BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36200.2
Length=3457
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482593 jgi|Araly1|482593|fgenesh2_kg.4__1653__AT2G36200.1 2904 0.0
Ahg952295 jgi|Araly1|952295|scaffold_5300007.1 518 1e-145
Ahg901560 jgi|Araly1|901560|Al_scaffold_0004_2210 429 6e-119
Ahg952294 jgi|Araly1|952294|scaffold_5300006.1 259 9e-68
Ahg934084 jgi|Araly1|934084|scaffold_402072.1 65.8 2e-09
> Ahg482593 jgi|Araly1|482593|fgenesh2_kg.4__1653__AT2G36200.1
Length=3182
Score = 2904 bits (1572), Expect = 0.0
Identities = 1676/1728 (97%), Gaps = 0/1728 (0%)
Strand=Plus/Plus
Query 1512 CAACTTGAGGAGTTGCAAGATAAGTATGTCGGTCAAGTGCGGGAGTGCTCTGATCTGACT 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CAACTTGAGGAGTTGCAAGATAAGTATGTCGGTCAAGTGCGGGAGTGCTCTGATCTGACT 1378
Query 1572 ACCAAGCTTGATATCACCGAGAAAAACTTGAGCCAAACATGCAAAGTGCTTGCTTCCACA 1631
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AGCAAGCTTGATATCACCGAGAAAAACTTGAGCCAAACATGCAAAGTGCTTGCTTCCACA 1438
Query 1632 AACGAGGAATTGAAGAAATCTCAATATGCCATGAAAGAGAAAGATTTCATCATTTCAGAG 1691
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1439 AACGAGGAATTGAAGAAATCTCAATATGCCATGAAGGAGAAAGATTTCATCATTTCAGAG 1498
Query 1692 CAGAAAAAATCTGAAAATGTACTGGTTCAACAAGCTTGCATTTTGCAATCCAACCTAGAG 1751
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CAGAAAAAATCTGAAAACGTACTGGTTCAACAAGCTTGCATTTTGCAATCCAACCTAGAG 1558
Query 1752 AAAGCTACTAAAGACAATTCTTCATTACACCAAAAGATTGGAAGAGAGGACAAGCTTAGT 1811
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1559 AAAGCTACTAAAGACAATTCTTCATTACACCAAAAAATTGGAAGAGAGGACAAGCTCAGT 1618
Query 1812 GCGGATAACAGAAAAGTGGTGGACAATTATCAAGTAGAACTTTCTGAACAAATTTCAAAT 1871
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1619 GCGGATAACAGAAAAGTGGTCGACAATTATCAAGTAGAACTTTCTGAACAAATTTCCAAT 1678
Query 1872 CTGTTCAATAGGGTTGCTTCTTGTCTCTCCCAGCAAAATGTACACCTTCAGGGTGTTAAC 1931
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1679 CTGTTCAATAGGGTTGCTTCTTGTCTGTCCCAGCAAAATGTACACCTTCAGGGAGTTAAC 1738
Query 1932 AAACTGTCCCAATCTCGTTTAGAGGCACACAACAAGGCGATCCTAGAAATGAAAAAGAAG 1991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 AAACTGTCCCAATCTCGTTTAGAGGCACACAACAAGGCGATCCTAGAAATGAAAAAGAAG 1798
Query 1992 GTTAAAGCTTCAAGGGATTTATATAGTTCTCACTTGGAGGCAGTGCAGAATGTAGTTCGG 2051
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1799 GTTAGAGCTTCAAGGGATTTATATAGTTCTCACTTGGAGGAAGTGCAGAATGTAGTTCGG 1858
Query 2052 TTACACAAGGCAAACGCGAATGCTTGTCTTGAGGAAGTTTCAGCATTGACGACTTCAAGT 2111
|| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 TTGCACAAGGCTAACTCGAATGCTTGTCTTGAGGAAGTTTCAGCATTGACGACTTCAAGT 1918
Query 2112 GCATGTTCCATTGATGAATTTCTTGCTTCAGGAGATGAAACAACATCGTCGTTATTTGAT 2171
