BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36250.1 Length=1948 Score E Sequences producing significant alignments: (Bits) Value Ahg934249 jgi|Araly1|934249|scaffold_402237.1 2420 0.0 Ahg485646 jgi|Araly1|485646|fgenesh2_kg.5__1638__AT3G52750.1 1098 0.0 Ahg901563 jgi|Araly1|901563|Al_scaffold_0004_2213 285 8e-76 Ahg887610 jgi|Araly1|887610|Al_scaffold_0053_4 113 4e-24 > Ahg934249 jgi|Araly1|934249|scaffold_402237.1 Length=1484 Score = 2420 bits (1310), Expect = 0.0 Identities = 1427/1483 (96%), Gaps = 10/1483 (1%) Strand=Plus/Plus Query 198 TCCTGCAGTGATTGGTCTCATTATGGCAACTTACGTTTCACCGTGTTTTACTCCTTCGGA 257 |||||||||| ||||| ||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 2 TCCTGCAGTGGTTGGTTTCAATATGGCAACTTACGTTTCACCGTGTTTCACTCCTTCGGA 61 Query 258 TTCTCGGTTACTAACTGTTCTTAGAAAGAATGTTTTACCGGAGAATCATTTAGGCA-GGT 316 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 62 TTCTCGGTTGCTAACTGTTCTTAGAAAGAATGTATTACCGGAGAATCATTTAGGCAGGGT 121 Query 317 TGAACTCCATTAGAACGATTGACAGTAAGAAAAACCGAGTTGTTG-T--TGCCGCTCAGA 373 | ||||||||||||| |||||| ||||||||||||||||| |||| | ||| ||||||| Sbjct 122 T-AACTCCATTAGAATGATTGAGAGTAAGAAAAACCGAGTAGTTGCTGCTGCTGCTCAGA 180 Query 374 AATCTGAATCTTCTCCAATCAGAAACTCTCCACGGCATTACCAAAGCCAAGCTCAAGATC 433 ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 181 AATCTGAATCTTCGCCAATCAGAAACTCTCCACGGCATTTCCAAAGCCAAGCTCAAGATC 240 Query 434 CTTTCTTGAACCTTCACCCGGAAATATCTATGCTTAGAGGTGAAGGGACTAGTACAATAG 493 | |||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| Sbjct 241 CCTTCTTGAACCTTCACCCGGAAATATCGATGCTTAGAGGTGAAGGGACCAATACAATAG 300 Query 494 TCAATCCAAGAAAGGAAACGTCTTCTGGACCTGTTGTC-GAGGATTTTGAAGAGCCATCT 552 ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 301 TCAATCCAAGAAAGGAAACGTCTTCTGGACCTGTT-ACTGAGGATTTTGAAGAGCCATCT 359 Query 553 GCTCCGAGTAACTACAATGAGGCGAGGATTAAGGTTATTGGTGTGGGAGGTGGTGGATCA 612 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 360 GCTCCGAGTAACTACAATGAGGCGAGGATTAAAGTTATTGGTGTGGGAGGTGGTGGATCA 419 Query 613 AATGCTGTGAATCGTATGATAGAGAGTGAAATGTCAGGTGTGGAGTTCTGGATTGTCAAC 672 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 420 AATGCTGTGAATCGTATGATAGAGAGTGAAATGTCAGGCGTGGAGTTCTGGATTGTGAAC 479 Query 673 ACTGATATCCAGGCTATGAGAATGTCTCCTGTTTTGCCTGATAATAGGTTACAAATTGGT 732 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 480 