BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G36210.1

Length=765
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg934245 jgi|Araly1|934245|scaffold_402233.1                        651    0.0  


> Ahg934245 jgi|Araly1|934245|scaffold_402233.1
Length=447

 Score =  651 bits (352),  Expect = 0.0
 Identities = 413/442 (93%), Gaps = 5/442 (1%)
 Strand=Plus/Plus

Query  59   TTAAAGAAGAAAAATGCTAGGAAAAAGAATAGCTTCCTTCAAGAACTTAGCAAAGAAAAT  118
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  10   TTAAAGAAGAAAAATGCTAGGAAAAAGAATAGCTTCCTTCAAGAACTTAGCCAAGAAAAT  69

Query  119  GAAGAGCATCAACACGACGACGAGAAGCGGAGGAGAAGGCGGCTCGGAGTCAACTTATAA  178
            |||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||
Sbjct  70   GAAGAGCATCAACACGACGACGAGAAGCGGAGGAGAAGGCGGCTCCCAGTCAACATATAA  129

Query  179  CGAGTCTCTTCTGATGAATGAGGCGGACGAGGCGGCGATGATGGCGTCAAAGACGCCGAC  238
            ||||||||||||||||||||||||||| ||| ||||||||  |  | |||||||||||||
Sbjct  130  CGAGTCTCTTCTGATGAATGAGGCGGAGGAGACGGCGATG--GA-GACAAAGACGCCGAC  186

Query  239  GGGGACGTTTGCGGTGTACGTAGGGGAAGAGCGCGTGAAGCGCGTGGTACCAACAAGCTA  298
             ||||| || || ||||||||||| ||||||||||||| ||||||||| || ||||||||
Sbjct  187  CGGGACCTTCGCAGTGTACGTAGGAGAAGAGCGCGTGAGGCGCGTGGTTCCGACAAGCTA  246

Query  299  CTTGAATCATCCTCTCTT-CAGGATGCTCCTCGACAAGTCTCACGACGAGTTTCTCTGTT  357
            |||||||||||||||||| | ||||||||||  ||||||||||||||||||| |||||||
Sbjct  247  CTTGAATCATCCTCTCTTTC-GGATGCTCCTTAACAAGTCTCACGACGAGTTCCTCTGTT  305

Query  358  TCGAGCAGAAGGTTATGTTGGTGGTCCCTTGCAGCCTCTCCGTTTTCCAAGACGTTGTTA  417
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct  306  TCGAGCAGAAGGTTATGTTGGTCGTCCCTTGCAGCCTCTCCGTTTTCCAAGACGTTGTAA  365

Query  418  ACGCCGTCGAGTCTTGTAATGGCAACTTCGATTTCGGCGAGTTTGTCGAGGAGTTTCTAT  477
            ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  366  ACGCCATCGAGTCTTGTAACGGCAACTTCGATTTCGGCGAGTTTGTCGAGGAGTTTCTAT  425

Query  478  AAATTTAATTCCGACTTCTTCT  499
            |||||||||| |||||||||||
Sbjct  426  AAATTTAATTTCGACTTCTTCT  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28210958580


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5