BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36120.1
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482587 jgi|Araly1|482587|fgenesh2_kg.4__1647__AT2G36120.1 1467 0.0
> Ahg482587 jgi|Araly1|482587|fgenesh2_kg.4__1647__AT2G36120.1
Length=1028
Score = 1467 bits (794), Expect = 0.0
Identities = 965/1043 (93%), Gaps = 30/1043 (3%)
Strand=Plus/Plus
Query 1 ACAACTAAATCTTAAGTAGAAAGAGTGAAACATGGCTAATCACAAAAATCTCTTCTTTCT 60
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1 ACAACTAAATCTTAAGTAGAAAGAGTG-AACATGGCTAGTCACAAAAATCTCTTCTTTCT 59
Query 61 ATGTTTCTTAATAGGTTTAGGGTTATGTTCTGCTAGACGAGCACTACTCTCCTCCTCTGA 120
||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 60 ATGTTTCATAATAGGTTTAGGGTTATGTTCTGCAAGACGAGCACTTCTCTCCTCCTCTGA 119
Query 121 ATCCGAGGCTGAAGTCGCTGCCTATGGCGTGAATAGTGGTTTAAGTGCT-GGTCTTGGTG 179
||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||
Sbjct 120 ATCCGAGGCTGAAGTCGCTGCCTATGGCGTGAAAAGTGGTTTAAGTG-TCGGTGTTGGTG 178
Query 180 TTGGTATTGGTGGTGGTCCTGGAGGAGGATCTGGTTACGGAGGTGGAAGCGGTGAAGGCG 239
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 179 TTGGTATAGGTGGTGGTGCTGGAGGAGGATCTGGTTACGGAGGTGGAAGCGGTGAAGGTG 238
Query 240 GTGGAGCtggtgggcatggcgagggacatattggtgggggcggaggtggtggacatggtg 299
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 239 GTGGAGCTGGTGGGCATGGTGAGGGACATATTGGTGGAGGCGGAGGTGGTGGACATGGTG 298
Query 300 gtggtgctggcggaggaggaggtggtggccctggaggaggctacggaggtggaagcggtg 359
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 299 GTGGTGCTGGCGGAGGAGGTGGTGGTGGTCCTGGAGGAGGCTACGGAGGTGGAAGCGGTG 358
Query 360 aaggtggtggagCTGGATACGGAGGCGGAGAAGCtggtgggcatggcggaggtggaggag 419
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 359 AAGGTGGTGGAGCTGGATACGGAGGCGGAGAAGCTGGTGGGCATGGTGGAGGTGGAGGAA 418
Query 420 gcggagcaggcggcggtggaggtggtggtggtggtgcacatggtggaggatacggtggtg 479
|||||||||||||||||||||| ||||| |||| ||||||||||||| ||||||||||
Sbjct 419 GCGGAGCAGGCGGCGGTGGAGGAGGTGGCGGTG---CACATGGTGGAGGGTACGGTGGTG 475
Query 480 gacaaggtgctggtgctggaggaggatatggaggtggaggtgccgg-g--gg---acatg 533
||||||||| ||||||||||||||||||||||||||||||||| || | || | |||
Sbjct 476 GACAAGGTGGTGGTGCTGGAGGAGGATATGGAGGTGGAGGTGCAGGTGCCGGTGGATATG 535
Query 534 gaggtggtggaggcggtggaaatggtgggggtggaggaggaggttctggcgaaggaggag 593
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 536 GAGGTGGTGGAGGCGGTGGAAATGGTGGTGGTGGAGGAGGAGGTTCTGGCGAAGGAGGAG 595
Query 594 CTCAtggtggtggttacggagcaggaggtggagctggagagggatacggtggtggtgctg 653
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct 596 CTCATGGTGGTGGTTACGGAGCAGGGGGTGGAGCTGGAGAGGGATATGGTGGTGGTGCAG 655
Query 654 gagctggtggacatggtggtggaggaggaggcggtggtggttccggaggtggaggaggag 713
|||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||||||
Sbjct 656 AAGCTGGAGGACATGGTGGAGGAGGAGGAGTTGGTGGTGGTGCCGGAGGTGGAGGAGGAG 715
Query 714 gaggtggaggtTATGCTGCTGCTTCTGGATACGGTCACGGTGGGGGTGCTGGTGGTGGAG 773
| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||
Sbjct 716 GTGGTGGAGGTTATGCTGCTGCTTCAGGATATGGTCACGGTGGCGGTGCTGGTGGCGGAG 775
Query 774 AAGGAAGCGGTGGCTATGTACCATGAAAAATTATCTATATGGAGTGTAACGGCAATTGAG 833
|||||||||||||||||||||| ||||||| ||||| ||||||| | ||||| ||||||
Sbjct 776 AAGGAAGCGGTGGCTATGTACCCTGAAAAAATATCTCTATGGAGCATGACGGCCATTGAG 835
Query 834 TGAAGTGTCATATCTCGTAAGGGACTA-TATA----GTTTCACGATTTATA--TGTGGCA 886
||||||||||||||||||||||||||| |||| |||||| ||| |||| |||||||
Sbjct 836 TGAAGTGTCATATCTCGTAAGGGACTACTATATATAGTTTCAAGATATATAAATGTGGCA 895
Query 887 ATAAATAGAGTAATCCTTCGTATAATAAGCCGT-AGAAAGGCGGCTATTGTTGAAGTTTT 945
|||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 896 ATAAATAGAGTATTCCTTCGTATAATAAGCCGTTA-AAAGGCGGCTATTGTTGAAGTTTT 954
Query 946 TAAATTGTACCACGACCAATATTGTTGTAAGCTACTACTACGTGTGTATCAAGTTTTTAT 1005
|||||||||||| | ||||||||||||||||||| |||||| ||||||||||||
Sbjct 955 TAAATTGTACCA--A----TATTGTTGTAAGCTACTAC---GTGTGTGTCAAGTTTTTAT 1005
Query 1006 AAATGGAAATCATAGTTGTTCCT 1028
||||||| |||||||||||||||
Sbjct 1006 AAATGGAGATCATAGTTGTTCCT 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38275408668
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5