BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36270.1
Length=1720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321332 jgi|Araly1|321332|fgenesh1_pm.C_scaffold_4001389 2013 0.0
> Ahg321332 jgi|Araly1|321332|fgenesh1_pm.C_scaffold_4001389
Length=1320
Score = 2013 bits (1090), Expect = 0.0
Identities = 1253/1331 (94%), Gaps = 13/1331 (1%)
Strand=Plus/Plus
Query 176 ATGGTAACTAGAGAAACGAAGTTGACGTCAGAGCGAGAAGTAGAGTCGTCCATGGCGCAA 235
||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| ||||
Sbjct 1 ATGGTAACTAGAGAAACGAAGTTGATGTCAGAGCGAGAAGTGGAGTCGTCGATGGGGCAA 60
Query 236 GCGAGACATAATGGAGGAGGTGGTGGTGAGAATCATCCGTTTACTTCTTTGGGAAGACAA 295
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GCGAGACATAATGGAGGAGGTGGTGGTGAGAATCATCCGTTTACTTCATTGGGAAGACAA 120
Query 296 TCCTCTATCTACTCATTGACCCTTGACGAGTTCCAACATGCTTTATGTGAGAACGGCAAG 355
|| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 121 TCTTCTATCTACTCATTGACCCTCGACGAGTTCCAACATGCTCTATGTGAGAACGGCAAG 180
Query 356 AACTTTGGGTCCATGAACATGGACGAGTTTCTTGTCTCTATTTGGAACGCAGAGGAGAAT 415
||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 AACTTCGGGTCGATGAACATGGACGAGTTTCTCGTCTCTATTTGGAACGCAGAGGAGAAT 240
Query 416 AATAACAATCAACAA-CAAGCAGCAGCAGCTGCAGGTTCACATTCTGTTCCGGCTAATCA 474
||||||||||||||| | |||||||||||| |||| ||||||||||||||||||||||||
Sbjct 241 AATAACAATCAACAAGC-AGCAGCAGCAGCCGCAGCTTCACATTCTGTTCCGGCTAATCA 299
Query 475 CAATGGTTTCAACAACAACAATAACAATGGAGGCGAGGGTGGTGTTGGTGTCTTTAGTGG 534
||||||||||||||||||| |||||||||||||| || | |||||||||| ||||
Sbjct 300 CAATGGTTTCAACAACAAC---AACAATGGAGGCGA----GG-G-TGGTGTCTTTGGTGG 350
Query 535 TGGTTCTAGAGGCAACGAAGATGCTAACAATAAGAGAGGGATAGCGAACGAGTCTAGTCT 594
||||||||| ||||||||||| ||||| |||||||||||||||||||| ||| |||||||
Sbjct 351 TGGTTCTAGGGGCAACGAAGAGGCTAATAATAAGAGAGGGATAGCGAAGGAGCCTAGTCT 410
Query 595 TCCTCGACAAGGCTCTTTGACACTTCCAGCTCCGCTTTGTAGGAAGACTGTTGATGAGGT 654
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TCCTCGACAAGGCTCGTTGACACTTCCAGCTCCGCTTTGTAGGAAGACTGTTGATGAGGT 470
Query 655 TTGGTCTGAGATACATAGAGGTGGTGGTAGC-GGTAATGGAGGAGACAGCAATGGACGTA 713
||||||||||||||||||||||||||||| | ||| |||| |||||||| ||||||||||
Sbjct 471 TTGGTCTGAGATACATAGAGGTGGTGGTA-CTGGTGATGGTGGAGACAGTAATGGACGTA 529
Query 714 GTAGTAGTAGTAATGGACAGAACAATGCTCAGAACGGCGGTGAGACTGCGGCTAGACAAC 773
|||||||||||||||| || |||||||| ||||| |||||||||||||| ||||||||||
Sbjct 530 GTAGTAGTAGTAATGGTCAAAACAATGCGCAGAATGGCGGTGAGACTGCCGCTAGACAAC 589
Query 774 CGACTTTTGGAGAGATGACACTTGAGGATTTCTTGGTGAAGGCTGGTGTGGTTAGAGAAC 833
