BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36240.1
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934248 jgi|Araly1|934248|scaffold_402236.1 2392 0.0
Ahg497209 jgi|Araly1|497209|fgenesh2_kg.53__1__AT2G36240.1 372 5e-102
> Ahg934248 jgi|Araly1|934248|scaffold_402236.1
Length=1537
Score = 2392 bits (1295), Expect = 0.0
Identities = 1443/1515 (95%), Gaps = 8/1515 (1%)
Strand=Plus/Plus
Query 1 ACAGAGAGTGATGCGATGGAACAAGAAGAACGTTATCAGTCTCGTCTCAAAGTCTC-ATC 59
|||||||||||||||||||||||||||||| ||||||| |||||| || ||||| | |||
Sbjct 14 ACAGAGAGTGATGCGATGGAACAAGAAGAATGTTATCAATCTCGTTTCCAAGTC-CAATC 72
Query 60 ATCTTCCGGCGCCGATTACGCCACCGTTACCTGAGATTTACCGAATACCTAATCCTCCAC 119
|||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 73 ATCTCCCGGCGCCGATTACGCCACCGTCACCGGAGATTTACCGAATACCTAATCCTCCAC 132
Query 120 CAAAGCTTCCGGAGATCTCAATTCCTCCGACACTTACGCTCTCTCCATCTCCCAAACACT 179
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 133 CAAAGCTTCCGGAGATCTCAATTCCTCCGACTCTAACTCTCTCTCCATCTCCCAAACACT 192
Query 180 CCAATTTCGTCAATTTCCTCGAGAACAATCTCCCTCACCATCAAACACTAACGCCACAAA 239
|||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 193 CCAATTTCGTCAATTTTCTCGAGAACAACCTCCCTCACCATCAAACCCTAACTCCACAAA 252
Query 240 CTCTTCTTGGATTCCTCCGTTCCAAGATCCGTAACCATCCGCTCTACGCTCATTATGACT 299
||| || |||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 253 ATCTCCTCGGATTCCTCCGTTCCAAGCCCCGTCATCATCCGCTCTACGCTCATTATGACT 312
Query 300 TCGCCGTCTTTAATTGGGCAGCTACACTCGACACTTTCCGTCATGATCACGATTCTTTCC 359
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 313 TCGCCGTCTTCAATTGGGCAGCTACGCTCGACACTTTCCGTCATGATCACGATTCTTTCC 372
Query 360 TCTGGATGTCGAGATCACTCGCCGCCACGCACCGGTTTGACGATCTTTATCGTCTTCTCT 419
|||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||
Sbjct 373 TCTGGATGTCGAGATCACTCGCTGCCACGCACCGGTTTCACGATCTATATCGTCTCCTCT 432
Query 420 CTTTTGTAGCTGCGAATCCATGTCCTTGTTCCTCAGGTATATTCTCTTGTCCAGAGCTTG 479
|||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 433 CTTTCGTAGCGGCGAATCCATGTCCTTGTTCTTCAGGTATCTTCTCTTGTCCAGAGCTTG 492
Query 480 AACCTATTTTCCGATCCGCCATTGATGCGTATTGTAGAGCTAGGAAAATGGATTATGCTT 539
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 493 AACCTATTTTCCGATCCGCCATTGATGCGTATTGTAGAGCTGGGAAAATGGATTATTCGT 552
Query 540 TGTTAGCGTTTGATACTATGAAGAGATTGATCGATGGTAAACCAAATGTTGGAGTTTATA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 TGTTAGCGTTTGATACTATGAAGAGATTGATCGATGGTAAACCAAATGTTGGAGTTTATA 612
Query 600 ACACTGTTGTGAATGGATATGTGAAATCTGGAGATATGGATAAGGCTTTAAGGTTTTACC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 ACACTGTTGTGAATGGATATGTGAAATCTGGAGATATGGATAAGGCTTTAAGGTTTTACC 672
Query 660 AGAGGATGGGAAAGGAAAGAGCAAAGCCAGATGTATGCACGTTTAACATTCTCATCAATG 719
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 673 AGAGGATGGGAAAGGAAAGAGCAAAGCCAGATGTATGCACGTTTAACACCCTCATCAATG 732
Query 720 GTTATTGTAGAAGCTCTAAGTTTGATTTGGCATTGGATTTGTTCAGGGAGATGAAGGAGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GTTATTGTAGAAGCTCTAAGTTTGATTTGGCATTGGATTTGTTCAGGGAGATGAAGGAGA 792
Query 780 AAGGTTGTGAACCGAATGTGGTTAGCTTCAACACTCTTATTAGAGGGTTTTTGAGCAGTG 839
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 793 AAGGTTGTGAACCGAATGTGGTTAGCTTCAACACTCTGATTAGAGGGTTTTTGAGCAGGG 852
