BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36305.1 Length=1187 Score E Sequences producing significant alignments: (Bits) Value Ahg482603 jgi|Araly1|482603|fgenesh2_kg.4__1663__AT2G36305.1 1622 0.0 Ahg923368 jgi|Araly1|923368|scaffold_104649.1 134 2e-30 > Ahg482603 jgi|Araly1|482603|fgenesh2_kg.4__1663__AT2G36305.1 Length=1110 Score = 1622 bits (878), Expect = 0.0 Identities = 980/1029 (95%), Gaps = 8/1029 (1%) Strand=Plus/Plus Query 1 TAGAAGACCGCCGGACTAAGATTTAACCAGCGGTGACTTCGACACTTATTAGCCGGTATA 60 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | Sbjct 1 TAGAAGACCGCCGGACTAAGATTCAACCAGCGGTGACTTCGACACTTATTAGCCGGAAGA 60 Query 61 TTTCTTCGCCGGAGCTTCCTCAACGATTATGGCCACCGATGGCGAGAGTATCTCGATGTC 120 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 61 TTTCTTCGCCGGAGCTTCCTCAAAGATTATGGCCATCGATGGCGAGAGTATCTCGATGTC 120 Query 121 GT-TGGCGGTGGCTACCTGCGTCGCGATGGCACTATTCTACGTTTTGATCCTTTACGTTC 179 | ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| || Sbjct 121 -TGTGGCGGTGGCTGCCTGCGTCGCTATGGCACTATTCTACGTTTTGATCCTTTACGCTC 179 Query 180 CCACCGTGATACTCCGTCTCCCGTCGGCTTCTTCTTACACCGAATTCATGATTCGGCGAT 239 |||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 180 CCACCGTGATTCTCCGTCTCCCGTCGGCTTCTTCTTACTCCGAATTTATGATTCGGCGAT 239 Query 240 TCATCTGCGCGGCCATTTGTACTGTAGCATCTCTCGTCTTCACAGCTTTTATACTTCCGA 299 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 240 TCATCTGCGCGGCCATTTGTACTGTAGTATCTCTCGTCTTCACAGCTTTTATTCTTCCGA 299 Query 300 TAAAAAGCTGGGAGGCCTCT-TATATACTTGGAGTTTATGGCATAAGGAAAGATCATCTG 358 |||||||||||||||||||| | |||||||||||||||||| ||||||| |||||||||| Sbjct 300 TAAAAAGCTGGGAGGCCTCTGT-TATACTTGGAGTTTATGGTATAAGGACAGATCATCTG 358 Query 359 TGGCAAGGAGTGGTGTATCCTCTTCTATTGACCTCGCTCGTTTATGCTGGGTCTTTGGTG 418 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 359 TGGCAAGGAGTGGTGTATCCTCTTCTATTGACCTCGCTCGTTTATGCCGGCTCTTTGGTC 418 Query 419 TTGAAGTTGTTTACT-CTCCTGGAATCATGGAAGGAAAATGGCGGAGGATGTAGTTCCTT 477 ||||||||||| | | ||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 419 TTGAAGTTGTT-ATTGCTCCTGGAATCATTGAAGGAAAATGGTGGAGGATGTAGTTCCTT 477 Query 478 TAATTACATCAGAAGCTTTTTCCAAACAATCCCTGCTTCGGTATTGACAAGTGCTTCTAA 537 | |||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||| Sbjct 478 TGATTACATCAGAAGCTTTTTCCAAACAATTCCTGCTTCGGTACTGACAGGTGCTTCTAA 537 Query 538 TGTTTCCGTTTGGCGCAATTTTATCGTGGCACCAGTAACTGAGGAGCTGGTTTTCCGATC 597 ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 538 TGTTTCCATTTGGCGCAATTTTATCGTGGCACCAGTAACTGAGGAGCTTGTTTTCCGAGC 597 Query 598 ATGTATGATACCTTTGCTTCTGTGTGCTGGGTTTAGGATTAACACTGCCATCTTTCTGTG 657 ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| || Sbjct 598 TTGTATGATACCTTTGCTTCTGTGTGCTGGATTTAGGATTTACACTGCCATCTTTCTCTG 657 Query 658 CCCAGTTCTCTTTAGCTTGGCTCACTTAAACCATTTTAGAGAGATGTACATCAGGCATAA 717 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 658 CCCAGTTCTCTTTAGCTTGGCTCACTTGAACCATTTTAGAGAGATGTACATCAGGCATAA 717 Query 718 CCGCAGCTATCTCCGGGCTTCACTTATTGTTGGTCTTCAGCTTGGCTACACAGTCATTTT 777 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 718 CCGCAGCTATCTCCGGGCTTCACTGATTGTTGGTCTTCAGCTTGGCTACACAGTCATTTT 777 Query 778 TGGTGCATATGCATCGTTTCTCTTCATCAGAACCGGACATCTTGCTGCTCCTTTGTTTGC 837 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 778 TGGTGCATATGCATCGTTCCTCTTCATCAGAACCGGACATCTTGCTGCTCCTTTGTTTGC 837 Query 838 TCATATATTTTGCAACTACATGGGATTGCCTGTGCTATACGCA-AATGGAAAAGGTTTGG 896 ||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||| Sbjct 838 TCATATATTCTGCAACTACATGGGGTTGCCTGTGCTATACGCCCAA-GGAAAAGGTTTGG 896 Query 897 TGAGTGCAGCGTTCTTAGGCGGTGTGGTTGGGTTCGTCTTACTTCTCTTTCCTTTAACAA 956 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 897 TGAGTGCAGCGTTCTTAGGCGGTGTGGTTGGGTTCGTCTCACTTCTCTTTCCTTTAACAA 956 Query 957 AGCCTCTCATGTACAACGATAGTACCAACGATTGTCCGTGTTGGCTTGGCTATTGTTTGT 1016 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 957 AGCCTCTCATGTACAACGATAGTACCAACAATTGTCCGTGTTGGCTTGGCTATTGCTTGT 1016 Query 1017 GGAATTGAC 1025 ||||||||| Sbjct 1017 GGAATTGAC 1025 Score = 130 bits (70), Expect = 2e-29 Identities = 80/85 (94%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 1073 TTTTGACACAATATTGGAATTATGGTCTTTTACTGCAAGCTAATGTTTCTTGATAGTTTA 1132 ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1026 TTTGGACACAATATTTGAATTATGGTCTTTTACTGCAAGCTAATGTTTCTTGATAGTTTG 1085 Query 1133 TGTAGTTTTTTCCTTGtaaatatat 1157 | |||||||| |||||||||||||| Sbjct 1086 TCTAGTTTTTACCTTGTAAATATAT 1110 > Ahg923368 jgi|Araly1|923368|scaffold_104649.1 Length=250 Score = 134 bits (72), Expect = 2e-30 Identities = 84/90 (93%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 565 GGCACCAGTAACTGAGGAGCTGGTTTTCCGATCATGTATGATACCTTTGCTTCTGTGTGC 624 ||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| Sbjct 92 GGCACCAGTAACTGAGGAGCTGGTTTTCCCAGCTTGTATGATACCTTTGCTTCTGTGTGC 151 Query 625 TGGGTTTAGGATTAACACTGCCATCTTTCT 654 ||| ||||||||| ||| |||||||||||| Sbjct 152 TGGATTTAGGATTTACAGTGCCATCTTTCT 181 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44298829554 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5