BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36250.1
Length=1948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934249 jgi|Araly1|934249|scaffold_402237.1 2420 0.0
Ahg485646 jgi|Araly1|485646|fgenesh2_kg.5__1638__AT3G52750.1 1098 0.0
Ahg901563 jgi|Araly1|901563|Al_scaffold_0004_2213 285 8e-76
Ahg887610 jgi|Araly1|887610|Al_scaffold_0053_4 113 4e-24
> Ahg934249 jgi|Araly1|934249|scaffold_402237.1
Length=1484
Score = 2420 bits (1310), Expect = 0.0
Identities = 1427/1483 (96%), Gaps = 10/1483 (1%)
Strand=Plus/Plus
Query 198 TCCTGCAGTGATTGGTCTCATTATGGCAACTTACGTTTCACCGTGTTTTACTCCTTCGGA 257
|||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 2 TCCTGCAGTGGTTGGTTTCAATATGGCAACTTACGTTTCACCGTGTTTCACTCCTTCGGA 61
Query 258 TTCTCGGTTACTAACTGTTCTTAGAAAGAATGTTTTACCGGAGAATCATTTAGGCA-GGT 316
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 62 TTCTCGGTTGCTAACTGTTCTTAGAAAGAATGTATTACCGGAGAATCATTTAGGCAGGGT 121
Query 317 TGAACTCCATTAGAACGATTGACAGTAAGAAAAACCGAGTTGTTG-T--TGCCGCTCAGA 373
| ||||||||||||| |||||| ||||||||||||||||| |||| | ||| |||||||
Sbjct 122 T-AACTCCATTAGAATGATTGAGAGTAAGAAAAACCGAGTAGTTGCTGCTGCTGCTCAGA 180
Query 374 AATCTGAATCTTCTCCAATCAGAAACTCTCCACGGCATTACCAAAGCCAAGCTCAAGATC 433
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 AATCTGAATCTTCGCCAATCAGAAACTCTCCACGGCATTTCCAAAGCCAAGCTCAAGATC 240
Query 434 CTTTCTTGAACCTTCACCCGGAAATATCTATGCTTAGAGGTGAAGGGACTAGTACAATAG 493
| |||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||
Sbjct 241 CCTTCTTGAACCTTCACCCGGAAATATCGATGCTTAGAGGTGAAGGGACCAATACAATAG 300
Query 494 TCAATCCAAGAAAGGAAACGTCTTCTGGACCTGTTGTC-GAGGATTTTGAAGAGCCATCT 552
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 301 TCAATCCAAGAAAGGAAACGTCTTCTGGACCTGTT-ACTGAGGATTTTGAAGAGCCATCT 359
Query 553 GCTCCGAGTAACTACAATGAGGCGAGGATTAAGGTTATTGGTGTGGGAGGTGGTGGATCA 612
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 GCTCCGAGTAACTACAATGAGGCGAGGATTAAAGTTATTGGTGTGGGAGGTGGTGGATCA 419
Query 613 AATGCTGTGAATCGTATGATAGAGAGTGAAATGTCAGGTGTGGAGTTCTGGATTGTCAAC 672
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 420 AATGCTGTGAATCGTATGATAGAGAGTGAAATGTCAGGCGTGGAGTTCTGGATTGTGAAC 479
Query 673 ACTGATATCCAGGCTATGAGAATGTCTCCTGTTTTGCCTGATAATAGGTTACAAATTGGT 732
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 ACTGATATCCAGGCTATGAGAATGTCTCCTGTTTTACCTGATAATAGGTTACAAATTGGT 539
Query 733 AAGGAGTTGACTAGGGGTTTAGGTGCTGGAGGAAATCCAGAAATCGGTATGAATGCTGCT 792
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 540 AAGGAGTTGACTAGGGGTTTAGGTGCTGGAGGGAATCCAGAGATCGGTATGAATGCTGCT 599
Query 793 AGAGAGAGCAAAGAAGTTATTGAAGAAGCTCTTTATGGCTCAGATATGGTCTTTGTCACA 852
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 600 AGAGAGAGCAAAGAAGTTATTGAAGAGGCTCTCTATGGCTCAGATATGGTCTTTGTCACA 659
Query 853 GCTGGAATGGGCGGTGGAACTGGCACTGGTGCAGCCCCTGTAATTGCAGGAATTGCCAAG 912
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCTGGAATGGGTGGTGGAACTGGCACTGGTGCAGCCCCTGTAATTGCAGGAATTGCCAAG 719