Query 840 GTAAAATCGAGGAAGGTGTTAAAATGGCTTATGAGATGATTGAGCTAGGTTGTAGATTCT 899
||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||
Sbjct 853 GTAAAATCGAGGAAGGTATCAAAATGGCTTATGAGATGATTGAGATAGGTTGTAGATTCT 912
Query 900 CAGAAGCTACTTGTGAGATTCTTGTTGATGGGTTGTGTAGAGAAGGTCGGGTTGACGATG 959
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 913 CAGAAGCTACTTGTGAGATTCTGGTTGATGGGTTGTGTAGAGAAGGTCGGGTTGACGATG 972
Query 960 CTTGTGGATTGGTGCTCGATCTTTTGAACAAG-AGGGTTTTACCTAGTGAGTTT-GATTA 1017
|||||||||||||| ||||||||| ||||| | ||||||||||| |||| |||| |||||
Sbjct 973 CTTGTGGATTGGTGATCGATCTTTCGAACA-GTAGGGTTTTACCGAGTG-GTTTTGATTA 1030
Query 1018 TGGTAGTTTGGTTGAGAAACTCTGCGGAGAAAACAAGGCGGTTAGAGCAATGGAGATGAT 1077
||||||||| ||| |||||||||| ||||||||||||| || |||||||||||||||| |
Sbjct 1031 TGGTAGTTTAGTTAAGAAACTCTGTGGAGAAAACAAGGGGGATAGAGCAATGGAGATGGT 1090
Query 1078 GGAGGAGCTGTGGAAGAAAGGCCAAACCCCATGTTTCATTGCTTGTACTACACTCGTCGA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1091 GGAGGAGCTGTGGAAGAAAGGCCAAACCCCATGTTTCATTGCTTGTACTACACTCGTAGA 1150
Query 1138 AGGGTTGAGGAAATCAGGAAGAACAGAGAAAGCGTCAGGGTTTATGGA-GAAGATGATGA 1196
||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct 1151 AGGGTTGAGGAAATCAGGAAGAACAGAGAAAGCATCAGGATTTATGGAAGA-GATGATGA 1209
Query 1197 ATGCAGGAATTCTTCCCGATAGTGTGACATTTAACTTGCTTCTTCGGGATCTCTGCAGTT 1256
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 ACGCAGGAATCCTTCCCGATAGTGTGACATTTAACTTGCTTCTTCGGGATCTCTGCAGTT 1269
Query 1257 CTGATCATTCTACTGATGCAAACAGATTGAGACTTTTGGCATCAAGCAAAGGATATGAAC 1316
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 CTGATCGTTCTACTGATGCAAACAGATTGAGACTTTTGGCATCAAGCAAAGGATATGAAC 1329
Query 1317 CCGATGAGACAACGTACCATGTTTTGGTTTCGGGGTTCACGAAAGAAGGGAGAAGAAAGG 1376
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1330 CCGATGAGACAACGTACCATGTTTTGGTTTCGGGATTCACAAAAGAAGGGAGAAGAAAGG 1389
Query 1377 AAGGAGAAGTTCTAGTGAACGAGATGTTGGATAAAGATATGTTGCCTGATATCTTTACAT 1436
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1390 AAGGAGAAGTTATAGTGAACGAGATGTTGGATAAAGATATGCTGCCTGATATCTTTACAT 1449
Query 1437 ATAATAGATTGATGGATGGCTTGTCCTGCACTGGAAAATTCTCAAGGAAACAAGTCCGGA 1496
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1450 ATAATAGATTGATGGATGGCTTGTCCTGCTCTGGAAAATTCTCAAGGAAGCAAGTCCGGA 1509
Query 1497 TGTTGTAACCTGTGT 1511
||| |||||||||||
Sbjct 1510 TGTCGTAACCTGTGT 1524
> Ahg497209 jgi|Araly1|497209|fgenesh2_kg.53__1__AT2G36240.1
Length=994
Score = 372 bits (201), Expect = 5e-102
Identities = 264/293 (90%), Gaps = 10/293 (3%)
Strand=Plus/Plus
Query 1303 CAAAGGATATGAACCCGATGAGACAACGTACCATG-TTTTGGTTTCGGGGTTCACGAAAG 1361
|||||||| |||| ||||||||||||| ||||||| ||||||||||||| ||||| ||||
Sbjct 710 CAAAGGATTTGAAACCGATGAGACAACATACCATGTTTTTGGTTTCGGGATTCACAAAAG 769
Query 1362 AAGGGAGAAGAAAGGAAGGAGAAGTTCTAGTGAACGAGATGTTGGATAAAGATATGTTGC 1421
||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||
Sbjct 770 AAGGGAGAAGAAAGGAAAGAGAAGTTATAGTGAACGAGATGTGGGATAAAGATATGCTGC 829
Query 1422 CTGATATCTTTACATATAATAGATTGATGGATGGCTTGTCCTGCACTGGAAAATTCT-CA 1480
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||
Sbjct 830 CTGATATCTTTACATATAATAGATTGATGGATAGCTTGTCCTGCATTGGAAAATTCTGCA 889