||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1919 GCAAGTTCCATTGATGAGTTTCTTGCTTCAGGAGATGAGACAACATCGTCTTTATTTGAT 1978
Query 2172 GAACTTCAGAGTGCTCTCTCGTCCCATCAGGGAGAAATGGCTCTCTTTGCGAGGGAACTG 2231
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1979 GAACTTCAGAGTGCTCTCTCGTCTCATCAGGGAGAAATGGCTCTCTTTGCGAGGGAACTG 2038
Query 2232 AGACAAAGGTTCCACACAACGATGGAGCAAACTCAGGAGATGTCTGAATACACAAGTACG 2291
||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 2039 AGACAGAGGTTCCACACAACGATGGAGCAAACTCAGCAAATGTCTGAATACACAAGTACG 2098
Query 2292 TTCTTTCAGAAGCTTATGGAAGAGTCTAAAAATGCTGAGACTCGTGCTGCAGAGGCAAAT 2351
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2099 TTCTTTCAGAAGCTTATGGAAGAGTCTAAAAATGCTGAGAGTCGTGCTGCAGAGGCAAAT 2158
Query 2352 GATAGTCAAATAAACAGCATTATTGATTTTCAGAAGACTTACGAGGCTCAGTCAAAATCT 2411
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2159 AATGGTCAAATAAACAGCATTATTGATTTTCAGAAGACTTACGAGGCTCAGTCAAAATCT 2218
Query 2412 GATACAGATAAACTTATTGCAGATTTAACTAACCTAGTCTCAAGTCACATTCGTCGCCAA 2471
||| ||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 2219 GATGCAGATAAACTTATAGCAGATTTAACTACCCTCGTCTCAAGTCACATTCGTCGCCAA 2278
Query 2472 CACGAATTGGTTGATTCAAGACTCCATAACTTTAAAGATGCCGTCTCTTCCAACAAAACT 2531
|||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 2279 CACGAACTGGTTGATACAAGACTCCATAATTTTAAAGATGCCGTCTCTTCCAACAAAATT 2338
Query 2532 TTCTTGGACGAACATGTCTCTGCTGTTAATAATCTGACGAAAGACGCAAAAAGAAAGTGG 2591
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2339 TTCTTGGACGAACACGTCTCTGCTGTTAATAATCTGACTAAAGACGCAAAAAGAAAGTGG 2398
Query 2592 GAGACATTTTCCATGCAAGCTGAGAATGAAGCCAGAGAAGGTGCTGATTTCTCGGCTGCA 2651
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2399 GAGACCTTTTCCATGCAAGCTGAGAATGAAGCCAGAGAAGGTGCTGATTTCTCGGCTGCC 2458
Query 2652 AAACATTGTCGAATGGAGTTACTGCTTCAGCAATCTGTGGGTCATGCGGAATCAGCTTTC 2711
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2459 AAACATTGTCGAATGGAATTACTGCTTCAGCAATCTGTGGGTCATGCGGAATCAGCTTTC 2518
Query 2712 AAACACTGCAAGATAACTCATGAATCTCTAAAGGAGATGACCAGTAAGCAAGTCACAGAT 2771
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2519 AAACACTGCAAGATAACTCATGAATCTCTAAAGGAGATGAACAGTAAGCAAGTCACAGAT 2578
Query 2772 GTCTCTTCACTTGTTAGGTCTGCTTGTGATAGTAACGAGCAGCACGATGCCGAAGTAGAT 2831
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 2579 GTCTCTTCACTTGTTAGGTCTGCTTGTGATAGTAACGAGCGGCACGATGCGGAAGTAGAT 2638
Query 2832 TCTGCAAGGACTGCTGCTGAAAAAGATGTAACAAAGAACAGCGATGATATAATCCAGCAA 2891
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2639 TCTGCAAGGACTGCGGCTGAAAAAGATGTAACAAAGAACAGCGATGATATAATCCAGCAA 2698
Query 2892 ATTGAACGCATGTCAGAGGATGAAAAAGCGTCTGTATCAAAAATCCTGGAAAATGTCAGG 2951