ACTGATATCCAGGCTATGAGAATGTCTCCTGTTTTACCTGATAATAGGTTACAAATTGGT 539 Query 733 AAGGAGTTGACTAGGGGTTTAGGTGCTGGAGGAAATCCAGAAATCGGTATGAATGCTGCT 792 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 540 AAGGAGTTGACTAGGGGTTTAGGTGCTGGAGGGAATCCAGAGATCGGTATGAATGCTGCT 599 Query 793 AGAGAGAGCAAAGAAGTTATTGAAGAAGCTCTTTATGGCTCAGATATGGTCTTTGTCACA 852 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 600 AGAGAGAGCAAAGAAGTTATTGAAGAGGCTCTCTATGGCTCAGATATGGTCTTTGTCACA 659 Query 853 GCTGGAATGGGCGGTGGAACTGGCACTGGTGCAGCCCCTGTAATTGCAGGAATTGCCAAG 912 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GCTGGAATGGGTGGTGGAACTGGCACTGGTGCAGCCCCTGTAATTGCAGGAATTGCCAAG 719 Query 913 GCGATGGGTATATTGACAGTTGGTATTGCCACTACGCCTTTCTCGTTTGAGGGTCGAAGA 972 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 720 GCGATGGGTATATTGACAGTTGGCATTGCCACAACGCCTTTCTCGTTTGAGGGTCGAAGA 779 Query 973 AGAACTGTTCAGGCTCAAGAAGGGCTTGCATCTCTCAGAGACAATGTTGACACTCTCATC 1032 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 AGAACGGTTCAGGCCCAAGAAGGGCTTGCATCTCTCAGAGACAATGTTGACACTCTCATC 839 Query 1033 GTCATTCCAAATGACAAGTTGCTTACAGCTGTCTCTCAGTCTACTCCGGTAACAGAAGCA 1092 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 840 GTCATTCCAAATGACAAGTTACTTACAGCTGTCTCTCAGTCTACTCCGGTAACGGAAGCA 899 Query 1093 TTTAATCTAGCTGATGATATACTCCGTCAGGGGGTTCGTGGGATATCTGATATCATTACG 1152 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 900 TTTAATCTAGCTGATGATATACTCCGTCAAGGGGTTCGTGGGATATCTGATATCATTACG 959 Query 1153 ATTCCTGGTTTGGTGAATGTGGATTTTGCTGATGTGAGAGCTATAATGGCAAATGCGGGG 1212 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 960 ATTCCTGGATTGGTGAATGTGGATTTTGCTGATGTGAGAGCTATAATGGCGAATGCGGGG 1019 Query 1213 TCTTCATTGATGGGAATAGGAACTGCGACAGGAAAGAGTCGGGCAAGAGATGCTGCGCTA 1272 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1020 TCTTCATTGATGGGAATAGGAACTGCAACAGGAAAGAGTCGGGCAAGAGATGCTGCTCTA 1079 Query 1273 AATGCAATCCAATCTCCTTTGTTAGATATTGGGATTGAGAGAGCCACTGGAATTGTTTGG 1332 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 AATGCGATCCAATCACCTTTGTTAGATATTGGGATTGAGAGAGCCACTGGAATTGTTTGG 1139 Query 1333 AACATTACTGGCGGAAGTGACTTGACATTGTTTGAGGTAAATGCTGCTGCAGAAGTAATA 1392 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1140 AACATTACTGGTGGAAGTGACTTGACATTGTTTGAGGTAAATGCTGCTGCGGAAGTAATA 1199 Query 1393 TATGATCTTGTCGATCCAACTGCCAATCTTATATTCGGTGCTGTTGTAGATCCAGCCCTC 