BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36100.1
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482586 jgi|Araly1|482586|fgenesh2_kg.4__1646__AT2G36100.1 1158 0.0
> Ahg482586 jgi|Araly1|482586|fgenesh2_kg.4__1646__AT2G36100.1
Length=815
Score = 1158 bits (627), Expect = 0.0
Identities = 768/832 (92%), Gaps = 25/832 (3%)
Strand=Plus/Plus
Query 32 acacaaagcacacacTTTTTCTTTCTTTTAAACCCCAATTGCAAGAGAAAATGGCGAAAG 91
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACACAAAGAACACACTTTCTCTTTCTTTTAAACCCCAATTGCAAGAGAAAATGGCGAAAG 60
Query 92 AGTCCACCACCATCGACGTCGGCGAGCCAAGCACTGTTACCAAAAGTTCAAGCCATGTCG 151
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 AGTCCACCACCATTGACGTCGGCGAGCCAAGCACTGTCACCAAAAGTTCAAGCCATGTCG 120
Query 152 TAAAGGACGCGAAGAAGAAGGGCTTTGTGGCAGTCGCCTCAAGAGGTGGTGCCAAGAGAG 211
| ||||||||||||||| ||||||| |||| || ||||||||||||||||||
Sbjct 121 T---------GAAGAAGAAGGGCTTCGTGGCAGCCGCCGCAGGAGGTGGTGCCAAGAGAG 171
Query 212 GTTTGGCTATATTCGATTTCCTCCTCCGTTTGGCGGCCATAGCAGTCACTATTGGGGCTG 271
|||| || |||||||||||||||||||||||||||||||||| |||||| || || ||||
Sbjct 172 GTTTAGCCATATTCGATTTCCTCCTCCGTTTGGCGGCCATAGGAGTCACCATCGGAGCTG 231
Query 272 CCTCTGTCATGTACACCGCCGAGGAAACTCTTCCCTTCTTTACTCAGTTCCTCCAGTTCC 331
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 232 CCTCTGTCATGTACACCGCCCAGGAGACTCTTCCCTTCTTTACTCAGTTCCTCCAGTTCC 291
Query 332 AAGCCGGTTACGATGACCTTCCTGCGTTTCAGTACTTTGTGATAGCCGTAGCCGTAGTCG 391
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 292 AAGCCGGTTACGATGACCTTCCTGCATTTCAGTACTTTGTGATAGCCGTAGCCATAGTCG 351
Query 392 CTAGCTATCTCGTCCTTTCACTTCCATTCTCCATCGTATCCATTGTCCGTCCACAT-GCT 450
|||||||||||||||||||||||||||||||||||||| | ||||||||||||| | |||
Sbjct 352 CTAGCTATCTCGTCCTTTCACTTCCATTCTCCATCGTAACTATTGTCCGTCCAC-TCGCT 410
Query 451 GTCGCGCCCCGGCTGATCCTCCTCAT-TTGCGATACTCTGGTCGTGACGCTCAACACATC 509
|||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||
Sbjct 411 GTCGCGCCTCGGCTGATCCTCCTCATCTT-CGATACTTTGGTCGTGACGCTCAACACATC 469
Query 510 AGCAGCAGCAGCGGCAGCATCAATCACCTACCTTGCACACAACGGCAACCAAAGCACCAA 569
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 470 AGCAGCAGCAGCCGCAGCATCAATCGTCTACCTTGCACACAACGGCAACCAAAGCACCAA 529
Query 570 CTGGCTCCCTATCTGTCAGCAGTTTGGAGACTTCTGCCAGAACGTTAGCACCGCGGTTGT 629
||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||
Sbjct 530 CTGGCTCCCTATCTGTCAGCAGTTTGGAGACTTTTGCCAAAACGTGAGCACCGCTGTTGT 589
Query 630 GGCTGATTCTATCGCGATTCTCTTCTTCATCGTTCTTATCATCATCTCAGCCATCGCCCT 689
|| | |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 590 AGCAGCTTCTATCGCGATTCTCTTCTTCATTGTTCTCATCATCATCTCCGCCATCGCCCT 649
Query 690 CAAGAGGCATTGATTTCATCTTT---AAGTGTCAAGATCGTAATGTACTTGTTGTATATG 746
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 650 CAAGAGGCACTGATTTCATCTTTTTTAAGTGTCAAGATCGTAATGTACTTGTTGTATATG 709
Query 747 TTTGTGGCTTTGTGTAACATGAGAATTGGTATTATTGTGTGAAAATGTAATTGAAGTTGT 806
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 710 TTTGTGGCTTTGTGTAACATGACAATTGGTATTATTGTGTGAAAATGTAATTGAAGTTGT 769
Query 807 TTTATGTTTT--AAA-GAAATTTGTCTTTTCTTTTGGTTCAACTTAAAAGCT 855
|| ||||||| ||| |||||||| ||||| |||| ||||||||||||
Sbjct 770 TT-ATGTTTTTTAAAAGAAATTTGACTTTT-----GGTTTAACTTAAAAGCT 815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31642021110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5