||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 2699 ATTGACCGCATGTCAGAGGATGAAAAAGCGTCTGTATCACAAATCTTGGAAAATGTCAGG 2758
Query 2952 TCGCATGAAAAAACTCTTGAAAGTTTCCAACAGGATCAGTGTTGCCAAGCCAGATGCATC 3011
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2759 TCGCATGAAAAAACTCTTGAAAGTTTCCAACAGGATCAGTGTTGCCAAGCCAGATGCATT 2818
Query 3012 GAGGATAAAGCTCAAGAAACTTTTCAACAACAATACATGGAGTATGAGCCCACAGGTGCA 3071
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 2819 GAGGATAAAGCTCAAGAAACTTTTCAACAAAAATACATGGAGTATGAGCCCACAGGGGCA 2878
Query 3072 ACTCCAACAAAGAATGAACCAGAGATCCCAACCAAAGCCACCATTGAATCACTACGAGCC 3131
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 2879 ACTCCAACAAAGAATGAACCAGAGATCCCAACTAAAGCCACCATTGAATCACTAAGAGCC 2938
Query 3132 ATGCCAATTGAGACATTAGTTGAAGAGTTCCGTGAAAACAACTCTTATGAATCCTTTGCG 3191
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2939 ATGCCAATTGAGACATTGGTTGAAGAGTTCCGTGAAAACAATTCTTATGAATCCTTTGCG 2998
Query 3192 ACCAAGGAAACAAAACCGCAACAGCTAACACGGTCGCCTCTCTCACAA 3239
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2999 ACCAAGGAAACAAAACCGCAACAGCTAACACGGTCGCCTCTCTCACAA 3046
Score = 2230 bits (1207), Expect = 0.0
Identities = 1284/1321 (97%), Gaps = 6/1321 (0%)
Strand=Plus/Plus
Query 101 TTCGCCGTCCGTTCGCCG-TTTAAAAATGTCTAGCCGCCATGACAAAGAGAAAGGCGTCA 159
|||||||||||||||||| ||| || |||||||||||||| |||||||||||||||||||
Sbjct 1 TTCGCCGTCCGTTCGCCGCTTT-AAGATGTCTAGCCGCCACGACAAAGAGAAAGGCGTCA 59
Query 160 ATGTTCAAGTCCTCCTCCGATGCAGGCCATTTAGCGATGATGAATTGAGAAGCAATGCGC 219
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 60 ATGTTCAAGTCCTCCTTCGATGCAGGCCATTTAGCGATGATGAATTGAGAAGCAATGCTC 119
Query 220 CTCAGGTTCTCACTTGTAATGATTTGCAAAGAGAAGTTGCTGTTTCCCAAAACATCGCTG 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTCAGGTTCTCACTTGTAATGATTTGCAAAGAGAAGTTGCTGTTTCCCAAAACATCGCTG 179
Query 280 GGAAGCATATTGATAGGGTTTTCACTTTTGATAAGGTGTTTGGACCATCAGCACAACAGA 339
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 180 GGAAGCATATTGATAGGGTTTTCACTTTTGATAAGGTGTTTGGACCATCCGCACAACAAA 239
Query 340 AGGATTTGTATGATCAAGCCGTTGTTCCAATTGTGAATGAAGTACTTGAAGGTTTTAATT 399
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 240 AGGATTTGTATGATCAGGCCGTTGTTCCTATTGTGAATGAAGTACTTGAAGGTTTTAACT 299
Query 400 GTACTATATTTGCGTATGGTCAGACTGGTACTGGTAAAACATATACAATGGAAGGAGAAT 459
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 GTACGATATTTGCGTATGGTCAGACTGGTACTGGTAAGACATATACAATGGAAGGAGAAT 359
Query 460 GTAGAAGATCAAAGAGC-GCACCTTGTGGAGGTCTTCCGGCAGAAGCAGGTGTTATACCT 518
||||||| ||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTAGAAGGTCAAAGA-CGGCTCCTTGTGGAGGTCTTCCGGCAGAAGCAGGTGTTATACCT 418
Query 519 AGAGCTGTGAAACAAATATTTGATACGCTTGAGGGTCAGCAAGCTGAGTACAGTGTTAAA 578
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGAGCTGTGAAACAAATCTTTGATACGCTTGAGGGTCAGCAAGCTGAGTACAGTGTTAAG 478