Query 913 GCGATGGGTATATTGACAGTTGGTATTGCCACTACGCCTTTCTCGTTTGAGGGTCGAAGA 972
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 720 GCGATGGGTATATTGACAGTTGGCATTGCCACAACGCCTTTCTCGTTTGAGGGTCGAAGA 779
Query 973 AGAACTGTTCAGGCTCAAGAAGGGCTTGCATCTCTCAGAGACAATGTTGACACTCTCATC 1032
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGAACGGTTCAGGCCCAAGAAGGGCTTGCATCTCTCAGAGACAATGTTGACACTCTCATC 839
Query 1033 GTCATTCCAAATGACAAGTTGCTTACAGCTGTCTCTCAGTCTACTCCGGTAACAGAAGCA 1092
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 840 GTCATTCCAAATGACAAGTTACTTACAGCTGTCTCTCAGTCTACTCCGGTAACGGAAGCA 899
Query 1093 TTTAATCTAGCTGATGATATACTCCGTCAGGGGGTTCGTGGGATATCTGATATCATTACG 1152
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 900 TTTAATCTAGCTGATGATATACTCCGTCAAGGGGTTCGTGGGATATCTGATATCATTACG 959
Query 1153 ATTCCTGGTTTGGTGAATGTGGATTTTGCTGATGTGAGAGCTATAATGGCAAATGCGGGG 1212
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 960 ATTCCTGGATTGGTGAATGTGGATTTTGCTGATGTGAGAGCTATAATGGCGAATGCGGGG 1019
Query 1213 TCTTCATTGATGGGAATAGGAACTGCGACAGGAAAGAGTCGGGCAAGAGATGCTGCGCTA 1272
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1020 TCTTCATTGATGGGAATAGGAACTGCAACAGGAAAGAGTCGGGCAAGAGATGCTGCTCTA 1079
Query 1273 AATGCAATCCAATCTCCTTTGTTAGATATTGGGATTGAGAGAGCCACTGGAATTGTTTGG 1332
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AATGCGATCCAATCACCTTTGTTAGATATTGGGATTGAGAGAGCCACTGGAATTGTTTGG 1139
Query 1333 AACATTACTGGCGGAAGTGACTTGACATTGTTTGAGGTAAATGCTGCTGCAGAAGTAATA 1392
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1140 AACATTACTGGTGGAAGTGACTTGACATTGTTTGAGGTAAATGCTGCTGCGGAAGTAATA 1199
Query 1393 TATGATCTTGTCGATCCAACTGCCAATCTTATATTCGGTGCTGTTGTAGATCCAGCCCTC 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TATGATCTTGTCGATCCAACTGCCAATCTTATATTCGGTGCTGTTGTAGATCCAGCCCTC 1259
Query 1453 AGCGGTCAAGTAAGCATAACCCTGATAGCTACGGGTTTCAAACGACAAGAAGAGGGAGAA 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AGCGGTCAAGTAAGCATAACCCTGATAGCTACGGGTTTCAAACGACAAGAAGAGGGAGAA 1319
Query 1513 GGACGAACAGTTCAGATGGTACAAGCAGATGCTGCGTCAGTTGGAGCTACAAGAAGACCC 1572
|||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GGACGAGCGGTTCAGATGGCACAAGCAGATGCTGCGTCAGTTGGAGCTACAAGAAGACCC 1379
Query 1573 TCTTCTTCCTTTAGAGAAAGCGGTTCAGTGGAGATCCCAGAGTTCTTGAAGAAGAAAGGC 1632
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1380 TCTTCCTCCTTTAGAGAAAGCGGTTCAGTGGAGATCCCGGAGTTCTTGAAGAAGAAAGGC 1439
Query 1633 AGCTCTCGTTATCCCCGAGTCTAAAGCCC-AATCTAATCACTA 1674
|||||||||||||||||||||||| |||| || ||||||||||
Sbjct 1440 AGCTCTCGTTATCCCCGAGTCTAA-GCCCGAA-CTAATCACTA 1480
> Ahg485646 jgi|Araly1|485646|fgenesh2_kg.5__1638__AT3G52750.1
Length=1766
Score = 1098 bits (594), Expect = 0.0
Identities = 950/1123 (85%), Gaps = 19/1123 (2%)
Strand=Plus/Plus
Query 532 GAGGATTTTGAAGAGCCATCTGCTCCGAGTA-AC-TACAATGAGGCGA-GGATTAAGGTT 588
|||||||| || ||| |||| |||| | | || || |||||||| | |||| || |||
