BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36110.1
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901459 jgi|Araly1|901459|Al_scaffold_0004_2109 555 3e-157
Ahg901060 jgi|Araly1|901060|Al_scaffold_0004_1710 348 5e-95
> Ahg901459 jgi|Araly1|901459|Al_scaffold_0004_2109
Length=462
Score = 555 bits (300), Expect = 3e-157
Identities = 393/438 (90%), Gaps = 6/438 (1%)
Strand=Plus/Plus
Query 368 ACACCCGGTGGTTCCGATCCTCCACCGGATATTCTCCAACTATGTGTTGGTAACCGCTGT 427
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ACACCCGGTGGTTCCGATCCTCCACCGGATATTCTCCAACTATGTGTTGGTATCCGCTGT 60
Query 428 CTCATCATCCAGTTGTCTCACTGTAAACGCATTCCTGAGGTCCTTCGAAGTTTCTTGGAA 487
|||||||||||||||| ||||||||| ||||| || || ||||||||||||||||||||
Sbjct 61 CTCATCATCCAGTTGTTTCACTGTAAGCGCATGCCCGACGTCCTTCGAAGTTTCTTGGAG 120
Query 488 GATGAGACAATCACTTTTGTCGGCGTCTGGAACAGCCAAGACCAGGGCAAGCTCGAAAGA 547
||||||||||||||||| || || ||||||||||| |||||| ||| || ||||| |||
Sbjct 121 GATGAGACAATCACTTTCGTTGGAGTCTGGAACAGTCAAGACAAGGATAATCTCGAGAGA 180
Query 548 TTCCGCCATCAGTTGGAGATATGGAGACTTCTAGACATAAGGCACTATCTGCCTACGAGG 607
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||
Sbjct 181 TTCCGCCATCAGTTGGAGATATGGAGACTTCTCGACATAAGGCACTATCTGGCTACGTGG 240
Query 608 CTCCTCAATAGTTCGTTTGAGAAGATT-G-TA-GAGGAGTGTTTGGGGTACAAGGGAGTG 664
|||| |||||||||||||||| || | | || | ||||||||| || ||||||||
Sbjct 241 CTCCGCAATAGTTCGTTTGAGCAGGGCCGGTCCGA--A-TGTTTGGGGCACGAGGGAGTG 297
Query 665 AGGAAAGATAAGGAGATATGTATGAGTAATTGGGGTGCTCGTAGCCTTTCCCATGATCAG 724
|||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||||||
Sbjct 298 AGGAAAGATAAGGAGATATGTAGGAGTAATTGGGGAGCTCGCAGCCTTTCTCATGATCAA 357
Query 725 ATTGTTCAGGCGTCAGATGATGTCTATGTTTGCTGCAAGCTCGGTGTTAAGGAATGTATC 784
||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| || ||
Sbjct 358 ATTGTTCAGGCGTCACATGATGTCTATGTTTTCTGCAAGCTTGGTGTTAAGGAACGTCTC 417
Query 785 TGGAAAGAGCGCTCGAAT 802
||||||||| |||| |||
Sbjct 418 TGGAAAGAGAGCTCTAAT 435
> Ahg901060 jgi|Araly1|901060|Al_scaffold_0004_1710
Length=402
Score = 348 bits (188), Expect = 5e-95
Identities = 318/376 (85%), Gaps = 27/376 (7%)
Strand=Plus/Plus
Query 421 CCGCTGTCTCATCATCCAGTTGTCTCACTGTAAAC-GCATTCCTGAGGTCCTTCGAAGTT 479
||||||||||||||||||||||||||||||| ||| ||| ||||| ||||| ||||||
Sbjct 36 CCGCTGTCTCATCATCCAGTTGTCTCACTGT-AACTACATCCCTGACATCCTTAGAAGTT 94
Query 480 TCTTGGAAGAT-GAGACAATCACTTTTGTCGGCGTCTGGAACAGCCAAGACCAGGGCAAG 538
||||||||||| | |||||||||| |||| || |||||| | | | | | |||
Sbjct 95 TCTTGGAAGATCG-GACAATCACTGTTGTTGGAGTCTGG-A-A---TA-A-C----CAA- 141
Query 539 CTCGAAAGATTCCGCCATCAG-TTGGAGATATGGAGACTTCTAGACATAAGGCACTATCT 597
|| ||||||| || | | |||||||||||||| ||| | ||||||||| |||||||
Sbjct 142 ---GAGAGATTCCATCAAC-GATTGGAGATATGGAGGCTTGTCGACATAAGGGACTATCT 197
Query 598 GCCTACGAGGCTCCT--CAATAGTTCGTTTGAGAAGATTGTAGAGGAGTGTTTGGGGTA- 654
||||||| |||| || ||| |||||||||||| |||||| |||||||||||||| ||
Sbjct 198 GCCTACGTGGCT-CTGGAAAT-GTTCGTTTGAGATGATTGTGGAGGAGTGTTTGGGATAC 255
Query 655 CAAGGGAGTGAGGAAAGATAAGGAGATATGTATGAGTAATTGGGGTGCTCGTAGCCTTTC 714
||| |||||||||||||||||||||||||||| |||||| ||||| ||||||| ||||||
Sbjct 256 CAA-GGAGTGAGGAAAGATAAGGAGATATGTAGGAGTAACTGGGGAGCTCGTAACCTTTC 314
Query 715 CCATGATCAGATTGTTCAGGCGTCAGATGATGTCTATGTTTGCTGCAAGCTCGGTGTTAA 774
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 315 TGATGATCAGATTGTTCAGGCGTCACATGATGTCTATGTTTGCTGCAAGCTCGGTGTTAA 374
Query 775 GGAATGTATCTGGAAA 790
|||| || ||||||||
Sbjct 375 GGAACGTGTCTGGAAA 390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36216771150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5