTCACCAAAACTATCTGAGGCG-TTT-C-A-C------AAG-C-- 807
||||| || | ||||||| ||||| |||| |||||| ||| | | | ||| |
Sbjct 535 AAGTCAAGTC-TTTCTTCGCCAAAGGTATCCGAGGCGTTTTACAAGCTGAAGGAAGCCAA 593
Query 808 -CTC-TTGACTTTGCAAAGAAGGGACTTGACATTGT-AAAGGATGAATTGCGTGGAAACC 864
| | ||||| | | |||||||| |||||||||||| ||| ||||| |||||||||||||
Sbjct 594 ACCCTTTGACATAGTAAAGAAGGCACTTGACATTGTGAAA-GATGAGTTGCGTGGAAACC 652
Query 865 CATCTAA-AAGGAAGCACCTGGAGTATACACCTCCGCCGCCATTTACAGGTGAGAGAAGT 923
|||| || || |||| |||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 653 CATC-AAGAAAGAAGTTCCTGGAATATACACCTCCCCCGCCATTCACAGGTGAGAGAAGT 711
Query 924 ACGAGAACGGAGATGGTAATTATGCCAACAAAACAGTCTAAGTGGCaaaaaaaaTGGGAA 983
| ||||||||||||||| ||| ||||||||||||||||||||||||| |||| ||||||
Sbjct 712 ATGAGAACGGAGATGGTTGTTACGCCAACAAAACAGTCTAAGTGGCAACAAAAGTGGGAA 771
Query 984 TCC-TTAAGAGAAAAGATGCAAGGCTATCCTGTATTTAAACGTCTAAGCGGGATGAGTGA 1042
||| |||| ||||||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct 772 TCCTTTAA-AGAAAAGATGCAAGGCTCTCCTGTATTCAAACGTCTAAGCAGGATGAGTGA 830
Query 1043 GCCAGTTGTCAACAAGAGCCAAGAGATTGCAGAAGATGTGAGGGAAA-AGTGGGAAACCA 1101
||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 831 GCCTGTTGTCAACAAGAGCCAAGAGATTGCAGAAGATGTGAGGGAAATA-TGGGAAACCA 889
Query 1102 GTGATAATCCGATTGTTCACAAGATTCAGGACATGAATGAGAGGATCTTTGA-GGAAACA 1160
||||||||||||||||||||||||||||||| |||||||||| | |||| || |||||||
Sbjct 890 GTGATAATCCGATTGTTCACAAGATTCAGGATATGAATGAGATGTTCTT-GAAGGAAACA 948
Query 1161 GGTTCTGCATCGACTTACAAGGAGATCCGCCGCCGAGATCCATCATTCTCCTTGCCGGAC 1220
| ||||||||| |||||||| ||||| ||| |||||||||||| ||||||||||| |||
Sbjct 949 GATTCTGCATCAACTTACAAAGAGATACGCAACCGAGATCCATCGTTCTCCTTGCCAGAC 1008
Query 1221 TTTGTTTCAGAAATTCAGGAAGCCATCAGACCGGTCTTGAATGCATATAGTAAGGGAGAT 1280
|||| | |||||||| |||||| ||||||||| |||||||||||||| ||| ||||||||
Sbjct 1009 TTTGCTGCAGAAATTGAGGAAGTCATCAGACCAGTCTTGAATGCATACAGTGAGGGAGAT 1068
Query 1281 GCTAAGACCTTGAAGAAGTATTGCAGCAAGGAATTGATTGAACGGTGTACGGCAGAGCAC 1340
| | ||||||||||||||||||||||||||||| ||||||||||||| || ||||| | |
Sbjct 1069 GTTGAGACCTTGAAGAAGTATTGCAGCAAGGAAGTGATTGAACGGTGCACCGCAGAACTC 1128
Query 1341 AGAGCTTTCACGAG-TCAAGGTTAT-TTTTTCGATCACAAGCTTCTGCATGTATCTGAAG 1398
| ||||| | | | ||| |||| | ||||||||| |||||||||||||| ||||||| |
Sbjct 1129 ACAGCTTAC-CAAACTCATGGTT-TCTTTTTCGATAACAAGCTTCTGCATATATCTGACG 1186
Query 1399 TT-GA-TATTCAAGAGACAAAGATGATGGGA-ACTACTCCAGTAATCATCGTCAGGTTCC 1455
|| || | |||| | |||||||||||||||| | | | ||| ||||||||| || |||||
Sbjct 1187 TTCGAGT-TTCA-GTGACAAAGATGATGGGAGATTCC-CCAATAATCATCGCCAAGTTCC 1243
Query 1456 AAACGCAAGAAATCTTCTGCGTCCGTGATC-AGGATGGAAAAATCAAAGAAGGAGGCCAG 1514
||||||||||||||| |||||| || || | || ||||| ||||| ||||||||||||||
Sbjct 1244 AAACGCAAGAAATCTACTGCGTGCGCGA-CGAGAATGGAGAAATCCAAGAAGGAGGCCAG 1302
Query 1515 GACACAATACACACAGTGTACTACGACTGGGCTATGCAACAAGTGGATGCAGCAGAGTTA 1574
||||| |||||||| |||||| |||| ||||| |||||||||||||| ||| |||||||
Sbjct 1303 GACACGATACACACGGTGTACCACGAATGGGCAATGCAACAAGTGGAGGCAACAGAGTTT 1362
Query 1575 GGGGAAGATGCGATTTATCCCATTTGGAGGCTCAGAGAGATGT-TGAGAGCGGGTGTTCA 1633
||||||||||| |||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 1363 GGGGAAGATGCTATTTATCCCATTTGGAGGCTCAGAGAGATGCGT-AGAAATGGTGTTCA 1421
Query 1634 AGCTCTCATTTAA 1646
|||||||||||||
Sbjct 1422 AGCTCTCATTTAA 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72485736235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5