Sbjct 462 GAGGATTTGGATGAGTTATCTACTCC-A-AACACTTATAATGAGGC-ACGGATAAAAGTT 518
Query 589 ATTGGTGTGGGAGGTGGTGGATCAAATGCTGTGAATCGTATGATAGAGAGTGAAATG-TC 647
|| || || ||||||||||| ||||| ||||||||||||||||| |||||||| ||| |
Sbjct 519 ATCGGCGTTGGAGGTGGTGGTTCAAACGCTGTGAATCGTATGATTGAGAGTGAGATGAT- 577
Query 648 AGGTGTGGAGTTCTGGATTGTCAACACTGATATCCAGGCTATGAGAATGTCTCCTGTTTT 707
||||||||||| |||||||| || || ||||| || || |||||||||||||| |||||
Sbjct 578 TGGTGTGGAGTTTTGGATTGTAAATACCGATATTCAAGCAATGAGAATGTCTCCGGTTTT 637
Query 708 GCCTGATAATAGGTTACAAATTGGTAAGGAGTTGACTAGGGGTTTAGGTGCTGGAGGAAA 767
|| || ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 638 CCCAGACAATAGGTTACAGATTGGTAAGGAGTTGACTAGAGGTTTAGGTGCTGGAGGTAA 697
Query 768 TCCAGAAATCGGTATGAATGCTGCTAGAGAGAGCAAAGAAGTTATTGAAGAAGCTCTTTA 827
||| || || || ||||||||||||| ||| |||||||||| ||| ||||||| |||||
Sbjct 698 TCCTGAGATTGGAATGAATGCTGCTACAGAAAGCAAAGAAGCTATCCAAGAAGCGCTTTA 757
Query 828 TGGCTCAGATATGGTCTTTGTCACAGCTGGAATGGGCGGTGGAACTGGCACTGGTGCAGC 887
||| |||||||||||||||||||||||||||||||| |||||||| ||||| || | ||
Sbjct 758 TGGTTCAGATATGGTCTTTGTCACAGCTGGAATGGGTGGTGGAACCGGCACAGGCGGGGC 817
Query 888 CCCTGTAATTGCAGGAATTGCCAAGGCGATGGGTATATTGACAGTTGGTATTGCCACTAC 947
||| |||||||||| |||| || ||||||||||||||||| |||||||||| ||| ||
Sbjct 818 TCCTATAATTGCAGGGGTTGCAAAAGCGATGGGTATATTGACGGTTGGTATTGTCACAAC 877
Query 948 GCCTTTCTCGTTTGAGGGTCGAAGAAGAACTGTTCAGGCTCAAGAAGGGCTTGCATCTCT 1007
||||||||| |||||||| || |||||| | || |||||||| |||||| ||||| | ||
Sbjct 878 GCCTTTCTCATTTGAGGGACGGAGAAGAGCAGTCCAGGCTCAGGAAGGGATTGCAGCCCT 937
Query 1008 CAGAGACAATGTTGACACTCTCATCGTCATTCCAAATGACAAGTTGCTTACAGCTGTCTC 1067
|||||| |||||||||||||| || || |||||||| |||||||| || |||| |||||
Sbjct 938 CAGAGATAATGTTGACACTCTTATTGTTATTCCAAACGACAAGTTACTCGCAGCAGTCTC 997
Query 1068 TCAGTCTACTCCGGTAACAGAAGCATTTAATCTAGCTGATGATATACTCCGTCAGGGGGT 1127
|||||| ||||| || ||||||||||||||||| || ||||||||||| ||||| || ||
Sbjct 998 TCAGTCCACTCCAGTTACAGAAGCATTTAATCTGGCAGATGATATACTTCGTCAAGGAGT 1057
Query 1128 TCGTGGGATATCTGATATCATTACGATTCCTGGTTTGGTGAATGTGGATTTTGCTGATGT 1187
|| || |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1058 CCGCGGAATATCTGATATCATCACGATTCCTGGATTGGTCAATGTGGATTTTGCTGATGT 1117
Query 1188 GAGAGCTATAATGGCAAATGCGGGGTCTTCATTGATGGGAATAGGAACTGCGACAGGAAA 1247
||| ||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||
Sbjct 1118 GAGGGCTATAATGGCAAATGCAGGTTCTTCGTTGATGGGAATAGGAACTGCAACAGGAAA 1177
Query 1248 GAGTCGGGCAAGAGATGCTGCGCTAAATGCAATCCAATCTCCTTTGTTAGATATTGGGAT 1307
|| ||| |||||||||||||| |||| || |||||||| ||||||||||||||||| ||
Sbjct 1178 GACTCGAGCAAGAGATGCTGCATTAAACGCGATCCAATCACCTTTGTTAGATATTGGCAT 1237
Query 1308 TGAGAGAGCCACTGGAATTGTTTGGAACATTACTGGCGGAAGTGACTTGACATTGTTTGA 1367
|||||||||||||||||||||||||||||| ||||| ||||||||||| || |||| ||
Sbjct 1238 TGAGAGAGCCACTGGAATTGTTTGGAACATAACTGGTGGAAGTGACTTAACCCTGTTCGA 1297
Query 1368 GGTAAATGCTGCTGCAGAAGTAATATATGATCTTGTCGATCCAACTGCCAATCTTATATT 1427