|||||||||| |||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 590 CGACTTTTGGTGAGATGACACTTGAGGATTTTTTAGTGAAGGCTGGTGTGGTCAGAGAAC 649
Query 834 ATCCCACTAATCCTAAACCTAATCCAAACCCGAACCAAAACCAAAACCCGTCTAGTGTAA 893
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 650 ATCCCACTAACCCTAAACCTAATCCAAACCCGAACCAAAACCAAAACCCATCTAGTGTTA 709
Query 894 TACCCGCAGCTGCACAGCAACAGCTTTATGGTGTGTTTCAAGGAACCGGTGATCCTTCAT 953
||||||||||||| || || || || |||||||||||||||||||||||||||||| |||
Sbjct 710 TACCCGCAGCTGCGCAACAGCAACTATATGGTGTGTTTCAAGGAACCGGTGATCCTACAT 769
Query 954 TCCCGGGTCAAGCTATGGGTGTGGGTGACCCATCAGGTTATGCTAAAAGGACAGGAGGAG 1013
|||| || || || |||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 770 TCCCAGGACAGGCCATGGGTGTAGGTGACCCATCAGGTTATGGTAAAAGGACAGGAGGAG 829
Query 1014 GAGGGTATCAGCAGGCGCCACCAGTTCAGGCAGGTGTTTGCTATGGAGGTGGCGTTGGGT 1073
|||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 830 GAGGGTATCAGCAGGCGCCACCGGTTCAGGCAGGTGTTTGCTATGGAGGTGGTGGTGGGT 889
Query 1074 TTGGAGCGGGTGGACAGCAAATGGGAATGGTTGGACCGTTAAGCCCGGTGTCTTCAGATG 1133
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 890 TTGGAGCGGGTGGACAGCAAATGGGGATGGTTGGACCGTTAAGCCCGGTGTCGTCAGATG 949
Query 1134 GATTAGGACATGGACAAGTGGATAACATAGGAGGTCAGTATGGAGTAGATATGGGAGGGC 1193
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 950 GATTAGGACATGGACAAGTGGATAACATAGGAGGTCAGTATGGAGTGGATTTGGGAGGGC 1009
Query 1194 TAAGGGGAAGGAAAAGAGTAGTGGATGGTCCAGTGGAGAAAGTAGTGGAGAGAAGACAGA 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1010 TAAGGGGAAGGAAAAGAGTAGTGGATGGTCCAGTGGAGAAAGTAGTGGAGAGAAGGCAGA 1069
Query 1254 GGAGGATGATCAAGAACCGCGAGTCTGCTGCTAGATCTAGAGCAAGAAAACAAGCATATA 1313
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1070 GGAGGATGATCAAGAACCGTGAGTCTGCTGCGAGGTCTAGAGCAAGAAAACAAGCATATA 1129
Query 1314 CAGTGGAATTGGAAGCTGAACTTAACCAGTTGAAAGAAGAGAATGCGCAGCTAAAACATG 1373
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1130 CAGTGGAATTGGAAGCTGAACTGAACCAGTTGAAAGAAGAGAACGCGCAGCTAAAACATG 1189
Query 1374 CATTGGCGGAGTTGGAGAGGAAGAGGAAGCAACAGTATTTTGAGAGTTTGAAGTCAAGGG 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1190 CATTGGCGGAGTTGGAGAGGAAGAGGAAGCAACAGTATTTTGAGAGTTTGAAGACAAGGG 1249
Query 1434 CACAACCGAAATTGCCGAAATCGAACGGGAGATTGCGGACATTGATGAGGAACCCGAGTT 1493
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1250 CACAACCGAAATTGCCAAAATCGAATGGGAGATTGCGGACTTTGATGAGGAACCCGAGTT 1309
Query 1494 GTCCACTCTAA 1504
| |||||||||
Sbjct 1310 GCCCACTCTAA 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64524875030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5