BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36330.1
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482607 jgi|Araly1|482607|fgenesh2_kg.4__1667__AT2G36330.1 1487 0.0
> Ahg482607 jgi|Araly1|482607|fgenesh2_kg.4__1667__AT2G36330.1
Length=1057
Score = 1487 bits (805), Expect = 0.0
Identities = 928/986 (94%), Gaps = 13/986 (1%)
Strand=Plus/Plus
Query 86 TTTGATATTTCCGATGAGATCTCCAGCA-AAGACGATGCCGTCGATGTCACCTTCTTCAG 144
|||||| |||||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 51 TTTGATTTTTCCGATGAGATCTCCA-AAGAAGACGATGCCGTCGATGTCACCATCTTCAA 109
Query 145 TTTCCACGGAGAAATCTCCACCTCCGTCAGATACTTCAATGGCTATAGTAGCTTTCGATA 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 TTTCCACGGAGAAATCTCCACCTCCGTCAGATACTTCAATGGCTATAGTAGCTTTCGATA 169
Query 205 ACTCCACTACTCACTTCTCTTCTTCTCCATCGCCGCCACATTCTCTTGATCATTCCAGTG 264
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 ACCCCACTACTCACTTGTCTTCTTCTCCATCGCCGCCACATTCTCTTGATCATTCCAGTG 229
Query 265 AATCGGAGAAGGAAGATGCGAAAAGTAAACCCGAGAGTAGAAGAAACAAGAATCCTGG-A 323
| |||||||||||||||| |||| ||| |||||||||||| |||||||||||||| ||
Sbjct 230 ATTCGGAGAAGGAAGATGAGAAACGTAGACCCGAGAGTAGGAGAAACAAGAATCC-GGTG 288
Query 324 AAGGTTGAGGAAACTCCATCTCCGATTGTGGTGGTTCATAATCACAATCGCTCTGTGAAA 383
||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 289 AAGATTGAGGAAACTCCATCTCCAATAGTGGTGGTTCATAATCACAATCGCTCTGTGAAA 348
Query 384 GAAGTGGTTCCGACGAGAAAGAGTGCGAGAGTTGGTTCTGGGAGAAGTAGTGGCCAACGA 443
||||||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||||
Sbjct 349 GAAGTGGTTCCAACGAGGAAGACTGCGAGAGTTGGTTCTGGGAGAAGTAGTGGGCAACGA 408
Query 444 TCTGGAGCTGTTTCGGCTATTTTGAGAAGGTCTAGGAGAGAAGAGGTGGTAAAGTTT-TC 502
||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| |
Sbjct 409 TCTGGAGCTGTTTTGGCTATTTTGAGAAGGTCTAGGAGGGAAGAGGTAGTAAAGTTTGT- 467
Query 503 AGCTTTAGGGTTTCGGTTGAGTGAGGTTGTGTTGGCTTTGATATCTTTCTCAATTATGGC 562
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 468 AGCTTTAGGGTTTCGGTTGAGTGAGGTTGTGTTGGCTTTGATTTCGTTCTCAATCATGGC 527
Query 563 TGCTGATAAAACTAAAGGTTGGAGTGGTGATTCTTTCGATCGTTACAAGGAGTACAGGTT 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 TGCTGATAAAACTAAAGGTTGGAGTGGTGATTCTTTCGATCGTTACAAGGAGTACAGGTT 587
Query 623 TTGCCTGTCTGTGAACGTGGTTGCTTTTGTATATTCTAGTTTTCAAGCATGTGACTTAGC 682
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 588 TTGTCTGTCTGTGAACGTGGTTGCTTTTATATATTCTAGTTTTCAAGCATGTGACTTAGC 647
Query 683 GTACCATCTTGTCAAAGAGAAGCATTTGATCAGCCACCACCTTCGACCTCTGTTTGAGTT 742
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 648 ATACCATCTTGTCAAAGAGAAGCACTTGATCAGCCACCACCTTAGACCTCTGTTTGAGTT 707
Query 743 CATTATAGATCAGGTACTTGCATATCTGCTTATGTCTGCCTCAACAGCAGCAGTCACTCG 802
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 708 CATCATAGATCAGGTACTTGCATATCTGCTTATGTGTGCCTCAACAGCAGCAGTCACTCG 767
Query 803 CGTTGATGATTGGGTTTCAAACTGGGGAAAAGACGAGTTCACAGAGATGGCAAGTGCCTC 862
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 768 CGTTGATGATTGGGTTTCAAACTGGGGAAAAGACGATTTCACAGAGATGGCAAGTGCCTC 827
Query 863 GATTGCTATGTCCTTCCTGGCCTTCCTTGCCTTTGCTTTCAGTTCCCTCATTTCAGGCTA 922
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 828 AATTGCTATGTCCTTCTTGGCCTTCCTTGCCTTTGCTTTCAGTTCACTCATTTCAGGTTA 887
Query 923 TAACCTATTTAACCAAGGCTCTCTCTGATCCTCCCACCTTTTT-GTATAGGTCCACACTC 981
||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||
Sbjct 888 TAACCTATTTAACCAAGACTCTCTCTGATCCTCCCAACTTTTTTGTATAGGTCCACACTC 947
Query 982 CTTGTGTGA-TGTATAATAAAAATGATCAA--TATATCT-T-AGCATTGTAATTATTATA 1036
||||||||| ||||||||||||| |||||| ||||||| | ||||||||||||| |||
Sbjct 948 CTTGTGTGAATGTATAATAAAAAAGATCAAAATATATCTCTTAGCATTGTAATTACGATA 1007
Query 1037 CTATTTTTGTAGCCTATATAAAGGTT 1062
||||||||||| |||||| | ||||
Sbjct 1008 TTATTTTTGTAGACTATATGA-GGTT 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41172750360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5