BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36210.1 Length=765 Score E Sequences producing significant alignments: (Bits) Value Ahg934245 jgi|Araly1|934245|scaffold_402233.1 651 0.0 > Ahg934245 jgi|Araly1|934245|scaffold_402233.1 Length=447 Score = 651 bits (352), Expect = 0.0 Identities = 413/442 (93%), Gaps = 5/442 (1%) Strand=Plus/Plus Query 59 TTAAAGAAGAAAAATGCTAGGAAAAAGAATAGCTTCCTTCAAGAACTTAGCAAAGAAAAT 118 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 10 TTAAAGAAGAAAAATGCTAGGAAAAAGAATAGCTTCCTTCAAGAACTTAGCCAAGAAAAT 69 Query 119 GAAGAGCATCAACACGACGACGAGAAGCGGAGGAGAAGGCGGCTCGGAGTCAACTTATAA 178 ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 70 GAAGAGCATCAACACGACGACGAGAAGCGGAGGAGAAGGCGGCTCCCAGTCAACATATAA 129 Query 179 CGAGTCTCTTCTGATGAATGAGGCGGACGAGGCGGCGATGATGGCGTCAAAGACGCCGAC 238 ||||||||||||||||||||||||||| ||| |||||||| | | ||||||||||||| Sbjct 130 CGAGTCTCTTCTGATGAATGAGGCGGAGGAGACGGCGATG--GA-GACAAAGACGCCGAC 186 Query 239 GGGGACGTTTGCGGTGTACGTAGGGGAAGAGCGCGTGAAGCGCGTGGTACCAACAAGCTA 298 ||||| || || ||||||||||| ||||||||||||| ||||||||| || |||||||| Sbjct 187 CGGGACCTTCGCAGTGTACGTAGGAGAAGAGCGCGTGAGGCGCGTGGTTCCGACAAGCTA 246 Query 299 CTTGAATCATCCTCTCTT-CAGGATGCTCCTCGACAAGTCTCACGACGAGTTTCTCTGTT 357 |||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||||| Sbjct 247 CTTGAATCATCCTCTCTTTC-GGATGCTCCTTAACAAGTCTCACGACGAGTTCCTCTGTT 305 Query 358 TCGAGCAGAAGGTTATGTTGGTGGTCCCTTGCAGCCTCTCCGTTTTCCAAGACGTTGTTA 417 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 306 TCGAGCAGAAGGTTATGTTGGTCGTCCCTTGCAGCCTCTCCGTTTTCCAAGACGTTGTAA 365 Query 418 ACGCCGTCGAGTCTTGTAATGGCAACTTCGATTTCGGCGAGTTTGTCGAGGAGTTTCTAT 477 ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 366 ACGCCATCGAGTCTTGTAACGGCAACTTCGATTTCGGCGAGTTTGTCGAGGAGTTTCTAT 425 Query 478 AAATTTAATTCCGACTTCTTCT 499 |||||||||| ||||||||||| Sbjct 426 AAATTTAATTTCGACTTCTTCT 447 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28210958580 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5