BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36300.1
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482602 jgi|Araly1|482602|fgenesh2_kg.4__1662__AT2G36300.1 1328 0.0
Ahg485647 jgi|Araly1|485647|fgenesh2_kg.5__1639__AT3G52760.1 643 0.0
> Ahg482602 jgi|Araly1|482602|fgenesh2_kg.4__1662__AT2G36300.1
Length=1060
Score = 1328 bits (719), Expect = 0.0
Identities = 894/974 (92%), Gaps = 29/974 (3%)
Strand=Plus/Plus
Query 138 AAGAAGATGACGAAGGATTTCGCAGTTCCACCTGTAGTTTTCCCCTCCGGTGGATCTTCA 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGAAGATGACGAAGGATTTCGCAGTTCCACCTGTAGTTTTCCCCTCCGGTGGATCTTCA 60
Query 198 GGCGGTGCTAATGTCCAGCAACGAAGATTCCCAGCGACACCGTTTCAACCGCCGCGTCCC 257
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCCGGTCCTAATGTCCAGCAACGAAGATTCCCAGCGACACCGTTTCAACCGCCGCGTCCT 120
Query 258 TCTTCTTCCGCAATCCCTTTCATGTCATTCGACATTGGATCCGCAGCCGCGTCTTCCGCT 317
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 121 TCTTCTTCCGCAATCCCTTTCATGTCGTTCGACATAGGATCCGCAGCCGCGTCTTCCGCT 180
Query 318 ACACCTGCCGGACCATTCGGCGGGACAATCGCTTCCTCTTCTTCTTTTGGTGGAGGTTCA 377
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 181 ACACCTGCCGGACCATTCGGCGGCACAATCGCTTCCTCTTCGTCTTTTGGTGGAGGTTCA 240
Query 378 GCTTCGTTTGAAGATGAGGAGCCATTACTCGACGAGCTCGGTATCCATCCAGATCAAATC 437
||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 241 GCTTCGTTTGAAGATGAGGAGCCTTTACTTGACGAGCTCGGTATCCATCCGGATCAAATC 300
Query 438 TGGAAGAAGACTAGATCGATTCTCAATCCTTTTCGGATTAACCAAGCTGTTCACAAAGAT 497
|||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||
Sbjct 301 TGGAAGAAGACTAGATCGATTCTCAATCCTTTCCGGATTAATCAAACTGTTCACAAGGAT 360
Query 498 TCAGATCTATCTGGTCCGATCTTTCTGTACCTTGCGCTTTGCTTATTTCAGTTGTTAGCT 557
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 TCAGATCTATCTGGTCCGATCTTTCTATACCTTGCGCTTTGCTTATTTCAGTTGTTAGCT 420
Query 558 GGTAAGATCCAGTTCGGTGTCATACTTGGATGGATCGTCGTCTCCTCTATCTTTCTATAC 617
|||||||||||||||||||| ||||||||||||||||||||||| || || || ||||||
Sbjct 421 GGTAAGATCCAGTTCGGTGTTATACTTGGATGGATCGTCGTCTCGTCCATATTCCTATAC 480
Query 618 GTCGTCTTTAACATGCTTGCTGGTAGAAATGGGAACCTTAATCTCCATACGTGTACGAGC 677
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 481 GTCGTCTTCAACATGCTTGCTGGTAGAAACGGAAACCTTAATCTCCATACGTGTACGAGC 540
Query 678 TTGGTCGGATACTGTTTGCTTCCGGTGGTGGTTTTATCGGCGGTGTCATTGTTCGTTCCC 737
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 TTGGTTGGATACTGTTTGCTTCCGGTGGTGGTTTTATCGGCGGTGTCATTGTTCGTGCCG 600
Query 738 CAGGGAGCAGGGCCGGTTCGGTTTGTGCTTGCGGCTTTGTTTGTGTTGTGGTCCACTAGA 797
|||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 601 CAGGGAGCGGGGCCGGTTCGGTTTGTGCTTGCGGCTGTGTTCGTGTTGTGGTCCACTAGA 660
Query 798 GCCTGCTCTACATTGGTGGTATCTCTTGCTGATGGTGGAGAAGAGCACCGTGGCTTGATC 857
|||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||
Sbjct 661 GCCTGCTCTACATTGGTGGTATCTCTCGCCGATGGTGGAGAAGAGCATCGTGGTTTGATT 720
Query 858 GCGTACGCTTGTTTCTTGATCTATACTCTCTTCTCTCTTCTTGTTATATTTTGATTCCAT 917
||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct 721 GCGTACGCTTGTTTCTTGATCTACACTCTCTTCTCACTTCTCGTTATATTTTGATTGAAT 780
Query 918 ATTGATAGATCGTGAATCACTTCCGATGCTGTGTTAGCAAGTAGCaaaaaaaGGCTGCA- 976
|||||||||||||||| | | | |||||||||||||| |||| ||
Sbjct 781 ATTGATAGATCGTGAA--------G-T--T-----AGCAAGTAGCAAAA---GGCTACAG 821
Query 977 ATATAAGTTCTTTGATGTGAGGTTGAATTGGGTGGGAATAGCACGG-TGTGTAAAGGCTT 1035
|||||||||| |||||||||||||||||||| || | || | || | | | ||
