BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36350.1
Length=3142
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482608 jgi|Araly1|482608|fgenesh2_kg.4__1668__AT2G36350.1 5060 0.0
Ahg485660 jgi|Araly1|485660|fgenesh2_kg.5__1652__AT3G52890.2 1341 0.0
> Ahg482608 jgi|Araly1|482608|fgenesh2_kg.4__1668__AT2G36350.1
Length=3125
Score = 5060 bits (2740), Expect = 0.0
Identities = 3004/3132 (96%), Gaps = 15/3132 (0%)
Strand=Plus/Plus
Query 7 TCTCTGTGAGAGAT-TCTCTTCAAGCTCAGGCCTTTAGGCTTTAGGTTTCTTTTGGGAGT 65
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTGTGAGA-TTCTCTCTTCAAGCTCAGGCCTTTAGGCTTTAGGTTTCTTTTGGGAGT 59
Query 66 CTTCTTGAGCTCTGTAATCACTCTCTAGAAGCTTATTTTGCCTCCTAATGTTATTAGGGT 125
|| ||||||||||||||||||||||||||| | |||||||||||||||||||| | ||||
Sbjct 60 CTCCTTGAGCTCTGTAATCACTCTCTAGAA-CCTATTTTGCCTCCTAATGTTAGTGGGGT 118
Query 126 GTTGTACTGGAAT-TATTAGGATGAACCAAGGAAGATGAGTCTCT--CGGTCTTTCAAAA 182
||||||||||||| | ||| ||||| ||||||||||||||||||| |||||||||||||
Sbjct 119 GTTGTACTGGAATCT-TTAAGATGAGCCAAGGAAGATGAGTCTCTCACGGTCTTTCAAAA 177
Query 183 ACCAAGTCTTGTAATGAGGAGCTGTCCACTGTTGTAAAGTAAGTCATTAAGATGGAATCC 242
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 178 ACCAAGTCTTGGAATGAGGAGCTGTCCACTGTTGTAAAGTAAGTCATTAAGATGGGATCA 237
Query 243 TTTGCAGGTTCTTGTGAAATTGTTGAGGAGAAGGATGCGGTAAGGTTAGCCAAACATTCT 302
||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||
Sbjct 238 TTTGCTGGTTCTTGTGAAATTGTTGAGGAGAAGGATGTGGTCAGGTTGGCCAAACATTCT 297
Query 303 AGCAGATATTGTATGTCACCTTTGGGATCAAGTAAAGATATGGAGCAGCGTCCTGCATTG 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 298 AGCAGATATTGTATGTCACCTTTGGGATCAAGTAAAGATATGGAGCAGCGTCCTGCACTC 357
Query 363 AAGTCAGGGTACCAAGGTTCTATGGAGTATGACATTGATCAGCTTTTCCAGTCTATAACT 422
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 358 AAGTCAGGGTACCAAGGTTCTATGGAGTATGATATTGATCAGCTTTTCCAGTCTATAACT 417
Query 423 ATAAAACCATCACCTAGAAGAGTGATGGGCTCTTCTTTCCATCATCTTGAGACGAGCGCA 482
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATAAAACCATCACCCAGACGAGTGATGGGCTCTTCTTTCCATCATCTTGAGACGAGCGCA 477
Query 483 AGTGCTGGTACGAGCAGGAGCACAAGCCCTTCAAATAAAGGCGCTATGAAAAAGCCCTTT 542
||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 478 AGTGCTGGTACTAGCAGGAGCACAAGCCCTTCAAAAAAATGCGCTATGAAAAAGCCCTTT 537
Query 543 CCCATGGGAACCCCTCGATCACCAAGAGTTGGTCCCTCTGATTCAATATCTCTGAAGCAG 602
|||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 538 CCCATGGGTACCCCTCGATCACCAAGAGTTGGCCCCTCTGATTCAATATCACTGAAGCAG 597
