BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G36295.1

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482601 jgi|Araly1|482601|fgenesh2_kg.4__1661__AT2G36295.1         477    4e-134


> Ahg482601 jgi|Araly1|482601|fgenesh2_kg.4__1661__AT2G36295.1
Length=460

 Score =  477 bits (258),  Expect = 4e-134
 Identities = 349/391 (89%), Gaps = 14/391 (4%)
 Strand=Plus/Plus

Query  1    AAGGACTCTTAAACCGGAAATTATTTCAAAATCAACAATGACACGTTGTGTTGGTTTGGT  60
            ||||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct  1    AAGGATTCTTAAAACGAAAATTATTTCAGAATCAACAATGACACGTTGTGTTGGTTTGGT  60

Query  61   TAACCGTGGAACAGAAGAAGAGGAGAAACAAGAAGCAAACGAACCTGAACACGATGGCGA  120
            |||||| |||||||| |||||||||||||||||| |   |  |   |||| |||||||||
Sbjct  61   TAACCGGGGAACAGAGGAAGAGGAGAAACAAGAA-C---C--A---GAACGCGATGGCGA  111

Query  121  GGGAAGTAGTGAAGAAGACGGCGAAGATGATCTGTTCGAGATAAACCTGGAGGCCGTCAG  180
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct  112  GGGAAGTAGTGAAGAAGACAGCGAAGATGATCTGTTCGAGATAAACCTGGAGGCCGTTAG  171

Query  181  TGATACGGCCACATCTCCACCGTATGATTGCCAGAGATTACCGGCGAGAACAGGTAGCGT  240
            ||||||| | || ||||||| ||||||||| |||| ||| |||||||||||||| |||||
Sbjct  172  TGATACGACGACGTCTCCACGGTATGATTGGCAGATATTTCCGGCGAGAACAGGCAGCGT  231

Query  241  TTTACTGGCCAACTGTCTATTACCAGCTGCCGAAATCTCTAATGCCGTACCGGCAACATC  300
            |||||||||||||||||||||||||||||| || ||||||  |||||| |||||||||||
Sbjct  232  TTTACTGGCCAACTGTCTATTACCAGCTGCGGATATCTCTTGTGCCGTGCCGGCAACATC  291

Query  301  AAGAGGTTGGAGTGATTTGGTTTGGTCTAGAGGGGTTCTCTATGTTG-ATAATCAAAGAA  359
            |||||||||||||||||||||||||| |||||||||||||||||||| | |||| | |  
Sbjct  292  AAGAGGTTGGAGTGATTTGGTTTGGTTTAGAGGGGTTCTCTATGTTGGA-AATCTAGGTG  350

Query  360  TTGAGAGTAAGAATA-CTTAATCAGATGTAT  389
            |||| |||||||| | ||||||||||| |||
Sbjct  351  TTGAAAGTAAGAA-AGCTTAATCAGAT-TAT  379



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20146150992


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5