BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36230.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934247 jgi|Araly1|934247|scaffold_402235.1 1469 0.0
> Ahg934247 jgi|Araly1|934247|scaffold_402235.1
Length=960
Score = 1469 bits (795), Expect = 0.0
Identities = 906/959 (94%), Gaps = 10/959 (1%)
Strand=Plus/Plus
Query 12 ACAGTTTCAGTTCCAAAGATGAGAACTTTGAGCTCCCAATTA---TACTCCAATGGTGGT 68
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 4 ACAGTTCCAGTTCCAAAGATGAGAACTTTGAGCTCCCAATTATTGTACTCCAATGGTGGT 63
Query 69 CTCACTTGGTTCCAGAAGAAGAATCAGAGCTCTCTG-TTCATCAAGCATCTCAGAGTCTC 127
||| ||||||||||||||||||| || ||||||||| || ||| | ||||||||| ||||
Sbjct 64 CTCGCTTGGTTCCAGAAGAAGAACCAAAGCTCTCTGTTTAATC-ATCATCTCAGAATCTC 122
Query 128 TAAACCATCGAGGGTTCAGCTCATATCTGCTGTTCAATTCCGTCCGTGCATCGATATTCA 187
|||||||||||| ||||||||||||||||||||||||||| | || |||||||| |||||
Sbjct 123 TAAACCATCGAGAGTTCAGCTCATATCTGCTGTTCAATTCAGACCTTGCATCGACATTCA 182
Query 188 TAAGGGAAAAGTGAAACAGATAGTTGGATCCACACTTC-GTGACTTGAAAGAGGATGGTT 246
||||||||||||||||| |||||||||||||||| || |||||||||||||||| ||||
Sbjct 183 CAAGGGAAAAGTGAAACAAATAGTTGGATCCACAC-TCAGTGACTTGAAAGAGGAAGGTT 241
Query 247 CAGTTCTCGTTACGAATTTTGAATCGGATAAGTCTGCGGAAGAGTATGCAAAGATGTACA 306
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CAGTTCTTGTAACGAATTTTGAATCGGATAAGTCTGCGGAAGAGTATGCAAAGATGTACA 301
Query 307 AAGAAGATGGGCTTACGGGTGGTCATGTGATAATGCTTGGAGCAGACCCTTTAAGCCAAG 366
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 302 AAGAAGATGGTCTTACGGGTGGTCATGTCATAATGCTTGGAGCAGACCCTTTAAGCCAAG 361
Query 367 CTGCAGCTATTGGAGCATTACATGCTTATCCTGGCGGTTTGCAAGTTGGAGGTGGAATCA 426
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 362 CTGCTGCTATTGGAGCATTACATGCTTATCCAGGCGGTTTGCAAGTTGGAGGTGGAATCA 421
Query 427 ATTCTGAGAATTGCATGAGTTATATTGAGGAGGGAGCAAGCCATGTCATTGTCACTTCGT 486
|||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 422 ATTCTGAGAATTGCTTGAGTTATATTGAGGAAGGAGCAAGCCACGTCATTGTCACTTCGT 481
Query 487 ATGTATTTAACAATGGAAAGATTGATCTTGAAAGACTCAAAGATATTGTGAGCATTGTTG 546
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 482 ATGTGTTTAACAATGGAAAGATTGATCTTGAAAGACTCAAAGATCTTGTGAGCATTGTTG 541
Query 547 GGAAACAAAGACTGATATTGGACCTTAGCTGCAGAAAGAAGGATGGAAGATACGCAATTG 606
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 542 GGAAACAAAGACTGATATTGGACCTTAGCTGCAGAAAGAAGGATGGAAGATATGCAATTG 601
Query 607 TTACTGATAGATGGCAGAAGTTCAGCGACGTCATCCTTGACGAGAAATCATTGGAGTTTC 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TTACTGATAGATGGCAGAAGTTCAGCGACGTCATCCTTGACGAGAAATCATTGGAGTTTC 661
Query 667 TTGGAGGATTTTCAGATGAGTTTCTGGTGCATGGCGTAGACGTTGAAGGAAAGAAGCTAG 726
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TTGGAGGATTTGCAGATGAGTTTCTGGTGCATGGCGTAGACGTTGAAGGAAAGAAGCTAG 721
Query 727 GGATCGATGAAGAGCTTGTAGCATTGCTTGGCAACTACTCTCCGATTCCAGTAACTTATG 786
||||||| ||||||||||| ||||||||||||||||| |||| |||||| ||||||||||
Sbjct 722 GGATCGACGAAGAGCTTGTGGCATTGCTTGGCAACTATTCTCAGATTCCGGTAACTTATG 781
Query 787 CGGGAGGTGTGACGGTAATGGATGATGTAGAGAGGATC-AAGGACGCAGGAAAGGGACGT 845
| |||||||||||||| ||||||||||||||||||||| || | |||||||||||||||
Sbjct 782 CTGGAGGTGTGACGGTGATGGATGATGTAGAGAGGATCGAAAAA-GCAGGAAAGGGACGT 840
Query 846 GTAGATGTAACAGTGGGAAGTGCCTTAGACATTTTCGGGGGAAATCTTCCATACAAAGAC 905
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 GTGGATGTAACAGTGGGAAGTGCCTTAGACATTTTCGGGGGAAATCTTCCGTACAAAGAC 900
Query 906 GTCGTCGCTTGGCATCACAAGCAGCACTCACTCCATTGATATCGCCATTTTCACCTTTG 964
|| |||||||||||||||||||||| ||||||||| | |||||||||||||||| ||||
Sbjct 901 GTTGTCGCTTGGCATCACAAGCAGCTCTCACTCCAGTAATATCGCCATTTTCAC-TTTG 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5