Query 603 GCTCTGAGAGATCTTTGCATCTCCAAGGCATCAGAAATGGCTTCCCAGAAACGTTTATCA 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GCTCTGAGAGATCTTTGCATCTCCAAGGCATCAGAAATGGCTTCCCAGAAACGTTTATCA 657
Query 663 AAATCTGCAGCTGCATCTCCGAGGGTTTCTGAAGCAGACAGGATAAAGACTCTTTACAGA 722
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 658 AAATCTGCTGCTGCATCTCCGAGGGTTTCTGAAGCAGACAGGATAAAGAGTCTTTACAGG 717
Query 723 CAAGTTTTGAA-TGAATCTGCTGGCAAGCCTGGGCTTCCTGTGGACAAGGGTAAAAGCTT 781
|||||||| || ||||||| | |||| | |||||||||||||||| ||||||||||||||
Sbjct 718 CAAGTTTT-AAGTGAATCTACCGGCAGGGCTGGGCTTCCTGTGGATAAGGGTAAAAGCTT 776
Query 782 GGTTGAAATATCTTTGACGCCGGTAGTCGATATACCCAGCTCCTCCCAGAGTGTACCTCA 841
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 777 GGTTGAAATATCTTTGACGCCGGTAAACGATATACCCAGCTCCTCCCAGAGTGTACCTCA 836
Query 842 GCGGTATGATGTCCTTGAGACAGAGCCATCTAACTTCATTTCTGAACCATCTCAGGCTGA 901
||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 837 GCGGTTTGATGTCCTTGAGACAGAGCCTTTTAACTTCATTTCTGAACCATCTCAGGCTGA 896
Query 902 AATCCTTCTCCACGTACTTGGAAATGGGTCGGGAATAAAGACAGTGGGATATGGAATGCT 961
||||||||||||||||||||||||| | |||||| |||||||||||||||||| ||||||
Sbjct 897 AATCCTTCTCCACGTACTTGGAAATAGCTCGGGATTAAAGACAGTGGGATATGAAATGCT 956
Query 962 GGAGACTGTATCACTGTGTAAATCCAACAAATCTGGATCTTGTCTCAGTTCTGGCAGTGG 1021
||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GGAGAATGCATCAATGTGTAAATCCAACAAATCTGGATCTTGTCTCAGTTCTGGCAGTGG 1016
Query 1022 AGATTATGAGATAGAGATAGATGAAAATCATACATCTCCTCCTCATATGGTCATTGAAGA 1081
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1017 AGATTATGAGATAGAGATAGATGAAAATCCTACATCTCCTCCTCATGTGGTCATTGAAGA 1076
Query 1082 TCAATTAGTGGAAATCGACAAACATGTTACCTCGCTGCCTTCTTGTTCTGGCAGCAAAGT 1141
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1077 TCAATTGGTGGAAATAGACAAACATGTTACCTCGCTGCCTTCCTGTTCTGGCAGCAAAGT 1136
Query 1142 TGATACTGAAGAGCTAGACAAGAGCATCGTCTCATCAGCTAGAGTGAAAAGTGAGCCAAC 1201
|||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1137 TGATGCTGAAGAGCTAGACAGGAGCATCATCTCATCAGCTAGAGTGAAAAGTGAGCCAAC 1196
Query 1202 AGCTTTGAGCTCAGGGTTAAAAGGAAAGTTGGATAACTTTCCTGGTTCAGGAACAGAGAA 1261
|||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1197 CGCTTTGGGCTCAGGGTTAAAAGGAAAGTTGGATAACTCACCTAGTTCAGGAACAGAGAA 1256
Query 1262 GAGCAAACTGGTAAGCAAGGTGA-CAAGAAATATCCCACGTCCCAAACCGCGGCCGAAGA 1320
|||||||| |||||||||||| | ||||||||||||||||||||||||||||||| ||||
Sbjct 1257 GAGCAAACCGGTAAGCAAGGT-AGCAAGAAATATCCCACGTCCCAAACCGCGGCCAAAGA 1315
Query 1321 AGAAGATATTGCTTAAAAAGAAGCTAAAAATCGTTGTAAATTCTGCTACAAAAATGGTTG 1380