Sbjct 822 ATATAAGTTCGTTGATGTGAGGTTGAATTGGATGCGTGTAA-A-GGCTTTTTT-----TT 874
Query 1036 TTTTGG-ATAAATTTAGAAAGGTGTTTAAGAAATTTGATTCAATGTTTGTATCTGTCACT 1094
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 875 TTTTGGGATAAATTTAGAAAGATGTTTAAGAAATTTGATTCAATGTTTGTATCTGTCACT 934
Query 1095 TGATCTTTAAGGTT 1108
|||||||||||||
Sbjct 935 CGATCTTTAAGGTT 948
> Ahg485647 jgi|Araly1|485647|fgenesh2_kg.5__1639__AT3G52760.1
Length=1056
Score = 643 bits (348), Expect = 0.0
Identities = 658/802 (82%), Gaps = 43/802 (5%)
Strand=Plus/Plus
Query 138 AAGAAGATGACGAAGGATTTCGCAGTTCCACCTGTAGTTTTCCCCT-CCGGTGGATC-T- 194
|||| |||||||||||||||| || ||||||| || ||||| |||| || ||||||| |
Sbjct 94 AAGAGGATGACGAAGGATTTCCCAATTCCACCGGTTGTTTT-CCCTCCCAGTGGATCATC 152
Query 195 TCAGG-CGGTGCTAATGTCCAGCAACGAAGA-TTCCCAGCGACACCGTT-TCAACC-GC- 249
|| || | || ||||| |||||||| || |||||| || | || || ||||| |
Sbjct 153 TCCGGCCACCGCCAATGTTCAGCAACGCCGAGTTCCCACCG-CTCC-TTACCAACCACCA 210
Query 250 CG--CGTCCCTC--TTC-TTCCGCAATCCCTTTCATGTCATTC-GACATTGGATCCGCAG 303
|| | |||| | ||| || |||||||||||||| || || || || |||||| | |
Sbjct 211 CGTTCTTCCCCCGGTTCATT-TTCAATCCCTTTCATGCCA-TCTGAAATCGGATCCTCCG 268
Query 304 CCGCGTCTTCCGCTACACCTGCCGGACCATTCGGCGGGACAATCGCTTCCTCTTCTTCTT 363
||| ||| | || || |||||||||||| |||| |||||| |||| ||||| ||||
Sbjct 269 TCGCCACTT---CAACGCCGGCCGGACCATTCAGCGGAACAATCTCTTCTTCTTCATCTT 325
Query 364 TTGGTGGA-G-GT-TCAGCTTCGTTTGAAGATGAGGAGCCATTACTCGACGAGCTCGGTA 420
| ||| || | || || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 326 TCGGTAGAGGAGTCTCTGCTTCGTTTGAAGATGAGGAGCCTTTACTCGACGAGCTCGGTA 385
Query 421 TCCATCCAGATCAAATCTGGAAGAAGACTAGATCGATTCTCAATCCTTTTC-GGATTAAC 479
||||||||||||||||||||||||| |||||||||||||| ||||| || | |||||||
Sbjct 386 TCCATCCAGATCAAATCTGGAAGAAAACTAGATCGATTCTTAATCCCTT-CAGGATTAAT 444
Query 480 CA-AGCTGTTCACAAAGATTCAGATCTATCTGGTCCGATCTTTCT-GTACCTTGCGCTTT 537
|| | ||||||||||||||||||| || |||||||||||||| || ||||||||||||||
Sbjct 445 CAGA-CTGTTCACAAAGATTCAGACCTCTCTGGTCCGATCTT-CTTGTACCTTGCGCTTT 502
Query 538 GCTTATTTCAG-TTGTTAGCTGGTAAGATCCAGTTCGGTGTCATACTTGGATGGATCGTC 596
||||||||||| || | ||||| ||||| ||||| ||||| |||||||| ||| | ||
Sbjct 503 GCTTATTTCAGCTTCTC-GCTGGGAAGATTCAGTTTGGTGTTATACTTGGTTGGGTTGTT 561
Query 597 GTCTCCTCTATCTTTCTA-TACGTCGTCTTTAACATGCTTGCTGGTAGAAATGGGAACCT 655
|| ||||||||||| || ||| | ||||| || |||||||||||| |||||||||| ||
Sbjct 562 GTTTCCTCTATCTT-CTTGTACATTGTCTTCAATATGCTTGCTGGTCGAAATGGGAATCT 620
Query 656 TAATCTCCATACGTGTACGAGCTTGGTCGGATACTGTTTGCTTCCGGTGGTGGTTTTATC 715
|||||| ||||| ||||||||||| || || |||| | |||||||||| ||| |||| ||
Sbjct 621 TAATCTTCATACTTGTACGAGCTTAGTTGGTTACTCTCTGCTTCCGGTTGTGATTTTGTC 680
Query 716 GGCGGTGTCATTGTTCGTTCCCCAGGGAGCAGGGCCGGTTCGGTTTGTGCT---TGCGGC 772
||||||||| ||||| || || || || || || ||||||||||||||||| ||||||
Sbjct 681 GGCGGTGTCGTTGTTTGTGCCACAAGGTGCTGGTCCGGTTCGGTTTGTGCTCGGTGCGGC 740
Query 773 TTTGTTTGTGTTGTGGTCCACTAGAGCCTGCTCTACAT-TGGTGGTATCTCTTGCTGATG 831
||| ||||||||| | |||||||| || |||| || ||||||| ||||||||||| |
Sbjct 741 ---GTTCGTGTTGTGGGCTACTAGAGCTTGTTCTA-ATCTGGTGGTGTCTCTTGCTGACG 796
Query 832 GTGGAGAAGAGCACCGTGGCTTGATCGCGTACGCTTGTTTCTTGATCTATACTCTCTTCT 891
| ||||||||||||||||| ||||| ||||||||||||| |||||||||||||| || |
Sbjct 797 GAGGAGAAGAGCACCGTGGTTTGATATCGTACGCTTGTTTTTTGATCTATACTCTGTTTT 856
Query 892 CTCTTCTTGTTATATTTTGATT 913
| ||||| ||||| ||||||||
Sbjct 857 CGCTTCTCGTTATCTTTTGATT 878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5