||||||||||||||||||||| || || || ||||| ||||| || ||||||||||||||
Sbjct 1298 GGTAAATGCTGCTGCAGAAGTGATTTACGACCTTGTTGATCCGACAGCCAATCTTATATT 1357
Query 1428 CGGTGCTGTTGTAGATCCAGCCC-TCAGCGGTCAAGTAAGCATAACCCTGATAGCTACGG 1486
|||||||| || |||||| || | || |||||| |||| || ||||| ||||| || |
Sbjct 1358 TGGTGCTGTGGTGGATCCATCCTAT-AGTGGTCAAATAAGTATTACCCTAATAGCAACCG 1416
Query 1487 GTTTCAAACGACAAGAAGAGGGAGAAGG-ACGAACAGTTCAGATGGTACAAGCAGATGCT 1545
|||||||||| |||||||| |||||||| | | || ||||| | ||||| |||||
Sbjct 1417 GTTTCAAACGCCAAGAAGAAGGAGAAGGGAGGC-CACTTCAGGCGACGCAAGCGGATGCA 1475
Query 1546 GCGTCAGTTGGAGCTACAAGAAGACCCTCTTCTTCCTTTAGAGAAAGCGGTTC-AGTGGA 1604
||||| ||||| |||||| | || ||||| || || | ||| || |||| | | ||
Sbjct 1476 ---TCAGTGGGAGCCACAAGACGTCCTTCTTCATCATTCACTGAAGGCAGTTCCA-TAGA 1531
Query 1605 GATCCCAGAGTTCTTGAAGAAGAAAGG-CAGCTCTCGTTATCC 1646
||||||||||||||||||||||||||| | ||||||| |||||
Sbjct 1532 GATCCCAGAGTTCTTGAAGAAGAAAGGTC-GCTCTCGCTATCC 1573
> Ahg901563 jgi|Araly1|901563|Al_scaffold_0004_2213
Length=495
Score = 285 bits (154), Expect = 8e-76
Identities = 202/226 (89%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 502 AGAAAGGAAACGTCTTCTGGACCTGTTGTCGAGGATTTTGAAGAGCCATCTGCTCCGAGT 561
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 55 AGAGAGGAAACGTCTTCTGGTCCTGTTGTCGAGGATTTTGAAGAGCCATCTGCTCCGAGC 114
Query 562 AACTACAATGAGGCGAGGATTAAGGTTATTGGTGTGGGAGGTGGTGGATCAAATGCTGTG 621
| |||||||| || |||||||| ||||||| ||||||||| |||||||||||| ||||
Sbjct 115 AGTTACAATGACGCAAGGATTAAAGTTATTGCTGTGGGAGGCAGTGGATCAAATGTTGTG 174
Query 622 AATCGTATGATAGAGAGTGAAATGTCAGGTGTGGAGTTCTGGATTGTCAACACTGATATC 681
|||| |||||||||||||||||||||| | ||||| ||||||||||| || || |||||
Sbjct 175 AATCATATGATAGAGAGTGAAATGTCATGCGTGGAATTCTGGATTGTGAATACCGATATT 234
Query 682 CAGGCTATGAGAATGTCTCCTGTTTTGCCTGATAATAGGTTACAAA 727
|||||||||||||||||||| ||||| || ||||||||||| ||||
Sbjct 235 CAGGCTATGAGAATGTCTCCCGTTTTACCAGATAATAGGTTGCAAA 280
Score = 113 bits (61), Expect = 4e-24
Identities = 73/79 (92%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 1071 GTCTACTCCGGTAACAGAAGCATTTAATCTAGCTGATGATATACTCCGTCAGGGGGTTCG 1130
|||||||||||||| ||||||||||||||||||||||||||||| | || ||||||| |
Sbjct 408 GTCTACTCCGGTAATGGAAGCATTTAATCTAGCTGATGATATACTTCATCGGGGGGTTAG 467
Query 1131 TGGGATATCTGATATCATT 1149
|||||||||||||||||||
Sbjct 468 TGGGATATCTGATATCATT 486
> Ahg887610 jgi|Araly1|887610|Al_scaffold_0053_4
Length=366
Score = 113 bits (61), Expect = 4e-24
Identities = 73/79 (92%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 1071 GTCTACTCCGGTAACAGAAGCATTTAATCTAGCTGATGATATACTCCGTCAGGGGGTTCG 1130
|||||||||||||| ||||||||||||||||||||||||||||| | || ||||||| |
Sbjct 279 GTCTACTCCGGTAATGGAAGCATTTAATCTAGCTGATGATATACTTCATCGGGGGGTTAG 338
Query 1131 TGGGATATCTGATATCATT 1149
|||||||||||||||||||
Sbjct 339 TGGGATATCTGATATCATT 357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73209450890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5