Query 579 GTCACGTTTTTGGAACTCTACAATGAAGAGATTACCGATTTGCTTGCTCCTGAAGATCTA 638
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 479 GTCACGTTTTTGGAACTCTACAATGAAGAGATTACTGATTTGCTTGCTCCTGAAGATATA 538
Query 639 TCCAGAGTTGCTGCTGAAGAAAAACAAAAGAAGCCGTTGCCTCTCATGGAGGACGGCAAA 698
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 539 TCCAGAGTTGCTGCTGAAGATAAACAAAAGAAGCCGTTACCTCTCATGGAGGATGGCAAA 598
Query 699 GGTGGTGTTCTTGTTAGAGGATTGGAAGAGGAAATCGTGACAAGTGCCAATGAAATCTTT 758
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 599 GGTGGTGTTCTTGTTAGAGGATTGGAAGAGGAAATCGTCACAAGTGCCAATGAAATCTTC 658
Query 759 ACTTTGCTTGAGAGAGGTTCCTCTAAACGGA-GAACTGCAGAAACATTCTTGAATAAACA 817
|||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 659 ACTTTGCTTGAGAGAGGTTCCTCTAAAC-GACGGACTGCAGAAACATTCTTGAATAAACA 717
Query 818 ATCAAGTCGGTCACATTCTCTCTTCTCAATAACAATACATATCAAAGAAGCTACTCCAGA 877
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 718 ATCAAGTCGGTCACATTCTCTCTTCTCAATAACCATACATATTAAAGAAGCTACTCCAGA 777
Query 878 AGGTGAAGAACTAATCAAGTGTGGCAAGCTCAACTTGGTTGACTTGGCAGGGTCAGAAAA 937
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 778 AGGTGAAGAACTAATCAAGTGTGGCAAGCTGAACTTGGTTGACTTGGCAGGATCAGAAAA 837
Query 938 TATATCACGTTCTGGTGCTAGGGATGGCCGGGCTCGAGAAGCTGGTGAAATAAACAAAAG 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TATATCACGTTCTGGTGCTAGGGATGGCCGGGCTCGAGAAGCTGGTGAAATAAACAAAAG 897
Query 998 TCTTCTTACATTAGGACGAGTGATCAGCGCTTTGGTTGAACATCTTGGACACGTTCCTTA 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TCTTCTTACATTAGGACGAGTGATCAGCGCTTTGGTTGAACATCTTGGACACGTTCCTTA 957
Query 1058 CAGGGATAGTAAGCTCACCCGTTTACTACGTGATTCACTTGGTGGGAGAACAAAGACATG 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CAGGGATAGTAAGCTCACCCGTTTACTACGTGATTCACTTGGTGGGAGAACAAAGACATG 1017
Query 1118 TATCATAGCCACAGTTTCACCTGCCGTTCATTGTCTGGAGGAAACATTAAGTACTCTTGA 1177
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1018 TATCATAGCCACAGTTTCACCTGCCGTTCATTGTCTGGAGGAAACTTTAAGTACTCTTGA 1077
Query 1178 TTATGCACACAGGGCTAAGAATATTAGAAACAAACCAGAGGTTAACCAGAAAATGATGAA 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTATGCACACAGGGCTAAGAATATTAGAAACAAACCAGAGGTTAACCAGAAAATGATGAA 1137
Query 1238 ATCTACTTTGATAAAGGACCTTTATGGTGAAATAGAACGACTTAAGGCGGAGGTATACGC 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1138 ATCTACTTTGATAAAGGACCTTTATGGTGAAATAGAACGACTTAAGGCGGAGGTATATGC 1197
Query 1298 TTCCCGTGAGAAAAATGGTGTTTATATGCCAAAAGAGAGATACTACCAAGAGGAGAGTGA 1357
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1198 TTCCCGTGAGAAAAATGGTGTTTATATGCCAAAAGAGAGATACTATCAAGAGGAGAGTGA 1257
Query 1358 GAGAAAGGTAATGGCTGAGCAGATTGAACAGATGGGTGGTCAGATAGAGAATTACCAAAA 1417