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
Sbjct 1316 AGAAGATATTGCTTAAAAAGAAGCTAAAAATTGTTGTAGCTTCTGCTACAAAAATGGTCG 1375
Query 1381 AGGAAGTCGATACTTCCTTAGAGCCTAGTGCAAGTCAACTTCTGTGCCAGAAG-TGCCAC 1439
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1376 AGGAAGTCGATACTTCCTTAGAGCCTAGTGCAAGTCAACTTCTGTGCCAG-AGATGCCAC 1434
Query 1440 TGTGCGGTAAAGAGCACCAGCACTGAAAACCACCCGCCCTCGAATACTAGTCATACTACT 1499
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||
Sbjct 1435 TGTGCGGTAAAGAGCACCAGCACTGAAAACCACCCACCCTCTAATACTAGTCATAGTACT 1494
Query 1500 GATAAAAATGTCAGTATAGAAGCAGATCAAGAATCACTCGCAAGCCCGCGTCTCATTCGC 1559
||||||| ||| ||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1495 GATAAAAGTGTTAGTATAGAAGCAGATCAAGAATCACTCGCAAACGCGCGTCTCATTCGC 1554
Query 1560 ATTGTGAAGTGTAATAAAGAGGCCAGCAAGGGTTCCTCGGATTCTTGTGAGGTTAGTGAT 1619
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1555 ATTGTGAAGTGTAATAAAGAGGCCAGCAAGGGTTCCTCTGATTCTTGTGAGGTTAGTGAT 1614
Query 1620 AGCGGTGAAGCTGTCATTGTCATGAAACAAGAAGTCTCTCCAAGCAATTATAGTGGAAAA 1679
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1615 AGCGGTGAAGCTGTCATTGTCAAGAAACAAGAAGTCTCTCCAAGCAATTATAGTAGAAAA 1674
Query 1680 GGTGATGCAGATGAACAGATAAGAGCGAATCCAACTTCCAGTGAAAAATTTGATTTCTCG 1739
|||||||| ||||||| |||||||| |||||||| |||||| ||||||||||| ||||||
Sbjct 1675 GGTGATGCGGATGAACTGATAAGAGAGAATCCAAATTCCAGCGAAAAATTTGAATTCTCG 1734
Query 1740 TTGAGCTCAAAGAATAGCCTAGGGGACTATAGCAGCAGCACAAGCATGAGTGAGGAGAGC 1799
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1735 TTGAGCTCAAAGAATAGCCTAGGGGATTATAGCAGCAGCACAAGCATGAGTGAGGAGAGC 1794
Query 1800 AATCTGAGCAGGTTTAGCTGTGGCAATAAACCTCACATGTCTATGGATGTGAGATGGGAA 1859
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 AATCTGAGCAGGATTAGCTGTGGCAATAAACCTCACATGTCTATGGATGTGAGATGGGAA 1854
Query 1860 GCAGTTAAGCATGTAAAGTTGCAGTATGGCTCTTTAGGACTGCGACATTTCAACCTTTTG 1919
||| |||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1855 GCAATTAAGCATGTTAAGTTGCAGTATGGCTCTCTAGGACTCCGACATTTCAACCTTTTG 1914
Query 1920 AAAAAGCTTGGTTGTGGAGATATTGGAACTGTCTATCTTGCTGAGCTGGTTGGTACAAAC 1979
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1915 AAAAAGCTTGGTTGTGGAGATATCGGAACAGTCTATCTTGCTGAGCTGGTTGGTACAAAC 1974
Query 1980 TGCCTGTTTGCCATCAAGGTCATGGACAACGAGTTCTTGGCCCGAAGGAAAAAGACACCA 2039
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 TGCCTGTTTGCCATAAAGGTCATGGACAACGAGTTCTTGGCCCGAAGGAAAAAGACACCA 2034
Query 2040 AGAGCACAGGCAGAACGGGCAATCCTTAAAATGTTGGACCATCCTTTTCTGCCTACCTTG 2099