1452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 TATGATCTTGTCGATCCAACTGCCAATCTTATATTCGGTGCTGTTGTAGATCCAGCCCTC 1259 Query 1453 AGCGGTCAAGTAAGCATAACCCTGATAGCTACGGGTTTCAAACGACAAGAAGAGGGAGAA 1512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 AGCGGTCAAGTAAGCATAACCCTGATAGCTACGGGTTTCAAACGACAAGAAGAGGGAGAA 1319 Query 1513 GGACGAACAGTTCAGATGGTACAAGCAGATGCTGCGTCAGTTGGAGCTACAAGAAGACCC 1572 |||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1320 GGACGAGCGGTTCAGATGGCACAAGCAGATGCTGCGTCAGTTGGAGCTACAAGAAGACCC 1379 Query 1573 TCTTCTTCCTTTAGAGAAAGCGGTTCAGTGGAGATCCCAGAGTTCTTGAAGAAGAAAGGC 1632 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1380 TCTTCCTCCTTTAGAGAAAGCGGTTCAGTGGAGATCCCGGAGTTCTTGAAGAAGAAAGGC 1439 Query 1633 AGCTCTCGTTATCCCCGAGTCTAAAGCCC-AATCTAATCACTA 1674 |||||||||||||||||||||||| |||| || |||||||||| Sbjct 1440 AGCTCTCGTTATCCCCGAGTCTAA-GCCCGAA-CTAATCACTA 1480 > Ahg485646 jgi|Araly1|485646|fgenesh2_kg.5__1638__AT3G52750.1 Length=1766 Score = 1098 bits (594), Expect = 0.0 Identities = 950/1123 (85%), Gaps = 19/1123 (2%) Strand=Plus/Plus Query 532 GAGGATTTTGAAGAGCCATCTGCTCCGAGTA-AC-TACAATGAGGCGA-GGATTAAGGTT 588 |||||||| || ||| |||| |||| | | || || |||||||| | |||| || ||| Sbjct 462 GAGGATTTGGATGAGTTATCTACTCC-A-AACACTTATAATGAGGC-ACGGATAAAAGTT 518 Query 589 ATTGGTGTGGGAGGTGGTGGATCAAATGCTGTGAATCGTATGATAGAGAGTGAAATG-TC 647 || || || ||||||||||| ||||| ||||||||||||||||| |||||||| ||| | Sbjct 519 ATCGGCGTTGGAGGTGGTGGTTCAAACGCTGTGAATCGTATGATTGAGAGTGAGATGAT- 577 Query 648 AGGTGTGGAGTTCTGGATTGTCAACACTGATATCCAGGCTATGAGAATGTCTCCTGTTTT 707 ||||||||||| |||||||| || || ||||| || || |||||||||||||| ||||| Sbjct 578 TGGTGTGGAGTTTTGGATTGTAAATACCGATATTCAAGCAATGAGAATGTCTCCGGTTTT 637 Query 708 GCCTGATAATAGGTTACAAATTGGTAAGGAGTTGACTAGGGGTTTAGGTGCTGGAGGAAA 767 || || ||||||||||| |||||||||||||||||||| ||||||||||||||||| || Sbjct 638 CCCAGACAATAGGTTACAGATTGGTAAGGAGTTGACTAGAGGTTTAGGTGCTGGAGGTAA 697 Query 768 TCCAGAAATCGGTATGAATGCTGCTAGAGAGAGCAAAGAAGTTATTGAAGAAGCTCTTTA 827 ||| || || || ||||||||||||| ||| |||||||||| ||| ||||||| ||||| Sbjct 698 TCCTGAGATTGGAATGAATGCTGCTACAGAAAGCAAAGAAGCTATCCAAGAAGCGCTTTA 757 Query 828 TGGCTCAGATATGGTCTTTGTCACAGCTGGAATGGGCGGTGGAACTGGCACTGGTGCAGC 887 ||| |||||||||||||||||||||||||||||||| |||||||| ||||| || | || Sbjct 758 TGGTTCAGATATGGTCTTTGTCACAGCTGGAATGGGTGGTGGAACCGGCACAGGCGGGGC 817 