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GAGAAAGGCAATGGCTGAGCAGATTGAACAGATGGGTGGTCAGATAGAGAATTACCAAAA 1317
Query 1418 A 1418
|
Sbjct 1318 A 1318
> Ahg952295 jgi|Araly1|952295|scaffold_5300007.1
Length=551
Score = 518 bits (280), Expect = 1e-145
Identities = 346/377 (92%), Gaps = 8/377 (2%)
Strand=Plus/Plus
Query 2030 GGCAGTGCAGAATGTAGTTCGGTTACACAAGGCAAAC-GCG-A-ATGCTTGTCTTGAGGA 2086
|||||||||||||||||||||||| |||||||||||| | | | ||||||||||||||||
Sbjct 162 GGCAGTGCAGAATGTAGTTCGGTTGCACAAGGCAAACTG-GAATATGCTTGTCTTGAGGA 220
Query 2087 AGTTTCAGCATTGACGACTTCAAGTGCATGTTCCATTGATGAATTTCTTGCTTCAGGAGA 2146
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 221 AGTTTCAGCATTGACTACTTCAAGTGCATGTTCCATTGATGAGTTTCTTGCTTCAGGAGA 280
Query 2147 TGAAACAACA-TCGTCGTTATTTGATGAACTTCAGAGTGCTCTCTCGTCCCATCAGGGAG 2205
||| |||||| | |||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 281 TGAGACAACAGT-GTCGCTATTTGATGAACTTCAGAGCACTCTCTCGTCCCATCAGGGAG 339
Query 2206 AAATGGCTCTCTTTGCGAGGGAACTGAGACAAAGGTTCCACACAACGATGGAGCAAACTC 2265
|||||| ||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 340 AAATGGTTCTCTTTGCGAGGGAACTGAGGCAGAGGTTCCACACAACGATGGAGCAAACAC 399
Query 2266 AGGAGATGTCTGAATACACAAGTACGTTCTTTCAGAAGCTTATGGAAGAGTCTAAAAATG 2325
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 400 AGGAGATGTTTGAATACACAAGTATGTTCTTTCAGAAGCTTATGGAAGAGTCTAAAAATT 459
Query 2326 CTGAGACTCGTGCTGCAGAGGCAAATGATAGTCAAATAAA-CAGCATTATTGATTTTCAG 2384
|||||| ||||| ||||||||||||| ||||| | ||||| ||| ||| || ||||||||
Sbjct 460 CTGAGAGTCGTGTTGCAGAGGCAAATAATAGTTACATAAAACAGAATTTTTTATTTTCAG 519
Query 2385 AAGACTTACGAGGCTCA 2401
|||||| |||||| |||
Sbjct 520 AAGACTGACGAGG-TCA 535
> Ahg901560 jgi|Araly1|901560|Al_scaffold_0004_2210
Length=936
Score = 429 bits (232), Expect = 6e-119
Identities = 311/346 (90%), Gaps = 18/346 (5%)
Strand=Plus/Plus
Query 2018 TTCTCACTTGGAGGCAGTGCAGAATGTAGTTCGGTTACACAAGGCAAAC-GCGAAT--GC 2074
|||||||||||||||||||||||||||||||||||| |||||||||||| | |||| ||
Sbjct 181 TTCTCACTTGGAGGCAGTGCAGAATGTAGTTCGGTTGCACAAGGCAAACTG-GAATATGC 239
Query 2075 TTGTCTTGAGGAAGTTTCAGCATTGACGACTTCAAGTGCATGTTCCATTGATGAATTTCT 2134
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 240 TTGTCTTGAGGAAGTTTCAGCATTGACTACTTCAAGTGCATGTTCCATTGATGAGTTTCT 299
Query 2135 TGCTTCAGGAGATGAAACAACA-TCGTCGTTATTTGATGAACTTCAGAGTGCTCTCTCGT 2193
||||||||||||||| |||||| | |||| ||||||||||||||||||| |||||||||
Sbjct 300 TGCTTCAGGAGATGAGACAACAGT-GTCGCTATTTGATGAACTTCAGAGCACTCTCTCGT 358
Query 2194 CCCATCAGGGAGAAATGGCTCTCTTTGCGAGGGAACTGAGACAAAGGTTCCACACAACGA 2253
|||||||||||||||||| ||||||||||||||||||||| || |||||||||||||| |
Sbjct 359 CCCATCAGGGAGAAATGGTTCTCTTTGCGAGGGAACTGAGGCAGAGGTTCCACACAAC-A 417