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 AGGGCACAGGCAGAACGGGCAATCCTTAAAATGTTGGACCATCCTTTTCTGCCTACCTTG 2094
Query 2100 TATGCGCAATTTACTTCAGATAATTTATCGTGTCTGGTGATGGAGTATTGTCCTGGTGGT 2159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2095 TATGCGCAATTTACTTCAGATAATTTATCGTGTCTGGTGATGGAGTATTGTCCTGGTGGT 2154
Query 2160 GATCTTCATGTCCTAAGGCAGAAACAGCTCAGCAGGTGTTTCTCCGAACCCGCAACTAGG 2219
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2155 GATCTTCATGTCCTGAGGCAGAAACAGCTCAGCAGGTGTTTCTCCGAACCCGCAGCTAGG 2214
Query 2220 TTCTATGTAGCAGAAATCCTCCTTGCGCTGGAGTACTTACACATGCTTGGTGTTATATAC 2279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2215 TTCTATGTAGCAGAAATCCTCCTTGCGCTGGAGTACTTACACATGCTTGGTGTTATATAC 2274
Query 2280 CGAGATTTGAAACCAGAGAACATTCTAGTCCGAGAAGATGGTCACATCATGCTTACAGAT 2339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2275 CGAGATTTGAAACCAGAGAACATTCTAGTCCGAGAAGATGGTCACATCATGCTTACAGAT 2334
Query 2340 TTTGACCTCTCACTCAGATGTGCGGTGAACCCGACTCTTCTCAGATCAACTTCTCCACCC 2399
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2335 TTTGACCTCTCACTCAGATGTGCGGTGAACCCTACTCTTCTCAGATCAACTTCTCCACCC 2394
Query 2400 GAGAAAGATCCCGCAAGGATGTCCGGTCCATACAGCACATCGAATTGCATACAACCTCTA 2459
||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||
Sbjct 2395 GAGAAAGATCCCGCAAGGATGTCGGGTCCATACAACACATCCAATTGCATACAACCTCTA 2454
Query 2460 TGTATTGAACCATCATGTCGGGTCCCATGTTTCAGCCCTAGGCTCTTATCAACCCAAGCA 2519
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2455 TGTATTGAACCATCATGTCGAGTCCCATGTTTCAGCCCTAGGCTCTTATCAACCCAAGCT 2514
Query 2520 AGAAACCAAAAACCAAGAAAACCGAAAAGGCCTGATCTTTTGACACAGCAGTTCAGATCA 2579
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2515 AGAAATCAAAAACCAAGAAAACCGAAAAGGCCTGATCTTTTGACACAACAGTTCAGATCA 2574
Query 2580 TTGCCTCAGCTTGTGGCTGAACCAACCGAAGCAAGATCAAATTCGTTTGTGGGAACGCAC 2639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2575 TTGCCTCAGCTTGTGGCTGAACCAACCGAAGCAAGATCAAATTCGTTTGTGGGAACGCAC 2634
Query 2640 GAGTACTTGGCCCCGGAGATCATTAAAGGAGAAGGACATGGTGCTGCAGTAGACTGGTGG 2699
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2635 GAGTACTTGGCCCCAGAGATCATTAAAGGAGAAGGACATGGTGCTGCAGTAGACTGGTGG 2694
Query 2700 ACATTTGGGGTCCTTCTCTATGAGCTTTTGTACGGGAAGACACCTTTCAAAGGTTATGAC 2759
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2695 ACATTCGGGGTCCTTCTCTATGAGCTTTTGTACGGGAAGACACCTTTCAAAGGTTACGAC 2754
