BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36325.1
Length=1144
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482606 jgi|Araly1|482606|fgenesh2_kg.4__1666__AT2G36325.1 1629 0.0
> Ahg482606 jgi|Araly1|482606|fgenesh2_kg.4__1666__AT2G36325.1
Length=1113
Score = 1629 bits (882), Expect = 0.0
Identities = 1040/1117 (93%), Gaps = 8/1117 (1%)
Strand=Plus/Plus
Query 1 AACAATTTCAACCATCATGAACATTACTAAACTCACTCCTTGGTTTCTTTTCTCGTGTCT 60
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 AACAATTTCGACCATCATGAACATAACTAAACTCACTCCTTGGTTTCTTTTCTCGTGTCT 60
Query 61 GATTCTTCTATCAGACTACATAAAGGTAAACAGCTCAATTTCTCCATCTAGCGAGCAAAC 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 61 GATTCTTCTATCAGACTACATAAAGGTAAACGGCTCAATTTCTCCATCTAGCGAGCAGAC 120
Query 121 ACAAGAAGATGGCTTTTTTGGTTTCAAACCTACA-AAGTTGTTTGTGTTCGGAGACTCGT 179
|||| |||||||| |||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 121 ACAAAAAGATGGCATTTTTGGTTTCAAACCTA-AGAAGTTGTTTGTGTTCGGAGACTCGT 179
Query 180 ATGCAGACACTGGAAACACACCTTTCCTGATCGTTCCCTCGTGGAGGTTTCCCAATGGAA 239
|||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct 180 ATGCAGACACCGGAAACACACCTGTCCTGATCGCTCCTTCGTGGAGGTTTCCCAATGGAA 239
Query 240 TCACTTTCCCGGGAATA-CCTACCGGGCGGTTTAGT-GATGGTCGTGTTTCCACTGATTA 297
|||||||||||||| | |||||||||||||| | |||||||| || |||||||||||
Sbjct 240 TCACTTTCCCGGGA-TGGCCTACCGGGCGGTTC-GCCGATGGTCGCGTCTCCACTGATTA 297
Query 298 TCTCGCGAAGTATATTGGAGTTAGAACGCCGATCACATACAAATGGGGGAAATACGGACG 357
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 298 TCTCGCGAAGTATGTTGGACTTAGAACGCCGATCACACACAAATGGGGGAAATACGGACG 357
Query 358 ACCGAGACTAGCTGTGAAAAGAGGAATGAATTTCGCATATGGTGGAGCCGGCGCGTTTGA 417
||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 358 ACCTAGACTAGTTGTGAAAAGAGGAATGAATTTCGCATATGGTGGAGCCGGCGTGTTTGA 417
Query 418 GACAATGTTCAAATTAGTTCCTACCGCTAGTGTGCAGATTGATTCCTTTGAACAACTCCT 477
|||||||||||||||| |||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 418 GACAATGTTCAAATTAATTCCTAACGCTAGTGTGCAGATCGATTTCTTTGAACAACTCCT 477
Query 478 CATGAGAAACGTTTATTCACCGGCCGATCTCAACTCTTCCGTCGCTTTCTTTAGCATCAT 537
|| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 478 CAGGAGAAATGTTTATTCACCGGCCGATCTCAACTCCTCCGTCGCTTTCTTTAGCATCGT 537
Query 538 CGGCAATGACTACCTTACTTACGACAGACGTAATGGTTCTGAAGAGGGTCGTTCAGCACT 597
|||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||
Sbjct 538 CGGCAATGACTACCTTACTTACAACAGACGTAATGGTACTGAACAGGGTCGTCCAGCACT 597
Query 598 CACAAGGAAAGTAGTGAAACAGATTTTGTTGGATGTGAAGCGAATTAAGGATTTAGGAGT 657
|| ||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 598 CATAAGGAGAGTAGTGAAACAAATTTTGTTAGATGTGAAGCGAATTAAGGATTTAGGAGT 657
Query 658 AAGAAAGGTGTTAGTGGCTTTATCACCACCGCAGAAATGTTTGCCGAAGCTTGTCACTCC 717
|||||||||||| ||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct 658 AAGAAAGGTGTTGGTGGCTTTATCGCCCCCGCAGAAATGTTTGCCGTTGCTTGTCACTCC 717
Query 718 TAAAGGCTGCGACACCAACGACACCTCGACGTACCTCCACAACAGTCTTCTCCGCAAAGG 777
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 718 TAAAGGCTGCGACACCAACGACACCTCGACGCACCTCCACAACAGTCTTCTCCGCAAAGG 777
Query 778 ACTGATAAAACTAAACGATAAGGAGATTAACAATAATGATAAAAGTTTCATGACGTTAGA 837
||| |||||||||||||||||| ||||||||||| |||||||||||||| | | ||| ||
Sbjct 778 ACTAATAAAACTAAACGATAAGAAGATTAACAATGATGATAAAAGTTTCCTCATGTTTGA 837
Query 838 TCTCTACAATGCCTTTGTGACCATATTCAAGAACAAAGGAGTTTCAGGAGTTTCGACATT 897
||||||||||| ||||| || ||||||||||||||||||||| ||||||||||| |||
Sbjct 838 CCTCTACAATGCTTTTGTTACAATATTCAAGAACAAAGGAGTTCCAGGAGTTTCGGTATT 897
Query 898 TCCGGATCCGTTTAAGGCATGTTGTGCAACAAAACGAGGTACCTTTTGTGGAGATAGAAG 957
|||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |||
Sbjct 898 TCCGGATCCGTTGAAGGCATGTTGTGCTACAAAACGAGGTACCTCTTGTGGAGATATAAG 957
Query 958 CTTGAGTGGTAAAAAGTTGTACACTCTTTGCGATGATCCAAAATCATTCTTCTTTTGGGA 1017
| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 958 CCTGAGTGGTAAAAAGTTGTACAGTCTTTGCGAAGATCCAAAATCATTCTTCTTTTGGGA 1017
Query 1018 CAATGTTCATATCAGTGATCAAGGATGGCGTTCTGTTTTTTCTCTTCTTCTTCCTGATTC 1077
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1018 CAATGTTCATATCACTGATCAAGGATGGCGTTCTGTATTTTCTCTTCTTCTTCCTGATTC 1077
Query 1078 ACAGTTTTAAATCAACTAGAT-CAATATGCAATAATT 1113
|||||||||||||||||| || ||| || ||| ||||
Sbjct 1078 ACAGTTTTAAATCAACTA-ATTCAAAATTCAACAATT 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42659544123
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5