BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36090.1
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482585 jgi|Araly1|482585|fgenesh2_kg.4__1645__AT2G36090.1 1530 0.0
> Ahg482585 jgi|Araly1|482585|fgenesh2_kg.4__1645__AT2G36090.1
Length=1037
Score = 1530 bits (828), Expect = 0.0
Identities = 922/968 (95%), Gaps = 4/968 (0%)
Strand=Plus/Plus
Query 87 CCTTCTCCCCCTCTACCACCGTAACAGATTTAATCTCCACCGTCCATGACGACATCATAG 146
||| |||| |||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 72 CCTCCTCCTCCTCTACCACCGTAACAGATTTAATCTCCACCGTCCATCATGACATCATAG 131
Query 147 AGTCTCACATCTTGACACGTCTCGACGGCGCAACCTTAGCATCCGTCTCTTGCGCCTCCT 206
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 132 AGTCTCACATCTTGACACGTCTCGACGGCGCAACCTTAGCCTCCGTCTCTTGCGCCTCCT 191
Query 207 CACATCTTCATCATCTCGCTTCCAATGAGATCCTCTGGTCCAAAATCTGCCGATCCACGT 266
|| ||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 192 CATATCTTCACCATCTCGCTTCCAATGAGATCCTCTGGTCCAAAATATGCCGGTCCACGT 251
Query 267 GGCCTTCTTGCTCCGGTGGTTCTCGTTCTTTCTTCTCCGACGCTTATTCTATGGTGGAAA 326
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 252 GGCCTTCTTGCTCCGATGGTTCTCGTTCTTTTTTCTCCGACGCTTATTCTATGGTTGAAA 311
Query 327 CCGCCGGTACAGTCTCTGATCTCGACCGTCCGTTTCCGGAATTGATCTCCGCCGTGGATC 386
|||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 312 CCGCCGGTTCAGTTTCTGATCTCGACCGTCCGTTTCCCGAATTGATCTCCGCCGTGGATC 371
Query 387 TTCACTACAGAGGGAAGTTGATTTTTAGTAGAGTCGTGAAGACGGAGACTACGACGGCGT 446
||||||||| |||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 372 TTCACTACAAAGGGAAATTGATTTTCAGTAGAGTCGTGAAGACGGACACTACGACGGCGT 431
Query 447 GGTTTAAGAGTTCGCCGTTGAGGATTGATCTGGTGGATACAAAGGATACGGTGGCGACGC 506
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 432 GGTTTAAGAGCTCGCCGTTGAGGATTGATCTGGTGGATACGAAGGATACGGTGGCGACGC 491
Query 507 CGATTAAGAGAAGACAGAGGACGGAAGACACGTGTCGTGATCTAGAGAAGGATTTGACTT 566
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 CGATTAAGAGAAGACGGAGGACGGAAGACACGTGTCGTGATCTAGAGAAGGATTTGACTT 551
Query 567 TGAGCTGGATCGTGATTGATCCGATCGGGAAACGAGCGGCGAATATTTCGAGTCACCGGC 626
| |||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||
Sbjct 552 TAAGCTGGATCGTGATTGATCCAATCGGGAAACGAGCGGCGAATCTATCGAGTCACCGGC 611
Query 627 CGGTGTCGGTGCAGAGGAACTGGATAAGCGGAGAAGTGGAGGCGCAATTCGCGACGGTGG 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 CGGTGTCGGTGCAGAGGAACTGGATAAGCGGAGAAGTGGAGGCGCAATTCGCGACGGTGG 671
Query 687 TGGGGGCGGTGGAGTGTGTGATCACGGTGGTCACGTGCGGTGAGGAGGAGATGCACGTGA 746
||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 672 TGGAGACGGTGGAGTGTGTGATCACGGTGGTCACGTGCGGAGAGGAGGAGATGCACGTGA 731
Query 747 GGGAAGTGAGTCTCAAGGTAGAGAAGATGGAGGGAACGCATTTAAACGGGAGGGACAGTT 806
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 732 GGGAAGTGAGTCTCAAGGTAGAGAAGATGGAGGGAACGCATTTGAACGGGAGGGACAGTT 791
Query 807 TGGTTATTTTAAGGAGTGTCATGGAGGGTAAAAGGGTAAATggaagtaggagggaagtag 866
|||| ||||| ||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 792 TGGTCATTTTGAGGAGTGTCATGGAGGGTAAAAGGGTAAATGGAAGAAGAAGAGAAGTAG 851
Query 867 aatcgaagaaga-gacacgaagagtttatggagaagaagagagagatgaaggagaagaag 925
||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 852 AATCGAAGA-GAAGACACGAAGAGTTTATGGAGAAGAAGAGAGAGGTGAAGGAGAAGAAG 910
Query 926 atgagggtagaaTCGGTATTTGACATTTTGACTGTAGCTTTTGGTATTTTAGGCTTTGTG 985
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 911 ATGAGGGTAGAATCGGTATTTGACATTTTGTCTGTAGCTTTTGGGATTTTAGGCTTTGTG 970
Query 986 T-TGCTTGTTGTGTTTTGTCTTTGGAGAACCTCTATATGAATCAGAAGCTTTTAAGTTGA 1044
| | |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 971 TCTT-TTGTTGTGCTTTGTCTTTGGAGAACCTCTATATGAATCGGAAGCTTTTAAGTTAA 1029
Query 1045 ACCAAAAG 1052
||||||||
Sbjct 1030 ACCAAAAG 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40181554518
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5