Query 2254 TGGAGCAAACTCAGGAGATGTCTGAATACACAAGTACGTTCTTTCAGAAGCTTATGGAAG 2313
|| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 418 -----CA------GGAGATGTTTGAATACACAAGTATGTTCTTTCAGAAGCTTATGGAAG 466
Query 2314 AGTCTAAAAATGCTGAGACTCGTGCTGCAGAGGCAAATGATAGTCA 2359
||||||||||| |||||| ||||| ||||||||||||| ||| |||
Sbjct 467 AGTCTAAAAATTCTGAGAGTCGTGTTGCAGAGGCAAATAATACTCA 512
Score = 217 bits (117), Expect = 5e-55
Identities = 155/173 (90%), Gaps = 4/173 (2%)
Strand=Plus/Plus
Query 2487 TCAAGACTCCATAACTTT-AAAGATGCCGTCTCTTCCAACAAAACTT-TCTTGGACGAAC 2544
|||| ||| ||| | ||| ||||||||||||||||||||||||| || ||||| ||||||
Sbjct 562 TCAA-ACTTCATGA-TTTCAAAGATGCCGTCTCTTCCAACAAAAATTGTCTTGCACGAAC 619
Query 2545 ATGTCTCTGCTGTTAATAATCTGACGAAAGACGCAAAAAGAAAGTGGGAGACATTTTCCA 2604
||||||||||||||||||||||||| || || ||||||| |||| |||||||||| ||||
Sbjct 620 ATGTCTCTGCTGTTAATAATCTGACTAATGATGCAAAAATAAAGCGGGAGACATTCTCCA 679
Query 2605 TGCAAGCTGAGAATGAAGCCAGAGAAGGTGCTGATTTCTCGGCTGCAAAACAT 2657
| ||||||||| |||||||||||||||||||||| ||||| ||||||||||||
Sbjct 680 TACAAGCTGAGGATGAAGCCAGAGAAGGTGCTGACTTCTCAGCTGCAAAACAT 732
Score = 100 bits (54), Expect = 6e-20
Identities = 56/57 (98%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 2398 CTCAGTCAAAATCTGATACAGATAAACTTATTGCAGATTTAACTAACCTAGTCTCAA 2454
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 509 CTCAGTCAAAATCTGATACAGATAAACTTATAGCAGATTTAACTAACCTAGTCTCAA 565
> Ahg952294 jgi|Araly1|952294|scaffold_5300006.1
Length=358
Score = 259 bits (140), Expect = 9e-68
Identities = 176/193 (91%), Gaps = 3/193 (2%)
Strand=Plus/Plus
Query 2467 GCCAACACGAATTGGTTGATTCAAGACTCCATAACTTT-AAAGATGCCGTCTCTTCCAAC 2525
|||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||
Sbjct 24 GCCAACACGAATTGGTTGATTCAAGACTTCATGA-TTTCAAAGATGCCGTCTCTTCCAAC 82
Query 2526 AAAACTT-TCTTGGACGAACATGTCTCTGCTGTTAATAATCTGACGAAAGACGCAAAAAG 2584
|||| || ||||| ||||||||||||||||||||||||||||||| || || |||||||
Sbjct 83 AAAAATTGTCTTGCACGAACATGTCTCTGCTGTTAATAATCTGACTAATGATGCAAAAAT 142
Query 2585 AAAGTGGGAGACATTTTCCATGCAAGCTGAGAATGAAGCCAGAGAAGGTGCTGATTTCTC 2644
|||| |||||||||| ||||| ||||||||| |||||||||||||||||||||| |||||
Sbjct 143 AAAGCGGGAGACATTCTCCATACAAGCTGAGGATGAAGCCAGAGAAGGTGCTGACTTCTC 202
Query 2645 GGCTGCAAAACAT 2657
||||||||||||
Sbjct 203 AGCTGCAAAACAT 215
> Ahg934084 jgi|Araly1|934084|scaffold_402072.1
Length=368
Score = 65.8 bits (35), Expect = 2e-09
Identities = 42/45 (93%), Gaps = 2/45 (4%)
Strand=Plus/Plus
Query 141 GACAAAGAGAAAGGCGTCAATGTTCAAGTCCT-CCTCCGATGCAG 184
|||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 6 GACAAAGAGAAAGGCGTCAATGTTCAAGTC-TACCTTCGATGCAG 49
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130537475390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5