BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36160.1
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482591 jgi|Araly1|482591|fgenesh2_kg.4__1651__AT2G36160.1 885 0.0
Ahg938148 jgi|Araly1|938148|scaffold_502339.1 549 1e-155
Ahg325233 jgi|Araly1|325233|fgenesh1_pm.C_scaffold_6000453 279 1e-74
> Ahg482591 jgi|Araly1|482591|fgenesh2_kg.4__1651__AT2G36160.1
Length=678
Score = 885 bits (479), Expect = 0.0
Identities = 599/654 (92%), Gaps = 19/654 (3%)
Strand=Plus/Plus
Query 42 TGTGTAGGCGGAACTAC-AGAACCAAGAGCCTCTTTCTAATCGGAGTTAC-TTTAATCCC 99
||||||||||||||| | ||||||||||||||||| | |||| ||||||| ||||||| |
Sbjct 1 TGTGTAGGCGGAACT-CAAGAACCAAGAGCCTCTTCCAAATCTGAGTTACTTTTAATCGC 59
Query 100 CTTGAACCA--T-GTCAAAGAGAAAGACTAAAGAGCCAAAGGTCGATGTTGTGACTCTTG 156
||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CTTGAACCATGTCGTCGAAGAGAAAGACTAAAGAGCCAAAGGTCGATGTTGTGACTCTTG 119
Query 157 GACCATCTGTTCGTGAGGGAGAGCAAGTTTTCGGTGTTGTCCACATCTTTGCTTCATTCA 216
||||| ||||| |||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 120 GACCAAGTGTTCTTGAGGGAGAGCAAGTTTTTGGTGTTGTCCACATCTTTGCATCATTCA 179
Query 217 ACGACACTTTCATTCATGTTACTGATTTGTCTGGTCGTGAAACTCTTGTCCGTATCACCG 276
||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 180 ACGACACATTCATTCATGTTACTGATTTGTCTGGACGTGAAACACTTGTCCGTATCACTG 239
Query 277 GTGGAATGAAGGTGAAAGCTGATAGAGATGAGTCCTCACCTTACGCAGCTATGCTTGCAG 336
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 240 GTGGAATGAAGGTGAAAGCTGATAGGGATGAGTCCTCACCTTATGCAGCTATGCTTGCTG 299
Query 337 CACAGGATGTTGCTCAGCGATGCAAGGAACTTGGTATCACTGCCATGCATGTGAAGCTCC 396
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 300 CACAGGATGTCGCTCAGCGATGCAAGGAACTTGGAATCACTGCCATGCATGTGAAGCTCC 359
Query 397 GTGCCACAGGTGGAAACAAGACCAAGACACCTGGTCCTGGAGCACAGTCTGCCCTTAGAG 456
||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 360 GTGCCACCGGTGGAAACAAGACCAAAACACCTGGTCCTGGAGCTCAGTCTGCTCTTAGAG 419
Query 457 CCCTTGCTCGTTCCGGCATGAAAATAGGCCGTATTGAGGATGTTACTCCCATCCCAACAG 516
| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 CTCTTGCTCGTTCTGGCATGAAAATAGGACGTATTGAGGATGTTACTCCCATCCCAACAG 479
Query 517 ACAGTACCCGCAGAAAGGGTGGTAGAAGAGGAAGAAGGCTCTGAGTTTTTCTCGCATTGT 576
||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| || |
Sbjct 480 ACAGTACCCGCCGAAAGGGTGGTAGAAGAGGAAGAAGGCTCTGAGTTTT-C-CGCCTTAT 537
Query 577 GGGAT--GT-TTTCTATTTAGCTCCATGTGTTTCATTTTGTCTGAACCATTTT-TGTTTG 632
|||| || ||| |||||||||||||||||||||||||||| |||| ||||| | ||||
Sbjct 538 TGGATATGTCTTT-TATTTAGCTCCATGTGTTTCATTTTGTCAGAACAATTTTAT-TTTG 595
Query 633 ---T--GTTAGATTGTTGAAGAGCTTTGGAGTTTAACACTTTTTGTTAATTTAA 681
| |||||||||| |||||| ||||||||| || |||||||||||||||||
Sbjct 596 GAGTTTGTTAGATTGTGGAAGAGTTTTGGAGTTGAATACTTTTTGTTAATTTAA 649
> Ahg938148 jgi|Araly1|938148|scaffold_502339.1
Length=490
Score = 549 bits (297), Expect = 1e-155
Identities = 412/467 (88%), Gaps = 10/467 (2%)
Strand=Plus/Plus
Query 104 AACCATGTCAAAGAGAAAGACTAAAGAGCCAAAGGTCGATGTTGTGACTCTTGGACCATC 163