Query 2760 AATGAGGAGACACTGTCCAATGTTGTATACCAGAACCTCAAGTTTCCTGATAGCCCGCTC 2819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2755 AATGAGGAGACACTGTCCAATGTTGTATACCAGAACCTCAAGTTTCCTGATAGCCCGCTC 2814
Query 2820 GTGAGCTTCCAGGCAAAGGAGTTGATCAGAAGGCTGCTGGTGAAGGATCCAGAGAGTCGT 2879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2815 GTGAGCTTCCAGGCAAAGGAGTTGATCAGAAGGCTGCTGGTGAAGGATCCAGAGAGTCGT 2874
Query 2880 CTTGGGTCAGAAAAAGGAGCTGCAGAGATCAAAAGACATCCTTTCTTTGAAGGATTGAAT 2939
|| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2875 CTCGGGTCTGAGAAAGGAGCTGCAGAGATCAAAAGACATCCCTTCTTTGAAGGATTGAAT 2934
Query 2940 TGGGCTCTCATCCGCTGCGCCATACCACCTGAGCTGCCAGATATCTATGACAATGGTGCC 2999
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2935 TGGGCTCTCATCCGATGCGCCATACCGCCTGAGCTGCCAGATATCTATGACAATGGTGCC 2994
Query 3000 ACGGAAGCGACTTCTCCTGAGGGGAATAATAGGTATCTTGAATGTAAAGCCATCGGAGAT 3059
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2995 ACGGAAGCGACTTCTCCTGAGGGAAATAATAGGTATCTTGAATGTAAAGCCATCGGAGAT 3054
Query 3060 CATCTTGAGTTCGAGTTGTTTTAGAGGATAGTGAAAGACAATAAGGTCTAAAG-AGACAG 3118
||||| ||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 3055 CATCTCGAGTTCGAGTTGTTTTAGAGGATAGTGAAAGACAATAAGGTCTTA-GCAGACAG 3113
Query 3119 GAAACTTTTCTG 3130
|||||||||||
Sbjct 3114 TAAACTTTTCTG 3125
> Ahg485660 jgi|Araly1|485660|fgenesh2_kg.5__1652__AT3G52890.2
Length=3179
Score = 1341 bits (726), Expect = 0.0
Identities = 1276/1533 (83%), Gaps = 71/1533 (5%)
Strand=Plus/Plus
Query 1593 TCCTC-GGATTCTTGTGAGGTTAGTGATAGCGGTGAAGCTGTCATTGTC---ATGAAACA 1648
||||| || ||||||| | || ||| | ||| |||||||| || ||| ||||||||
Sbjct 1567 TCCTCTGG-TTCTTGTAATGTCAGTCAAAGCTCTGAAGCTGAGATCGTCATAATGAAACA 1625
Query 1649 AGAAGTCT-CTCCAAGCAATTATAGTGGAA-AAGGTG--AT-GCAGATGAACAGATAAGA 1703
||| || | || | |||||| | ||||||| | ||| || | ||| || ||| || |
Sbjct 1626 AGATGTTTCCT-CGAGCAATAACAGTGGAATCA-GTGCAATGGTAGA--AAAAGA-AACA 1680
Query 1704 GCGAATCCAACTTCCAGTGAAAAATTTGATTTCTCGTTGAGCTC-AAAGAATAGCCTAGG 1762
| |||||||||||||||||| ||||| || ||||| ||||| || |||| |||| || ||
Sbjct 1681 GAGAATCCAACTTCCAGTGAGAAATTCGAGTTCTCTTTGAGTTCAAAAG-ATAGTCTTGG 1739
Query 1763 GGACTATAGCAGCAGCACAAGCATGAGTGAGGAGAGCAATCTGAGCAGGTTTAGCTGTGG 1822
||| |||||||| ||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1740 GGATTATAGCAGGAGCACAAGCATGAGTGAGGAGAGTAATCTGAGTAGATTTAGCTGTGG 1799
Query 1823 CAATAAACCTCACATGTCTATGGATGTGAGATGGGAAGCAGTTAAGCATGT-AAAGTTGC 1881
||||| ||||||||||| ||||||||||||||||||||| |||||||||| || ||| |
Sbjct 1800 GAATAAGCCTCACATGTCGATGGATGTGAGATGGGAAGCAATTAAGCATGTCAAGGTT-C 1858
