BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36080.1
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934233 jgi|Araly1|934233|scaffold_402221.1 1203 0.0
> Ahg934233 jgi|Araly1|934233|scaffold_402221.1
Length=753
Score = 1203 bits (651), Expect = 0.0
Identities = 699/722 (97%), Gaps = 4/722 (1%)
Strand=Plus/Plus
Query 141 tctttctctctccctctctTTCAAATGTCAATAAACCAATACTCAAGCGATTTCCACTAC 200
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 TCTTTCTCTCT--CTCTCTTTCAAATGTCAATAAACCAATACTCAAGCGATTTTCACTAC 58
Query 201 CATTCTCTCATGTGGcaacaacagcagcaacaacaacaacaCCAAAACGACGTCGTGGAA 260
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 59 CATTCTCTCATGTGGCAACAACAGCAGCAACACCACCACCACCAAAACGACGTCGTGGAA 118
Query 261 GAAAAAGAAGCTCTTTTCGAGAAACCCTTAACCCCAAGTGACGTCGGAAAACTCAACCGC 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GAAAAAGAAGCTCTTTTCGAGAAACCCTTAACCCCAAGTGACGTCGGAAAACTCAACCGC 178
Query 321 CTCGTCATCCCAAAACAGCACGCCGAGAGATACTTCCCACTAGCGGCCGCCGCCGCAGAC 380
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 179 CTCGTCATCCCAAAACAGCACGCCGAAAGATACTTCCCACTAGCGGCCGCAGCCGCAGAC 238
Query 381 GCCGTGGAGAAAGGACTTCTCCTCTGCTTTGAGGACGAGGAAGGTAAACCATGGAGATTC 440
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 239 GCGGTGGAGAAAGGACTTCTCCTCTGCTTCGAGGACGAGGAAGGTAAACCATGGAGATTC 298
Query 441 AGATACTCGTACTGGAACAGTAGCCAGAGTTATGTCTTGACCAAAGGCTGGAGCAGATAC 500
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 299 AGATACTCGTACTGGAACAGTAGCCAGAGTTATGTCTTGACCAAAGGCTGGAGTAGATAC 358
Query 501 GTCAAGGAGAAGCACCTTGACGCCGGAGACGTCGTTCTCTTCCATCGACACCGTTC-AGA 559
||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | |
Sbjct 359 GTCAAGGAGAAGCACCTTGACGCCGGAGACGTCGTTCTCTTCCATCGCCACCGTGCTA-A 417
Query 560 CGGCGGAAGATTCTTCATTGGCTGGAGAAGACGCGGTGACTCTTCTTCCTCCTCCGACTC 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CGGCGGAAGATTCTTCATTGGCTGGAGAAGACGCGGTGACTCTTCTTCCTCCTCCGACTC 477
Query 620 TTATCGCCATGTTCAATCCAATGCCTCGCTCCAATATTATCCTCATGCAGGGGCTCAAGC 679
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 478 TAATCGCCATGTTCAATCCAATGCCTCGCTTCAATATTATCCTCATGCAGGGGCTCAAGC 537
Query 680 GGTGGAGAGCCAAAGAGGCAACTCGAAGACATTAAGACTGTTCGGAGTGAACATGGAGTG 739
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 538 GGTGGAGAGCCAGAGAGGGAACTCGAAGACATTGAGACTGTTCGGAGTGAACATGGAGTG 597
Query 740 CCAGCTAGATTCGGACTGGTCCGAGCCATCCACACCTGACGGTTCTAACACATATACAAC 799
||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 598 CCAGCTAGACTCAGACTGGTCCGAGCCATCCACACCTGACGGTTCTAGCACATATACAAC 657
Query 800 CAATCACGACCAGTTTCATTTCTACCCTCAACAACAACACTATCCTCCTCCGTACTACAT 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CAATCACGACCAGTTTCATTTCTACCCTCAACAACAACACTATCCTCCTCCGTACTACAT 717
Query 860 GG 861
||
Sbjct 718 GG 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46776819159
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5