BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36320.1
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934258 jgi|Araly1|934258|scaffold_402246.1 963 0.0
Ahg887716 jgi|Araly1|887716|Al_scaffold_0278_1 171 2e-41
> Ahg934258 jgi|Araly1|934258|scaffold_402246.1
Length=761
Score = 963 bits (521), Expect = 0.0
Identities = 682/752 (91%), Gaps = 41/752 (5%)
Strand=Plus/Plus
Query 421 AATTATGGCGGAAGAACATCGATGCGAGACGCCTGAAGGTCACCGTCTCTGCGTTAACAA 480
|||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 17 AATTATGGCGGAAGAACATCGATGCGAGACACCGGAAGGTCACCGTCTTTGCGTTAACAA 76
Query 481 CTGCGGTTTCTTCGGAAGCTCAGCGACAATGAATCTATGTTCAAACTGTTACGGCGATCT 540
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 77 TTGCGGTTTCTTCGGAAGCTCAGCGACAATGAATCTTTGTTCAAACTGTTACGGCGATCT 136
Query 541 CTGTCTCAAACAACAACAACAAGCTTCCATGAAATCAACCGTCGAATCATCTCTCTCTCC 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 CTGTCTTAAACAACAACAACAAGCTTCCATGAAATCAACCGTCGAATCATCTCTCTCTCC 196
Query 601 GGTGATCGCACCTGTTCTCGAAAACTACGCGGCGGAGTTAGAGATCCCGACGACGAAGAA 660
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 197 GGTGATCGCACCTGTTCTCGAAAATTACGCGGCGGAATTAGAGATCCCGACGACGAAGAC 256
Query 661 GACAGAGGAGAAAAAACCGATTCAAATTCCGACGGAGCAACCG--T-CTCCGCCGCAACG 717
| ||||||||||| |||||||||| ||||||||||||||| | |||||||||||||
Sbjct 257 G---GAGGAGAAAAAGCCGATTCAAAATCCGACGGAGCAACCTCCTTCTCCGCCGCAACG 313
Query 718 GCCGAATCGATGCACCGTATGTAGGAAACGGGTCGGGTTAACCGGGTTTATGTGTCGGTG 777
|||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 314 GCCGAATCGATGCACCGTGTGTAGGAAACGGGTCGGGTTAACCGGATTTATGTGCCGGTG 373
Query 778 TGGGACGACTTTTTGTGGGAGTCATAGGTATCCGGAGGTTCATGGTTGTACGTTTGATTT 837
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 374 CGGGACGACGTTTTGTGGGAGTCATAGGTATCCGGAGGTTCACGGTTGCACGTTCGATTT 433
Query 838 CAAATCGGCGGGACGTGAAGAGATCGCGAAAGCTAATCCGTTGGTTATTGCGGCGAAGCT 897
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 434 CAAATCGGCGGGACGTGAAGAGATCGCGAAAGCTAATCCGTTGGTTATAGCGGCGAAGCT 493
Query 898 TCAGAAAATATGAATCGGAG---CCGTT-GACCGATTT-CTATCTTT-ACCCTGAGAAAA 951
|||||||||||||||||||| ||||| | | ||| || | || ||| |||||| |
Sbjct 494 TCAGAAAATATGAATCGGAGGAGCCGTTTG---G-TTTGCTC-CGTTGACC-TGAGAAGA 547
Query 952 TTTCGATTGT-CTCGGTGGATCTCAGCCGTTCATTATGTTATTGTATTACGGACACGTGT 1010
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TTTCGAT-GTTCTCGGTGGATCTCAGCCGTTCATTATGTTATTGTATTACGGACACGTGT 606
Query 1011 CGCAAGATTAAGGTTGAGATGGTTTCGT-------------------AACTTTTTAA-TT 1050
| | ||||||||||||||||||||||| |||||||||| ||
Sbjct 607 CACGCGATTAAGGTTGAGATGGTTTCGTTTCGTTTCGTTTCGTCGTGAACTTTTTAAATT 666
Query 1051 ATTTTCTTTGTTTATTTCCGAA-GAAATTAAAGTTTTTATGATTGTGTGGCTTTTGCTTG 1109
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 667 ATTTTCTTTGTTTATTTCCGAAAGAAATTAAAGTTTTTATAATTGTGTGGCTTTTGCTTG 726
Query 1110 TaaaaaaaaaaaGGGTTTCTCTTTGGGAAAAA 1141
|||||||||||||| |||||||||||||||||
Sbjct 727 TAAAAAAAAAAAGGATTTCTCTTTGGGAAAAA 758
> Ahg887716 jgi|Araly1|887716|Al_scaffold_0278_1
Length=345
Score = 171 bits (92), Expect = 2e-41
Identities = 148/175 (85%), Gaps = 4/175 (2%)
Strand=Plus/Plus
Query 425 ATGGCGGAAGAACATCGATG-CGAGACGCCTGAAGGTC-ACCGTCTCTGCGTTAACAACT 482
|||||||||||||||||||| | |||| | ||| | | |||||||||| |||||||||
Sbjct 1 ATGGCGGAAGAACATCGATGTC-AGACATCAGAAAG-CAACCGTCTCTGTGTTAACAACA 58
Query 483 GCGGTTTCTTCGGAAGCTCAGCGACAATGAATCTATGTTCAAACTGTTACGGCGATCTCT 542
| || ||| |||| ||||| || || |||||||| ||||| || || |||||||||||||
Sbjct 59 GTGGCTTCCTCGGCAGCTCCGCCACCATGAATCTCTGTTCTAATTGCTACGGCGATCTCT 118
Query 543 GTCTCAAACAACAACAACAAGCTTCCATGAAATCAACCGTCGAATCATCTCTCTC 597
|||||||||||||||||||| | ||||| ||||| ||||||||||| || |||||
Sbjct 119 GTCTCAAACAACAACAACAATCCTCCATCAAATCCACCGTCGAATCTTCCCTCTC 173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5