Query 1882 AGTATGGCTCTTTAGGACTGCGACATTTCAACCTTTTGAAAAAGCTTGGTTGTGGAGATA 1941
| || |||||||| || | ||||| |||||||||||||| |||||||||||||||||||
Sbjct 1859 AATACGGCTCTTTGGGTTTACGACACTTCAACCTTTTGAAGAAGCTTGGTTGTGGAGATA 1918
Query 1942 TTGGAACTGTCTATCTTGCTGAGCTGGTTGGTACAAACTGCCTGTTTGCCATCAAGGTCA 2001
| ||||| |||||||| ||||||||| ||||||||||||| |||||||||| ||||| |
Sbjct 1919 TAGGAACAGTCTATCTCGCTGAGCTGATTGGTACAAACTGTTTGTTTGCCATAAAGGTTA 1978
Query 2002 TGGACAACGAGTTCTTGGCCCGAAGGAAAAAGACACCAAGAGCACAGGCAGAACGGGCAA 2061
||||||||||||||||||| ||||||||||| | || | ||||| |||||| | | ||
Sbjct 1979 TGGACAACGAGTTCTTGGCGAGAAGGAAAAAGTCTCCGCGGGCACAAGCAGAAAGAGAAA 2038
Query 2062 TCCTTAAAATGTTGGACCATCCTTTTCTGCCTACCTTGTATGCGCAATTTACTTCAGATA 2121
| |||||||||||||||||||||||||| ||||| || || || ||||||||||| ||||
Sbjct 2039 TACTTAAAATGTTGGACCATCCTTTTCTTCCTACATTATACGCCCAATTTACTTCGGATA 2098
Query 2122 ATTTATCGTGTCTGGTGATGGAGTATTGTCCTGGTGGTGATCTTCATGTCCTAAGGCAGA 2181
|||| || ||||| || ||||| ||||||||||| || |||||||||||||| |||||||
Sbjct 2099 ATTTGTCTTGTCTAGTCATGGAATATTGTCCTGGAGGAGATCTTCATGTCCTCAGGCAGA 2158
Query 2182 AACAGCTCA-GCAGGTGTTTCTCC-GAACCCGCAACTAGGTTCTATGTAGCAGAAATCCT 2239
| ||||| | || |||||||| || ||||| ||| | || |||||||| || ||||| ||
Sbjct 2159 AGCAGCT-AGGCCGGTGTTTC-CCTGAACCTGCAGCAAGATTCTATGTTGCCGAAATTCT 2216
Query 2240 CCTTGCGCTGGAGTACTTACACATGCTTGGTGTTATATACCGAGATTTGAAACCAGAGAA 2299
|||||| ||||||||||||||||||||||| | |||||||||||| ||||||| || ||
Sbjct 2217 CCTTGCATTGGAGTACTTACACATGCTTGGTATCATATACCGAGATCTGAAACCGGAAAA 2276
Query 2300 CATTCTAGTCCGAGAAGATGGTCACATCATGCTTACAGATTTTGACCTCTCACTCAGATG 2359
|||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||| | ||
Sbjct 2277 CATTCTTGTCCGCGAAGATGGACACATTATGCTTACGGATTTTGACCTCTCACTCCGTTG 2336
Query 2360 TGCGGTGAACCCGACTCTTCTCAGATC-AACTTCTCCACCCGAG-AAAGATCCCGCAAGG 2417
||| |||||||||||||||||||| || ||| |||||||| | | |||||||||||||||
Sbjct 2337 TGCAGTGAACCCGACTCTTCTCAGGTCAAAC-TCTCCACCTG-GTAAAGATCCCGCAAGG 2394
Query 2418 ATGTCCGGTCCATACAGCACATCGAATTGCATACAACC--TCTATGT-ATTGAACCATCA 2474
|| || |||||||||| |||||| || ||||||||||| ||| | | || ||||||||
Sbjct 2395 ATTTCAGGTCCATACAACACATCCAACTGCATACAACCGTTCTGTATCATCGAACCATCT 2454
Query 2475 TGTCGGGTCCCATGTTTCAGCCCTAGGCTCTTATCAACCCAAGCAAGAAACCAAAAACCA 2534
|| | ||| | ||||||||||||||||||| |||| |||| | || | ||
Sbjct 2455 TGCCAGGTTTCGTGTTTCAGCCCTAGGCTCTCCTCAAACCAA-C----AA-C---AAGGT 2505
Query 2535 AGAAAACCGAAAAG-GCCTGATC-T-TTT-G---A--C-ACAGCAGTT---CAGATCATT 2581
|||||||||||||| | ||||| | ||| | | | ||| || || ||||||||
