BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36290.1
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482600 jgi|Araly1|482600|fgenesh2_kg.4__1660__AT2G36290.1 1862 0.0
> Ahg482600 jgi|Araly1|482600|fgenesh2_kg.4__1660__AT2G36290.1
Length=1276
Score = 1862 bits (1008), Expect = 0.0
Identities = 1143/1207 (95%), Gaps = 13/1207 (1%)
Strand=Plus/Plus
Query 6 TAGACCAAA-C-ctctctcttctctcacttcccagctacttctctctctcgcgctctctc 63
||||||||| | |||||||||||||| |||||||||||||||||||| | | |||||||
Sbjct 1 TAGACCAAACCTCTCTCTCTTCTCTCGCTTCCCAGCTACTTCTCTCTGT--CTCTCTCTC 58
Query 64 -tttcttttttGGCAATGGCTACTGGATCAACAACCGATTCCGCCAGGTCTCCTTCCTCA 122
||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 59 GTTTCTTTATTGGCAATGGCTACTGGATCAAC-A--GATTCCCCCAGGTCTCCTTCCTCA 115
Query 123 GGTGTTCTCCAAAAGCTGTTATTACTATTCTCTGTCTGTATAGCTACTTCAACTTATAAA 182
||||||||||| ||| |||||||| |||||| ||| ||||||||| |||| ||||||||
Sbjct 116 GGTGTTCTCCAGAAGTTGTTATTAGTATTCTTTGTATGTATAGCTGCTTCGACTTATAAG 175
Query 183 GCAATCCAGCCTCCTCCAT-CAAAGCTATGTGGCTCTCCTGATGGTCCATCCATCACAGG 241
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GCAATCCAGCCTCCTCC-TCCAAAGCTATGTGGCTCTCCTGATGGTCCATCCATCACAGG 234
Query 242 ACCAAGGATTAAGCTAAGAGACGGAAGGCAGTTAGCTTACAAAGAGCATGGAGTTCCTAG 301
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 235 ACCAAGGATTAAGCTAAGAGACGGAAGGCATTTGGCTTACAAAGAGCATGGAGTTCCTAG 294
Query 302 AGATGAAGCTACTCATAAAATCATCGTTGTCCATGGATCTGATAGTTGCAGACATGATAA 361
|||||||||||| ||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 295 AGATGAAGCTACCCATAAAATCGTCGTTGTCCATGGATCTGATAGTTGCAGGCACGATAA 354
Query 362 TGCTTTCGCAGCTCTACTATCACCGGATATTAAGGAAGGACTAGGTGTGTATATGGTTTC 421
||||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||
Sbjct 355 TGCTTTCGCAGCTCTACTATCGCCGGATATAAAAGAAGGACTTGGTGTGTATATGGTTTC 414
Query 422 ATTTGATAGACCTGGTTATGCAGAGAGTGATCCTGACCCAAACCGTACTCCTAAAAGCTT 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 ATTTGATAGACCTGGTTATGCAGAGAGTGATCCTGACCCAAACCGTACTCCTAAAAGCTT 474
Query 482 GGCTTTGGACATTGAAGAGCTTGCTGATCAGTTGAGTCTAGGATCGAAGTTCTATGTCAT 541
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 475 GGCTTTGGACATTGAAGAGCTTGCTGATCAGTTGAGTCTAGGAACCAAGTTCTATGTCAT 534
Query 542 CGGTTACTCGATGGGAGGACAAGCTACTTGGGCATGCCTTAAATACATTCCTCACAGGTT 601
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 535 CGGTTACTCGATGGGAGGACAAGCTACATGGGCATGCCTTAAATACATTCCTCACAGGTT 594
Query 602 GGCTGGAGTAACGCTTGTTGCTCCAGTGGTGAACTATTGGTGGAAGAACTTTCCATCAGA 661
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 595 GGCTGGAGTAATGCTTGTTGCTCCAGTGGTGAACTATTGGTGGAAGAACTTTCCATTAGA 654
Query 662 GATCTCAACCGAAGCTTTTAACCAACAAGGGAGAAATGACCAATGGGCGGTTCGTGTTGC 721
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 655 CATCTCAACCGAAGCTTTTAACCAACAAGCGAGAAATGACCAGTGGGCGGTTCGTGTTGC 714
Query 722 ACACTATGCTCCTTGGCTTACTCATTGGTGGAACTCCCAGAGCTGGTTCCCTGGATCAAG 781
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 715 ACACTATGCTCCTTGGCTTACTCATTGGTGGAACTCCCAGAACTGGTTCCCTGGATCAAG 774
Query 782 TGTTGTGGCTCGCAATCTCGGTATGTTGTCCAAAGCAGACAAAGAGATCATGTTTAAGCT 841
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 775 TGTTGTGGCCCGCAATCTCGGTATGTTGTCCAAATCAGACAAAGAGATCATGTTTAAGCT 834
Query 842 CGGTGCTGCAAGGAGCCAACATGAGGCACAAATAAGGCAACAAGGAACACACGAGACATT 901
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CGGTGCTGCAAGGAGGCAACATGAGGCACAAATAAGGCAACAAGGAACACACGAGACATT 894
Query 902 GCACCGTGACATGATTGTTGGATTTGGAACTTGGGAGTTCGATCCAATGGAGCTCGAGAA 961
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 895 GCACCGTGACATGATTGTTGGATTTGGAACTTGGGAATTCGATCCGATGGAGCTCGAGAA 954
Query 962 TCTGTTCCCGAACAATGAAGGATCAGTGCACTTGTGGCAGGGAGATGATGATGTGCTTGT 1021
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 955 TCTGTTCCCGAACAATGAGGGATCAGTGCACTTGTGGCAGGGAGATGATGATGTACTTGT 1014
Query 1022 CCCTGTGACTCTGCAACGTTACATTGCGA-AGAAGCTGCCATGGATCCATTACCATGAGA 1080
||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct 1015 CCCTGTGACTCTGCAACGTTACATTGC-ACAGAAGCTTCCATGGATCCATTACCATGAGA 1073
Query 1081 TTCCTGGAGCAGGGCATTTGTTCCCGTTTGCTCCAGGTATGGTTAATAACATTGTTAAAA 1140
|||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1074 TTCCTGGAGCCGGACATTTGTTCCCATTTGCTCCAGGTATGGTTAATAACATCGTTAAAA 1133
Query 1141 CGCTCTTAACCAATGATGGAGTGAAGAAGTAAACGATG-TCTTCTCTCTCAAAAAGTTGG 1199
| |||||||||||||||||||||||||| ||||| | ||||||||||||||||| | |
Sbjct 1134 CTCTCTTAACCAATGATGGAGTGAAGAACTAAACTCTTATCTTCTCTCTCAAAAAGATAG 1193
Query 1200 CTAGTTT 1206
|||||||
Sbjct 1194 CTAGTTT 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52793079570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5