||||||||| ||||||||||| |||||||||||||| || | | ||||||||||| |
Sbjct 17 AACCATGTCGAAGAGAAAGACAAAAGAGCCAAAGGTTGA-GACAT--CTCTTGGACCAAC 73
Query 164 TGTTCGTGAGGGAGAGCAA-GT-TTTCGGTGTTGTCCACATCTTTGCTTCATTCAACGAC 221
||||||||| |||||| || || ||| || ||||| ||||||||||||||||||||||||
Sbjct 74 TGTTCGTGAAGGAGAG-AACGTCTTT-GGAGTTGTTCACATCTTTGCTTCATTCAACGAC 131
Query 222 ACTTTCATTCATGTTACTGATTTGTCTGGTCGTGAAACTCTTGTCCGTATCACCGGTGGA 281
||||||||||| || |||||| ||||||| || ||||| ||||| || ||||| ||||||
Sbjct 132 ACTTTCATTCACGTGACTGATCTGTCTGGACGGGAAACACTTGTTCGCATCACTGGTGGA 191
Query 282 ATGAAGGTGAAAGCTGATAGAGATGAGTCCTCACCTTACGCAGCTATGCTTGCAGCACAG 341
|||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||
Sbjct 192 ATGAAGGTGAAAGCCGACAGAGATGAGTCCTCACCTTATGCAGCTATGCTTGCTGCACAA 251
Query 342 GATGTTGCTCAGCGATGCAAGGAACTTGGTA-TCACTGCCATGCATGTGAAGCTCCGTGC 400
||||| ||||||||||||||||||||||| | ||||||| || ||||||| |||||||||
Sbjct 252 GATGTCGCTCAGCGATGCAAGGAACTTGG-AGTCACTGCGATACATGTGATGCTCCGTGC 310
Query 401 CACAGGTGGAAACAAGACCAAGACACCTGGTCCTGGAGCACAGTCTGCCCTTAGAGCCCT 460
||| |||||||||||||| ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 311 CACTGGTGGAAACAAGACAAAGACCCCTGGACCTGGTGCTCAGTCTGCCCTAAGAGCCCT 370
Query 461 TGCTCGTTCCGGCATGAAAATAGGCCGTATTGAGGATGTTACTCCCATCCCAACAGACAG 520
||||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||| |||||
Sbjct 371 TGCTCGTTCTGGCATGAAAATTGGCCGCATTGAGGATGTGACTCCAATCCCAACCGACAG 430
Query 521 TACCCGCAGAAAGGGTGGTAGAAGAGGAAGAAGGCTCTGAGTT-TTT 566
||||||||||||| |||| ||||||||||| ||||| |||||| |||
Sbjct 431 TACCCGCAGAAAGAGTGGAAGAAGAGGAAGGAGGCTGTGAGTTATTT 477
> Ahg325233 jgi|Araly1|325233|fgenesh1_pm.C_scaffold_6000453
Length=375
Score = 279 bits (151), Expect = 1e-74
Identities = 252/298 (85%), Gaps = 18/298 (6%)
Strand=Plus/Plus
Query 146 TGTGACTCTTGGACCATCTGTTCGTGAGGGAGAGCAAGTTTTCGGTGTTGTCCACATCTT 205
||| ||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||
Sbjct 2 TGTCACTCTTGGACCATCTGTTCTTGAGGGAGAGCAAGTTTTTGGTGTTGTTCACATCTT 61
Query 206 TGCTTCATTCAACGACACTTTCA----TTCATGTTACTGATTTGTCTGGTC-GTGAAACT 260
||| |||||||| |||||||||| |||| || |||||| ||||||| | | ||||||
Sbjct 62 TGCATCATTCAATGACACTTTCATTTCTTCACGTGACTGATCTGTCTGG-CAGAGAAACT 120
Query 261 CTTGTCCGTATCACCGGTGGAATGAAGGTGAAA-GCTGATAGAGATGAGTCCTCACCTTA 319
|| || ||||||| | | | | || ||| |||||| | |||||||| || |||||
Sbjct 121 CTCGTTCGTATCA-C--T-G--T---TGT-AAAGGCTGATCGTGATGAGTCTTCTCCTTA 170
Query 320 CGCAGCTATGCTTGCAGCACAGGATGTTGCTCAGCGATGCAAGGAACTTGGTATCACTGC 379
|| |||||||||||||| || ||||||||||| |||||||||| ||||| ||||||||
Sbjct 171 TGCTGCTATGCTTGCAGCTCAAGATGTTGCTCAAAGATGCAAGGAGCTTGGCATCACTGC 230
Query 380 CATGCATGTGAAGCTCCGTGCCACAGGTGGAAACAAGACCAAGACACCT-GGTCCTGG 436
|||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 231 CATGCATGTGAAGCTCCGTGCCACCGGTGGAAACAAGACCAAGACTCCCAGGTCCTGG 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27791606493
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5