Sbjct 2506 AGAAAACCGAAAAGAG-GTGATCATCTTTCGAAAACCCAACAACACTTGAATAGATCATT 2564
Query 2582 GCCTCAGCTTGTGGCTGAACCAACCGAAGCAAGATCAAATTCGTTTGTGGGAACGCACGA 2641
||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 2565 GCCTCAGCTCGTGGCTGAACCAACCGAAGCAAGATCCAATTCCTTTGTGGGAACACACGA 2624
Query 2642 GTACTTGGCCCCGGAGATCATTAAAGGAGAAGGACATGGTGCTGCAGTAGACTGGTGGAC 2701
|||| | || || |||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 2625 GTACCTAGCTCCAGAGATCATCAAAGGAGAAGGACATGGTGCTGCGGTTGACTGGTGGAC 2684
Query 2702 ATTT-GGGGTCCTTCTCTATGAGCTTTTGTACGGGAAGACACCTTTCAAAGGTTATGACA 2760
||| ||||| || || || |||||||| |||||||| ||||||||||||||||| |||
Sbjct 2685 -TTTCGGGGTTCTCCTTTACGAGCTTTTATACGGGAAAACACCTTTCAAAGGTTACAACA 2743
Query 2761 ATGAGGAGACACTGTCCAATGTTGTATACCAGAACCTCAAGTTTCCTGATAGCCCGCTCG 2820
|||| ||||| || |||||||||| | ||||||||||||||||| ||||||||||| |
Sbjct 2744 ATGACGAGACTTTGGCCAATGTTGTGTTGCAGAACCTCAAGTTTCCCGATAGCCCGCTTG 2803
Query 2821 TGAGCTTCCAGGCAAAGGAGTTGATCAGAAGGCTGCTGGTGAAGGATCCAGAGAGTC-GT 2879
|||||||||||||||| || ||||||||| |||| |||| ||||| ||||||| | |
Sbjct 2804 TGAGCTTCCAGGCAAAAGACTTGATCAGAGGGCTTTTGGTTAAGGAACCAGAGA-ACAGG 2862
Query 2880 CTTGGGTCAGAAAAAGGAGCTGCAGAGATCAAAAGACATCCTTTCTTTGAAGGATTGAAT 2939
|| |||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 2863 CTCGGGTCAGAGAAAGGATCTGTAGAGATCAAAAGACATCCTTTCTTTGAAGGATTGAAT 2922
Query 2940 TGGGCTCTCATCCGCTGCGCCATACCACCTGAGCTGCCAGATATCTATGACAATGGTGCC 2999
|||||||| ||||| ||||| ||||| |||||||| || ||| ||||||| ||||||
Sbjct 2923 TGGGCTCTGATCCGGTGCGCAATACCGCCTGAGCTACCGGATTTCTATGAGTATGGTGGT 2982
Query 3000 --AC-GGA------AGCG-ACTTCTCCTG-AGGG-G-AATAATAGGTATCTTGAATGTAA 3046
|| ||| |||| | ||| || | ||| | |||||||||||||||||||||||
Sbjct 2983 GGACCGGAGGGGGCAGCGGA-TTCGCCAGGAGGCAGTAATAATAGGTATCTTGAATGTAA 3041
Query 3047 AGCCATCGGAGATCATCTTGAGTTCGAGTTGTT 3079
|||||| || |||||||||||||||||||||||
Sbjct 3042 AGCCATAGGCGATCATCTTGAGTTCGAGTTGTT 3074
Score = 387 bits (209), Expect = 4e-106
Identities = 876/1174 (75%), Gaps = 142/1174 (12%)
Strand=Plus/Plus
Query 378 GGTTCTATGGAGTATGACATTGATCAGCTTTTCCAGTCTATAACTATAAAACCATCACCT 437
|||||| | || |||||||||||| ||||||| |||||||| || | ||||||||| |
Sbjct 412 GGTTCTCTTGAATATGACATTGATAAGCTTTTTCAGTCTATTTCTGTTAAACCATCAAC- 470
Query 438 AGAAGAG-TGATGGGCTCTTCTTTCCATCATCTTGAGACGAGCGCAAGTGCTGGTACGAG 496
| || | ||||| | |||||||||||| ||| |||||||||||| ||||| ||| | ||
Sbjct 471 -G-AG-GTTGATGAGTTCTTCTTTCCATAATCATGAGACGAGCGCGAGTGCCGGTCCAAG 527
