BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36180.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934242 jgi|Araly1|934242|scaffold_402230.1 558 9e-159
Ahg941256 jgi|Araly1|941256|scaffold_601800.1 416 6e-116
> Ahg934242 jgi|Araly1|934242|scaffold_402230.1
Length=481
Score = 558 bits (302), Expect = 9e-159
Identities = 390/432 (90%), Gaps = 7/432 (2%)
Strand=Plus/Plus
Query 1 ATGGCAGAGATTTTCGAAAGTGTTGACAAAAACAAAGATGGAAAAATTTTATGGGACGAA 60
||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||
Sbjct 30 ATGGCAGAGATTTTCGAGAGAGTTGACAAAAACAAAGATGGAAAAATTTCATGGGACGAA 89
Query 61 TTCGCAGAGGCGATTCGCGTTTTTTCTCCTCAAA-TAACATCAGAAGAAATTGATAAGAT 119
|| || ||||||||||||||||||||||| |||| ||||| | ||||| |||||||||||
Sbjct 90 TTTGCGGAGGCGATTCGCGTTTTTTCTCC-CAAAATAACAGCTGAAGAGATTGATAAGAT 148
Query 120 GTTTATAGTTCTTGATGTCGATGGTGATGGTCAAATTGATG-ATGTGGAGTTTGCTTCGT 178
||| ||||||||||||||||||||||| |||||||| |||| | |||||||||||||||
Sbjct 149 GTTCATAGTTCTTGATGTCGATGGTGACGGTCAAATAGATGCAA-TGGAGTTTGCTTCGT 207
Query 179 GTTTGATGGTCAATGGTGGAGGAGAAAAAGATACCGAAGAAGAAGTTGTTATGAAAGAAG 238
|||||||||| || || ||||||||||||||| || ||||||||||||||||||||||
Sbjct 208 GTTTGATGGTTAACGGCGGAGGAGAAAAAGAT---GATGAAGAAGTTGTTATGAAAGAAG 264
Query 239 CTTTCGATTTGTATGATATGGATGGTGATGGAAAGATCTCAGCGAGTGAGATTCATGTGG 298
|||| |||||||| ||||| ||||||||||| ||||| || |||||||||||||||||||
Sbjct 265 CTTTTGATTTGTACGATATCGATGGTGATGGGAAGATTTCGGCGAGTGAGATTCATGTGG 324
Query 299 TATTGAAACGACTTGGAGAGAAGCATACAATGGAAGATTGTGTTGTGATGGTTCAAACCG 358
||||||| |||||||||||||| ||||||||||| || |||||| |||||||||| |||
Sbjct 325 TATTGAAGCGACTTGGAGAGAAACATACAATGGAGGAATGTGTTACGATGGTTCAAGCCG 384
Query 359 TTGATAAAGACAGTGATGGTTTTGTTAATTTTGAAGAGTTTAAGATTATGATGAACTCTA 418
||||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||
Sbjct 385 TTGATAAAGACGGTGATGGTTTTGTTAGCTTCGAAGAGTTTAAGGTTATGATGAACTCTA 444
Query 419 ACAAAGAGTCAC 430
| ||||||||||
Sbjct 445 AGAAAGAGTCAC 456
> Ahg941256 jgi|Araly1|941256|scaffold_601800.1
Length=483
Score = 416 bits (225), Expect = 6e-116
Identities = 356/420 (85%), Gaps = 5/420 (1%)
Strand=Plus/Plus
Query 4 GCAGAGATTTTCGAAAGTGTTGACAAAAACAAAGATGGAAAAATTTTATGGGACGAATTC 63
||||| || ||||| || |||||||||||||||||||||||||| | |||||| |||||
Sbjct 30 GCAGAAATCTTCGAGAGAGTTGACAAAAACAAAGATGGAAAAATCTCATGGGATGAATTT 89
Query 64 GCAGAGGCGATTCGCGTTTTTTCTCCTCAAATAACATCAGAAGAAATTGATAAGATGTTT 123
|| || |||||||||| |||||||||| ||||||||| |||||| ||||| |||||||
Sbjct 90 GCCGAAGCGATTCGCGCTTTTTCTCCTTTAATAACATCTGAAGAACTTGATCAGATGTTC 149
Query 124 ATAGTTCTTGATGTCGATGGTGATGGTCAAATTGATGATGTGGAGTTTGCTTCGTGTTTG 183
| || ||||| ||||| |||||| ||||| |||| || ||| ||||||||||| |||
Sbjct 150 AGAGAGCTTGACGTCGACGGTGATAACCAAATCGATGCTGCGGAATTTGCTTCGTGCTTG 209
Query 184 ATGGTCAATGGTGGAGGAGAAAAAGATACCGAAGAAGA-AGTTGTTATGAAAGAAGCTTT 242
||| | |||| ||||| ||||| | ||| ||||| | ||||||||||||||||||
Sbjct 210 ATGCTTGGCGGTGAAGGAGGAAAAG--A-CGATGAAGACA-CTGTTATGAAAGAAGCTTT 265
Query 243 CGATTTGTATGATATGGATGGTGATGGAAAGATCTCAGCGAGTGAGATTCATGTGGTATT 302
|||||||||||||| |||||||| |||||||| || |||||||||||||||||||||||
Sbjct 266 TGATTTGTATGATATTGATGGTGACGGAAAGATATCCGCGAGTGAGATTCATGTGGTATT 325
Query 303 GAAACGACTTGGAGAGAAGCATACAATGGAAGATTGTGTTGTGATGGTTCAAACCGTTGA 362
|||||| ||||||||||||||||||||| |||| || ||||||||||||| | |||||||
Sbjct 326 GAAACGTCTTGGAGAGAAGCATACAATGCAAGAATGCGTTGTGATGGTTCGAGCCGTTGA 385
Query 363 TAAAGACAGTGATGGTTTTGTTAATTTTGAAGAGTTTAAGATTATGATGAACTCTAACAA 422
| ||| ||||||| ||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 386 TGCAGATGGTGATGGCTTTGTGAGTTTTGAAGAGTTTAAGATTATGATGAGTTCTAACAA 445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15681947079
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5