Query 1481 AGGAAACAAGTCCGGATGTTGTAACCTGTGTTTGATCTGTGTAAACTAGACCCAAGCTAT 1540
||| | ||||||||||| || || || |||||||||||||||||| ||||||||
Sbjct 890 TTGAAGCGAGTCCGGATGT-GT-----GT-TT-GATCTGTGTAAACTAGACACAAGCTAT 941
Query 1541 ATCTATGTATCAACAAATTTTATTTTGAACATATGAAATGGAAACCAAGTTGG 1593
||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 942 ATCTATGTATCAACAGGTTTTATTTTGAAGATATGAAATGGAAACCAAGTTGG 994
Score = 303 bits (164), Expect = 2e-81
Identities = 275/323 (85%), Gaps = 30/323 (9%)
Strand=Plus/Plus
Query 190 CAATTTCCTCGAGAACAATCTCCCTCACCATCAAACACTAACGCCACAAACTCTTCTTGG 249
|||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| || ||
Sbjct 18 CAATTTCCTCGAGAACAATCTCCCTCACCACCAAACCCTAACTCCACAAACTCTCCTCGG 77
Query 250 ATTCCTCCGTTCCAAGATCCGTAACCATCCGCTCTACGCTCATTATGACTTCGCCGTCTT 309
|||||||||||| ||| ||||| |||| ||||||||||||||||||| ||| ||||||||
Sbjct 78 ATTCCTCCGTTCGAAGCTCCGTCACCAGCCGCTCTACGCTCATTATGTCTTGGCCGTCTT 137
Query 310 TAATTGGGCAGCTACACTCGACACTTTCCGTCATGATCACGATTCTTTCCTCTGGATGTC 369
|||||||||||||| | | | | ||||||||||||||||||||||||||||
Sbjct 138 CAATTGGGCAGCTAC----G-C--T--C----ATGATCACGATTCTTTCCTCTGGATGTC 184
Query 370 GAGATCACTCGCCGCCACGCACCGGTTTGACGATCTTTATCGTCTTCTCTCTTTTGTAGC 429
|||| |||||||||||| ||||||||||||||||||||||| | | || ||| |
Sbjct 185 GAGACCACTCGCCGCCAGGCACCGGTTTGACGATCTTTATC-T-T-CT-TCT-------C 233
Query 430 TGCGAATCCATGTCCTTGTTCCTCAGGTATATTCTCTTGTCCAGAGCTTGAACCTATTTT 489
| ||||||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 234 --C----CCATGTCCTTGTTCCTCAGGTATCTTCTCTTGTCCACAGCTCGAACCTATTTT 287
Query 490 CCGATCCGCCATTGATGCGTATT 512
|||||| ||||||||||||||||
Sbjct 288 CCGATCTGCCATTGATGCGTATT 310
Score = 255 bits (138), Expect = 5e-67
Identities = 160/171 (94%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 1047 AAAACAAGGCGGTTAGAGCAATGGAGATGATGGAGGAGCTGTGGAAGAAAGGCCAAACCC 1106
|||||||||||| | ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 536 AAAACAAGGCGGATCGAGAAATGGAGATGGTGGAGGAGCTGTGGAAGAAAGGCCAAACCC 595
Query 1107 CATGTTTCATTGCTTGTACTACACTCGTCGAAGGGTTGAGGAAATCAGGAAGAACAGAGA 1166
||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||
Sbjct 596 CATGTTTCATTGCTTGTACTACACTCGTCCAAGGGTTGAGGAAATCAGAAAGAATAGAGA 655
Query 1167 AAGCGTCAGGGTTTATGGAGAAGATGATGAATGCAGGAATTCTTCCCGATA 1217
|||| ||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct 656 AAGCATCAGGCTTTATGGAGAAGATGATGAATGCAGGAATCCTTCGCGATA 706
Score = 233 bits (126), Expect = 3e-60
Identities = 155/169 (92%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 633 ATATGGATAAGGCTTTAAGGTTTTACCAGAGGAT-GGGAAAGGAAAGAGCAAAGCCAGAT 691
|||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 311 ATATGGATAAGGCTTTAAGGTTTTACCAGAGGATGGGGAAA-GAAAGGGCAAAGCCAGAT 369
Query 692 GTATGCACGTTTAACATTCTCATCAATGGTTATTGTAGAAGCTCTAAGTTTGATTTGGCA 751
|||||||||||||||| ||||||||||| || || || |||| ||||||||||||||||
Sbjct 370 GTATGCACGTTTAACACCCTCATCAATGGCTACTGCAGGAGCTTTAAGTTTGATTTGGCA 429
Query 752 TTGGATTTGTTCAGGGAGATGAAGGAGAAAGGTTGTGAACCGAATGTGG 800
||||||||||||||||||||||||||| |||| |||||||| ||| |||
Sbjct 430 TTGGATTTGTTCAGGGAGATGAAGGAGCAAGGCTGTGAACCAAATCTGG 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60411128570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5