Query 888 CCCTGTAATTGCAGGAATTGCCAAGGCGATGGGTATATTGACAGTTGGTATTGCCACTAC 947 ||| |||||||||| |||| || ||||||||||||||||| |||||||||| ||| || Sbjct 818 TCCTATAATTGCAGGGGTTGCAAAAGCGATGGGTATATTGACGGTTGGTATTGTCACAAC 877 Query 948 GCCTTTCTCGTTTGAGGGTCGAAGAAGAACTGTTCAGGCTCAAGAAGGGCTTGCATCTCT 1007 ||||||||| |||||||| || |||||| | || |||||||| |||||| ||||| | || Sbjct 878 GCCTTTCTCATTTGAGGGACGGAGAAGAGCAGTCCAGGCTCAGGAAGGGATTGCAGCCCT 937 Query 1008 CAGAGACAATGTTGACACTCTCATCGTCATTCCAAATGACAAGTTGCTTACAGCTGTCTC 1067 |||||| |||||||||||||| || || |||||||| |||||||| || |||| ||||| Sbjct 938 CAGAGATAATGTTGACACTCTTATTGTTATTCCAAACGACAAGTTACTCGCAGCAGTCTC 997 Query 1068 TCAGTCTACTCCGGTAACAGAAGCATTTAATCTAGCTGATGATATACTCCGTCAGGGGGT 1127 |||||| ||||| || ||||||||||||||||| || ||||||||||| ||||| || || Sbjct 998 TCAGTCCACTCCAGTTACAGAAGCATTTAATCTGGCAGATGATATACTTCGTCAAGGAGT 1057 Query 1128 TCGTGGGATATCTGATATCATTACGATTCCTGGTTTGGTGAATGTGGATTTTGCTGATGT 1187 || || |||||||||||||| ||||||||||| ||||| |||||||||||||||||||| Sbjct 1058 CCGCGGAATATCTGATATCATCACGATTCCTGGATTGGTCAATGTGGATTTTGCTGATGT 1117 Query 1188 GAGAGCTATAATGGCAAATGCGGGGTCTTCATTGATGGGAATAGGAACTGCGACAGGAAA 1247 ||| ||||||||||||||||| || ||||| |||||||||||||||||||| |||||||| Sbjct 1118 GAGGGCTATAATGGCAAATGCAGGTTCTTCGTTGATGGGAATAGGAACTGCAACAGGAAA 1177 Query 1248 GAGTCGGGCAAGAGATGCTGCGCTAAATGCAATCCAATCTCCTTTGTTAGATATTGGGAT 1307 || ||| |||||||||||||| |||| || |||||||| ||||||||||||||||| || Sbjct 1178 GACTCGAGCAAGAGATGCTGCATTAAACGCGATCCAATCACCTTTGTTAGATATTGGCAT 1237 Query 1308 TGAGAGAGCCACTGGAATTGTTTGGAACATTACTGGCGGAAGTGACTTGACATTGTTTGA 1367 |||||||||||||||||||||||||||||| ||||| ||||||||||| || |||| || Sbjct 1238 TGAGAGAGCCACTGGAATTGTTTGGAACATAACTGGTGGAAGTGACTTAACCCTGTTCGA 1297 Query 1368 GGTAAATGCTGCTGCAGAAGTAATATATGATCTTGTCGATCCAACTGCCAATCTTATATT 1427 ||||||||||||||||||||| || || || ||||| ||||| || |||||||||||||| Sbjct 1298 GGTAAATGCTGCTGCAGAAGTGATTTACGACCTTGTTGATCCGACAGCCAATCTTATATT 1357 Query 1428 CGGTGCTGTTGTAGATCCAGCCC-TCAGCGGTCAAGTAAGCATAACCCTGATAGCTACGG 1486 |||||||| || |||||| || | || |||||| |||| || ||||| ||||| || | Sbjct 1358 TGGTGCTGTGGTGGATCCATCCTAT-AGTGGTCAAATAAGTATTACCCTAATAGCAACCG 1416 Query 1487 GTTTCAAACGACAAGAAGAGGGAGAAGG-ACGAACAGTTCAGATGGTACAAGCAGATGCT 1545 |||||||||| |||||||| |||||||| | | || ||||| | ||||| ||||| Sbjct 1417 GTTTCAAACGCCAAGAAGAAGGAGAAGGGAGGC-CACTTCAGGCGACGCAAGCGGATGCA 