BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36130.1
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345344 jgi|Araly1|345344|fgenesh1_pg.C_scaffold_4001686 673 0.0
> Ahg345344 jgi|Araly1|345344|fgenesh1_pg.C_scaffold_4001686
Length=474
Score = 673 bits (364), Expect = 0.0
Identities = 456/496 (92%), Gaps = 23/496 (5%)
Strand=Plus/Plus
Query 91 ATGTCGGCAAGACCTGAAGGAAGTCCGCCGGAGGTTACGCTCGAGACCTCCATGGGTCCT 150
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGGCGAGACCTGAAGGAAGTCCGCCGGAGGTTACGCTCGAGACCTCCATGGGTCCT 60
Query 151 TTCACCGTCGAGATGTATTACAAACACTCCCCGAGAACTTGCCGGAACTTCCTTGAGCTA 210
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct 61 TTCACCGTCGAGATGTATTATAAACACTCCCCGAGAACTTGCCGGAACTTCGTTGAACTA 120
Query 211 TCCCGGAGAGGTTACTATGACAACGTTCTGTTTCACAGAATCGTCAAGGATTTCATTGTG 270
|||| | | | | | | | ||||||||||||||||||||||||||||
Sbjct 121 TCCC------G--A--A-G---A-G----G--TCACAGAATCGTCAAGGATTTCATTGTG 159
Query 271 CAAGGTGGGGATCCTACAGGAACTGGAAGAGGTGGTGAATCCATTTATGGTTCGAAGTTT 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 CAAGGTGGGGATCCTACAGGAACTGGAAGAGGTGGTGAATCCATTTATGGTTCGAAGTTT 219
Query 331 GAGGATGAGATAAACAAAGAGTTGAAGCACACAGGAGCCGGAATTTTATCAATGGCGAAC 390
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 220 GAGGATGAGATAACCAAAGAGTTGAAGCACACAGGAGCTGGAATTTTATCAATGGCAAAC 279
Query 391 GCTGGTCCTAATACAAATGGGAGTCAATT-TTTCATCACCTTAGCCCCACAACCGTCCTT 449
||||||||||||||||||||||||||||| ||| || || ||||| ||||||||||||||
Sbjct 280 GCTGGTCCTAATACAAATGGGAGTCAATTCTTT-ATTACTTTAGCGCCACAACCGTCCTT 338
Query 450 GGATGGAAAACACACAATATTTGGTAGAGTGTGCCGAGGCATGGAGGTGATCAAGAGGCT 509
||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 339 GGATGGAAAGCACACAATATTTGGCAGAGTGTGCCGTGGTATGGAGGTGATCAAGAGGCT 398
Query 510 CGGTAGTGTCCAAACCGATAACACCGACAGGCCGATCCATGAAGTGAAGATTCTAAGGAC 569
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 399 CGGTAGTGTCCAAACCGATAACACCGACAGGCCAATCCATGAAGTGAAGATTCTGAGGAC 458
Query 570 CAAAGTGATCGATTGA 585
|||||||||||||||
Sbjct 459 TAAAGTGATCGATTGA 474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30422087766
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5