BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36310.1
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482605 jgi|Araly1|482605|fgenesh2_kg.4__1665__AT2G36310.1 1773 0.0
> Ahg482605 jgi|Araly1|482605|fgenesh2_kg.4__1665__AT2G36310.1
Length=1284
Score = 1773 bits (960), Expect = 0.0
Identities = 1067/1118 (95%), Gaps = 10/1118 (1%)
Strand=Plus/Plus
Query 252 ATGGAGAATTGTAATGGTGGGATCTCAAACGGTGACGTTTTGGGTAAGCATGAGAAGCTC 311
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 169 ATGGAGAATTGTAATGGTGGGATCTCAAACGGTGACGTTTTGGGTAAGCGTGAGAAGCTC 228
Query 312 ATTATCGATACAGACCCAGGAATTGATGATAGCATGGCGATATTGATGGCGTTTCAAACA 371
|||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 229 ATTATCGACACAGACCCAGGAATCGATGATAGCATGGCGATAATGATGGCGTTTCAAACA 288
Query 372 CCGGAGCTGGAGATATTAGGATTAACTACTGTGTTTGGTAATGTTTCTACACAAGATGCT 431
|||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 289 CCGGAGCTGGAGATTTTAGGACTGACTACTGTGTTTGGTAATGTTTCTACACAAGATGCT 348
Query 432 ACTCGCAACGCTTTACTCTTGTGTGAGATTGCTGGCTTCCCTGATGTTCCCGTTGCAGAA 491
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 349 ACTCGCAACGCTTTACTCTTGTGTGAGATTGCTGGCTTCCCTGATGTTCCCGTCGCAGAA 408
Query 492 GGAAGTTCCGAACCTTTAAAGGGTGGAATTCCGCGTGTTGCTGATTTTGTGCATGGTAAA 551
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 409 GGAAGTTCTGAACCTTTAAAGGGTGGAATTCCGCGCGTTGCTGATTTTGTGCATGGTAAA 468
Query 552 AACGGACTAGGAGATGTCTCTCTTCCTCCTCCGAGTAGAAAGAAATCTGAGAAAAGTGCA 611
|| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 469 AATGGCCTAGGAGATGTCTCTCTTCCTCCTCCGAGTAGAAAGAAATGTGAGAAAAGTGCA 528
Query 612 GCTGAGTTTCTAGATGAGAAGGTCGAAGAATATCCGGGTGAAGTCACCATTCTCGCCCTC 671
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 529 GCTGAGTTTCTAGATGAGAAGGTCTCAGAATATCCAGGTGAAGTCACCATTCTCGCCCTC 588
Query 672 GGACCTCTAACCAACCTGGCATTAGCCATCAAACGCGATAGTTCATTTGCGAGCAAGGTG 731
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 589 GGACCTCTAACCAACCTGGCATTAGCCATCAAACGCGATAGTTCATTTGCGAGTAAGGTG 648
Query 732 AAGAAAATTGTTATTCTTGGTGGAGCTTTCTTTTCTTTGGGAAATGTCAATCCTGCAGCT 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 AAGAAAATTGTTATTCTTGGTGGAGCTTTCTTTTCTTTGGGAAATGTCAATCCTGCAGCT 708
Query 792 GAGGCTAATATATATGGTGACCCGGAAGCAGCTGATGTTGTTTTCACATCTGGAGCGGAT 851
|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 709 GAGGCTAATATATATGGTGACCCGGAAGCAGCTGATATCGTGTTCACATCTGGAGCGGAT 768
Query 852 ATCACTGTTGTCGGTATAAACATCACAACCCAACTTAAACTATCAGATGATGACCTCTTG 911
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 ATCACTGTTGTTGGTATAAACATCACAACCCAACTTAAACTATCAGATGATGACCTCTTA 828
Query 912 GAGCTTG-GTAACTGCAAGGGGAAACACTCTAAATTGATAAGCGATATGTGCAAATTTTA 970
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 829 GAGCT-GAGTAACTGCAAGGGGAAACACTCTAAATTGATAAGCGATATGTGCAAATTCTA 887
Query 971 TAGAGATTGGCACGTCAAATCTGATGGTGTTTACGGAGTGTACCTCCATGACCCAGTCAG 1030
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 888 CAGAGATTGGCACGTAAAATCTGATGGTGTCTACGGAGTGTACCTCCATGACCCAGTCAG 947
Query 1031 CTTTGTGGCTGTAGTACGGCCTGATTTATTCACATATAAGAAAGGCGTTGTTCGGGTGGA 1090
|||||||||||||||||| |||||| |||||||||||||||| |||||||||||||| ||
Sbjct 948 CTTTGTGGCTGTAGTACGTCCTGATCTATTCACATATAAGAAGGGCGTTGTTCGGGTAGA 1007
Query 1091 GACTCAAGGGATATGTGTTGGCCACACGCTCATGGATCAAGGCCTCAAGAGATGGAACGG 1150
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1008 AACTCAAGGAATATGCGTTGGCCACACTCTCATGGATCAAGGCCTCAAGAGATGGAACGG 1067
Query 1151 AAGCAATCCGTGGGTGGGATATTCACCGATATCAGTTGCTTGGACGGTTGACGTAGAAGG 1210
||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 1068 AAGCAATCCGTGGGTGGGATATTCACCGATATCGGTTGCATGGACGGTGGACGTAGAAGG 1127
Query 1211 AGTTTTGGAATATGTCAAAGCAAAGCTGATGAAGCCATAAAAGATGAGTTTCAG--A--G 1266
||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1128 AGTGTTGGAATATGTCAAAGCAAAGCTGATGAAGCCATAAAAGATGAGTTTCAGTCACAG 1187
Query 1267 --CACGTTAGAGTGTGAATATTCATTTAAAATGGCATCATCACATTCATCTCTTCTGGTT 1324
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 AACACGTTAGAATGTGAATATTCATTTAAAATGGCATCATCACATTCATCTCTTCTGGTT 1247
Query 1325 CTAACCGGAATCTTATATT-CATCTCTGTATTTGATCT 1361
||||||||||||| | ||| ||||||||||||| ||||
Sbjct 1248 CTAACCGGAATCTCA-ATTTCATCTCTGTATTTTATCT 1284
Score = 167 bits (90), Expect = 2e-40
Identities = 139/160 (87%), Gaps = 14/160 (9%)
Strand=Plus/Plus
Query 58 TAATCCACTTCGATTCTGCTTTTTATATAAAGTTGAGGTTTTTGAGCTATTTTTTCTCCT 117
|||||||||||||||||||||||||||||||||||| |||||| | || |
Sbjct 30 TAATCCACTTCGATTCTGCTTTTTATATAAAGTTGA-GTTTTT---C-------TC-GTT 77
Query 118 AAAGGATTCCGAAAAAAGCTTAGACCTTTTTGATCTGATACGTATCTATAAATCTGGAAA 177
||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 78 AAA-GATTCTGAAAAAAGCTTAGACCTTTCTGATCTGATACGTATCTATAAATCTGGAAA 136
Query 178 GGAGCTGAGAGTTTCAAGGGGTTTTAATTTCGCTG-AGAA 216
|||||||||||||||||||||||||| |||| || ||||
Sbjct 137 AGAGCTGAGAGTTTCAAGGGGTTTTAAATTCGATGGAGAA 176
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1 GGACGACTCAGCAATTCGTCGTCTTCTTT 29
|||||||||||||||||||||||||||||
Sbjct 1 GGACGACTCAGCAATTCGTCGTCTTCTTT 29
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54050057655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5