1475 Query 1546 GCGTCAGTTGGAGCTACAAGAAGACCCTCTTCTTCCTTTAGAGAAAGCGGTTC-AGTGGA 1604 ||||| ||||| |||||| | || ||||| || || | ||| || |||| | | || Sbjct 1476 ---TCAGTGGGAGCCACAAGACGTCCTTCTTCATCATTCACTGAAGGCAGTTCCA-TAGA 1531 Query 1605 GATCCCAGAGTTCTTGAAGAAGAAAGG-CAGCTCTCGTTATCC 1646 ||||||||||||||||||||||||||| | ||||||| ||||| Sbjct 1532 GATCCCAGAGTTCTTGAAGAAGAAAGGTC-GCTCTCGCTATCC 1573 > Ahg901563 jgi|Araly1|901563|Al_scaffold_0004_2213 Length=495 Score = 285 bits (154), Expect = 8e-76 Identities = 202/226 (89%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 502 AGAAAGGAAACGTCTTCTGGACCTGTTGTCGAGGATTTTGAAGAGCCATCTGCTCCGAGT 561 ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 55 AGAGAGGAAACGTCTTCTGGTCCTGTTGTCGAGGATTTTGAAGAGCCATCTGCTCCGAGC 114 Query 562 AACTACAATGAGGCGAGGATTAAGGTTATTGGTGTGGGAGGTGGTGGATCAAATGCTGTG 621 | |||||||| || |||||||| ||||||| ||||||||| |||||||||||| |||| Sbjct 115 AGTTACAATGACGCAAGGATTAAAGTTATTGCTGTGGGAGGCAGTGGATCAAATGTTGTG 174 Query 622 AATCGTATGATAGAGAGTGAAATGTCAGGTGTGGAGTTCTGGATTGTCAACACTGATATC 681 |||| |||||||||||||||||||||| | ||||| ||||||||||| || || ||||| Sbjct 175 AATCATATGATAGAGAGTGAAATGTCATGCGTGGAATTCTGGATTGTGAATACCGATATT 234 Query 682 CAGGCTATGAGAATGTCTCCTGTTTTGCCTGATAATAGGTTACAAA 727 |||||||||||||||||||| ||||| || ||||||||||| |||| Sbjct 235 CAGGCTATGAGAATGTCTCCCGTTTTACCAGATAATAGGTTGCAAA 280 Score = 113 bits (61), Expect = 4e-24 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 1071 GTCTACTCCGGTAACAGAAGCATTTAATCTAGCTGATGATATACTCCGTCAGGGGGTTCG 1130 |||||||||||||| ||||||||||||||||||||||||||||| | || ||||||| | Sbjct 408 GTCTACTCCGGTAATGGAAGCATTTAATCTAGCTGATGATATACTTCATCGGGGGGTTAG 467 Query 1131 TGGGATATCTGATATCATT 1149 ||||||||||||||||||| Sbjct 468 TGGGATATCTGATATCATT 486 > Ahg887610 jgi|Araly1|887610|Al_scaffold_0053_4 Length=366 Score = 113 bits (61), Expect = 4e-24 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 1071 GTCTACTCCGGTAACAGAAGCATTTAATCTAGCTGATGATATACTCCGTCAGGGGGTTCG 1130 |||||||||||||| ||||||||||||||||||||||||||||| | || ||||||| | Sbjct 279 GTCTACTCCGGTAATGGAAGCATTTAATCTAGCTGATGATATACTTCATCGGGGGGTTAG 338 Query 1131 TGGGATATCTGATATCATT 1149 ||||||||||||||||||| Sbjct 339 TGGGATATCTGATATCATT 357 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73209450890 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5