BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36305.1
Length=1187
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482603 jgi|Araly1|482603|fgenesh2_kg.4__1663__AT2G36305.1 1622 0.0
Ahg923368 jgi|Araly1|923368|scaffold_104649.1 134 2e-30
> Ahg482603 jgi|Araly1|482603|fgenesh2_kg.4__1663__AT2G36305.1
Length=1110
Score = 1622 bits (878), Expect = 0.0
Identities = 980/1029 (95%), Gaps = 8/1029 (1%)
Strand=Plus/Plus
Query 1 TAGAAGACCGCCGGACTAAGATTTAACCAGCGGTGACTTCGACACTTATTAGCCGGTATA 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 1 TAGAAGACCGCCGGACTAAGATTCAACCAGCGGTGACTTCGACACTTATTAGCCGGAAGA 60
Query 61 TTTCTTCGCCGGAGCTTCCTCAACGATTATGGCCACCGATGGCGAGAGTATCTCGATGTC 120
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 61 TTTCTTCGCCGGAGCTTCCTCAAAGATTATGGCCATCGATGGCGAGAGTATCTCGATGTC 120
Query 121 GT-TGGCGGTGGCTACCTGCGTCGCGATGGCACTATTCTACGTTTTGATCCTTTACGTTC 179
| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 121 -TGTGGCGGTGGCTGCCTGCGTCGCTATGGCACTATTCTACGTTTTGATCCTTTACGCTC 179
Query 180 CCACCGTGATACTCCGTCTCCCGTCGGCTTCTTCTTACACCGAATTCATGATTCGGCGAT 239
|||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 180 CCACCGTGATTCTCCGTCTCCCGTCGGCTTCTTCTTACTCCGAATTTATGATTCGGCGAT 239
Query 240 TCATCTGCGCGGCCATTTGTACTGTAGCATCTCTCGTCTTCACAGCTTTTATACTTCCGA 299
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 240 TCATCTGCGCGGCCATTTGTACTGTAGTATCTCTCGTCTTCACAGCTTTTATTCTTCCGA 299
Query 300 TAAAAAGCTGGGAGGCCTCT-TATATACTTGGAGTTTATGGCATAAGGAAAGATCATCTG 358
|||||||||||||||||||| | |||||||||||||||||| ||||||| ||||||||||
Sbjct 300 TAAAAAGCTGGGAGGCCTCTGT-TATACTTGGAGTTTATGGTATAAGGACAGATCATCTG 358
Query 359 TGGCAAGGAGTGGTGTATCCTCTTCTATTGACCTCGCTCGTTTATGCTGGGTCTTTGGTG 418
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 359 TGGCAAGGAGTGGTGTATCCTCTTCTATTGACCTCGCTCGTTTATGCCGGCTCTTTGGTC 418
Query 419 TTGAAGTTGTTTACT-CTCCTGGAATCATGGAAGGAAAATGGCGGAGGATGTAGTTCCTT 477
||||||||||| | | ||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 419 TTGAAGTTGTT-ATTGCTCCTGGAATCATTGAAGGAAAATGGTGGAGGATGTAGTTCCTT 477
Query 478 TAATTACATCAGAAGCTTTTTCCAAACAATCCCTGCTTCGGTATTGACAAGTGCTTCTAA 537
| |||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||
Sbjct 478 TGATTACATCAGAAGCTTTTTCCAAACAATTCCTGCTTCGGTACTGACAGGTGCTTCTAA 537
Query 538 TGTTTCCGTTTGGCGCAATTTTATCGTGGCACCAGTAACTGAGGAGCTGGTTTTCCGATC 597
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 538 TGTTTCCATTTGGCGCAATTTTATCGTGGCACCAGTAACTGAGGAGCTTGTTTTCCGAGC 597
Query 598 ATGTATGATACCTTTGCTTCTGTGTGCTGGGTTTAGGATTAACACTGCCATCTTTCTGTG 657
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 598 TTGTATGATACCTTTGCTTCTGTGTGCTGGATTTAGGATTTACACTGCCATCTTTCTCTG 657
Query 658 CCCAGTTCTCTTTAGCTTGGCTCACTTAAACCATTTTAGAGAGATGTACATCAGGCATAA 717
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 658 CCCAGTTCTCTTTAGCTTGGCTCACTTGAACCATTTTAGAGAGATGTACATCAGGCATAA 717
Query 718 CCGCAGCTATCTCCGGGCTTCACTTATTGTTGGTCTTCAGCTTGGCTACACAGTCATTTT 777
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 718 CCGCAGCTATCTCCGGGCTTCACTGATTGTTGGTCTTCAGCTTGGCTACACAGTCATTTT 777
Query 778 TGGTGCATATGCATCGTTTCTCTTCATCAGAACCGGACATCTTGCTGCTCCTTTGTTTGC 837
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TGGTGCATATGCATCGTTCCTCTTCATCAGAACCGGACATCTTGCTGCTCCTTTGTTTGC 837
Query 838 TCATATATTTTGCAACTACATGGGATTGCCTGTGCTATACGCA-AATGGAAAAGGTTTGG 896
||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 838 TCATATATTCTGCAACTACATGGGGTTGCCTGTGCTATACGCCCAA-GGAAAAGGTTTGG 896
Query 897 TGAGTGCAGCGTTCTTAGGCGGTGTGGTTGGGTTCGTCTTACTTCTCTTTCCTTTAACAA 956
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 897 TGAGTGCAGCGTTCTTAGGCGGTGTGGTTGGGTTCGTCTCACTTCTCTTTCCTTTAACAA 956
Query 957 AGCCTCTCATGTACAACGATAGTACCAACGATTGTCCGTGTTGGCTTGGCTATTGTTTGT 1016
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 957 AGCCTCTCATGTACAACGATAGTACCAACAATTGTCCGTGTTGGCTTGGCTATTGCTTGT 1016
Query 1017 GGAATTGAC 1025
|||||||||
Sbjct 1017 GGAATTGAC 1025
Score = 130 bits (70), Expect = 2e-29
Identities = 80/85 (94%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 1073 TTTTGACACAATATTGGAATTATGGTCTTTTACTGCAAGCTAATGTTTCTTGATAGTTTA 1132
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 TTTGGACACAATATTTGAATTATGGTCTTTTACTGCAAGCTAATGTTTCTTGATAGTTTG 1085
Query 1133 TGTAGTTTTTTCCTTGtaaatatat 1157
| |||||||| ||||||||||||||
Sbjct 1086 TCTAGTTTTTACCTTGTAAATATAT 1110
> Ahg923368 jgi|Araly1|923368|scaffold_104649.1
Length=250
Score = 134 bits (72), Expect = 2e-30
Identities = 84/90 (93%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 565 GGCACCAGTAACTGAGGAGCTGGTTTTCCGATCATGTATGATACCTTTGCTTCTGTGTGC 624
||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 92 GGCACCAGTAACTGAGGAGCTGGTTTTCCCAGCTTGTATGATACCTTTGCTTCTGTGTGC 151
Query 625 TGGGTTTAGGATTAACACTGCCATCTTTCT 654
||| ||||||||| ||| ||||||||||||
Sbjct 152 TGGATTTAGGATTTACAGTGCCATCTTTCT 181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44298829554
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5