BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36307.1
Length=706
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482604 jgi|Araly1|482604|fgenesh2_kg.4__1664__AT2G36307.1 941 0.0
> Ahg482604 jgi|Araly1|482604|fgenesh2_kg.4__1664__AT2G36307.1
Length=668
Score = 941 bits (509), Expect = 0.0
Identities = 615/662 (93%), Gaps = 23/662 (3%)
Strand=Plus/Plus
Query 53 ACTTCATTTCGATTCTAACAAGTTTCTTCTTCCCAAAAGAACCAAGTTTTGTCGAGATGG 112
||||||||||||||||||||||| || ||||||| ||||||||| |||||||||||||||
Sbjct 21 ACTTCATTTCGATTCTAACAAGTCTCGTCTTCCCTAAAGAACCAGGTTTTGTCGAGATGG 80
Query 113 AGAGGCTAAACTCGAAGCTGTACTTGCAAAACTGTTATATAATAAAGGAGAACGAGAGGT 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 AGAGGCTAAACTCGAAGCTGTACTTGCAAAACTGTTATATAATAAAGGAGAACGAGAGGT 140
Query 173 TGAGGAAGAAAGCTCAGATTCTGAACCAAGAGAATCAACAACTTCTCTTCGAACTCAAAC 232
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 141 TGAGGAAGAAAGCTCAGATTCTGAATCAAGAGAATCAACAACTTCTCTTCGAACTCAAAC 200
Query 233 AAAAGCTCTCGAAAACCAAGAACTCTAGTGGATCAAATCAAGGAaacaacaacaacaaca 292
|||||||||| |||||||||||||||| ||||||||||||||| | |||||||
Sbjct 201 AAAAGCTCTCCAAAACCAAGAACTCTAATGGATCAAATCAAGG--------A-AACAACA 251
Query 293 acaacCTCTCTTCATCAAGCTCTGCTTCTGGATAATCCTGAT-G--CAACAAAACTCTTT 349
|||| ||||||||||||||||||||||||||| ||||||||| | ||||||||| ||||
Sbjct 252 ACAATCTCTCTTCATCAAGCTCTGCTTCTGGACAATCCTGATCGAACAACAAAACGCTTT 311
Query 350 AGGACAAGACTTGGATTCGGATAATTAGGAGAACCCATCAtttttattttttattttATT 409
||||||||| ||||||| || |||||| |||||||||||||||||| |||| |||||||
Sbjct 312 AGGACAAGATTTGGATTTGGTTAATTA-GAGAACCCATCATTTTTA--TTTTCTTTTATT 368
Query 410 GGTGTAATGTAAGAAAAATTAGCTAAGTAA-TAG-T-G-GTTAGTGGTAGTA-TTATTAA 464
|||||||||||||||||| ||| |||| || | | | | |||||| || || |||||||
Sbjct 369 GGTGTAATGTAAGAAAAAATAGTTAAG-AAGTGGTTAGTGTTAGTATTATTATTTATTAA 427
Query 465 TTATGGAGTAGTTTTTATATTTTTGTTGGGTTCTTCTAATTAAATTACTACAAAAAGGAC 524
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 428 TTATGGAGTAGTTTTT-TATTTTTGTTGGGTTCTTCTAATTAATTTACTACAAAAAGGAC 486
Query 525 AG-AGTGTTGTATGCTCTCTGGCCTATCTTCTGAGGGATATTTTACTTTTGTTTCCATTT 583
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 AGAAGTGTTGTGTGCTCTCTGGCCTATCTTCTGAGGGATATTTTACTTTTGTTTCCATTT 546
Query 584 ATATGTTAATTAGATTTTCTATTTTGCCTTTTCATGTGGGGTTTGGTTGTTTAGGACATG 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 ATATGTTAATTAGATTTTCTATTTTGCCTTTTCATGTGGGGTTTGGTTGTTTAGGACATG 606
Query 644 GTGGATTCTGGGACTACATTGTACCTTCTGCTCTTCTCTTAAACAACCAGTATCTTTAAA 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 607 CTGGATTCTGGGACTACATTGTACCTTCTGCTCTTCTCTTAAACAACCAGTATCTTTATA 666
Query 704 TT 705
||
Sbjct 667 TT 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25961706477
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5