Query 497 CAGGAGC-ACAAGCCCTTC-AA-ATAAAGGC-GCTATGAAAAAGCCCTTTCCCATGGGAA 552
||||| | ||||||||||| || | || || | |||||||| ||| ||| |
Sbjct 528 CAGGA-CTACAAGCCCTTCGAAGAGAATTGCTTCCATGAAAAA-------ACCA-GGG-A 577
Query 553 CCCCTCGATCACCAAGA---GTTGGTCCCTCTGATTCAATATCTCTGAAGCAGGCTCTGA 609
| |||| ||| || ||| ||||||| |||||||||| | ||| ||||||||||||| |
Sbjct 578 CACCTCAATCGCCTAGATTTGTTGGTCTCTCTGATTCAGTTTCTTTGAAGCAGGCTCTTA 637
Query 610 GAGATCTTTGCATCTCCAAGGCATCAGAAATGGCTTCCCAGAAACGTTTATCAAAATCTG 669
| |||| |||||| |||||||| |||||||||||| | |||||||| || || |||||||
Sbjct 638 GGGATCGTTGCATTTCCAAGGCGTCAGAAATGGCTGCTCAGAAACGGTTGTCGAAATCTG 697
Query 670 CAGCTGCATCTCCGAGGGTTTCTGAAGCAGACAGGATAAAGACTCTT-TACAGA-CAAGT 727
| ||||||||||||||||| || ||||| |||||||| |||| | || || | | |||||
Sbjct 698 CTGCTGCATCTCCGAGGGTCTCAGAAGCTGACAGGATTAAGAGT-TTGTATA-ACCAAGT 755
Query 728 TTTGAATGAATCTGCT---GGCAAGCCTGGGC---TTCCTGTGGACAAGGGT-AA--AAG 778
|| |||||||||| || |||| | |||||| ||||||||||||||||| || |||
Sbjct 756 TTCGAATGAATCTACTAGCGGCAGGTCTGGGCTTGTTCCTGTGGACAAGGGTAAAGGAAG 815
Query 779 CTTGGTTGAAATATCTTTGACGCCGGTAGTCGATATACCCAGCTCCTCCCAGAGTGTACC 838
|||||||| ||| ||||| ||| ||| | ||| ||| ||||| || |||| || ||
Sbjct 816 TTTGGTTGAGATACCTTTGTTGCCCGTAAACAATAAACCAAGCTCTTCTAAGAGCGTGCC 875
Query 839 TCAGCGGTATGATGTCCTTGAGACAGAGCCA-TCTAACTTCATTTCTGAACCATCTCAGG 897
||||| | || || || |||| || |||||| ||||||||| |||||||| |
Sbjct 876 TCAGC-----G--GT--TT--GA-AGAG-CATTCTAACCCCATTTCTGAGCCATCTCAAG 922
Query 898 CTGAAATCCTTCTCCACGTACTTGGA-AATGG-GTCGGGAATAAAGACAGTGGGATATGG 955
||| || || | | | || | || || || |||||| || || | ||| | |
Sbjct 923 CTGGAA-CC-AGT-TTGGGA-TT--ACAA-GGAGTTGGGAATCAA-AC-GCGGG--A--G 969
Query 956 AATGCTGGAGACTGTATCACTGTGTAAATCCAACAAATCTGGATCTTGTCTCAGTTCTGG 1015
|| | || ||| | || |||||||||||||||||| |||||||| ||||||||
Sbjct 970 -AT--T-AAG-CTG--T---TGCATAAATCCAACAAATCTGGGTCTTGTCTTAGTTCTGG 1019
Query 1016 CAGTGGAGATTATGAGATAGAGATAGATGAAAATCATACATCT-CCT-CCTCATATG-GT 1072
|||||||||||||||||||||| ||||||||||| | | | | ||| || | |||| ||
Sbjct 1020 CAGTGGAGATTATGAGATAGAGTTAGATGAAAATGTTGCGT-TGCCTTCCACTTATGCGT 1078
Query 1073 CA-TTGAAGATCAAT-T-AGTGGAAATCGACAAACATGTTACCTCGCTGCCTTCTTGTTC 1129
||||||| | || | | | ||||| ||||||||||||||||| ||||||||| |||
Sbjct 1079 TTGTTGAAGA-CGATGTGA-TAGAAATAGACAAACATGTTACCTCACTGCCTTCTCATTC 1136
Query 1130 TGGCA-GCAAAGTTGATACTGAAGAGCTAGACAAGAGCATCGTCTCATCAGCTAGAGTGA 1188
| ||| | ||||| || | || || | | |||||| | | || | | |
Sbjct 1137 TAGCAAG-AAAGT-GA-A-TGC-GA-C--G----GAGCAT-G----A-CA---A-A---A 1171
Query 1189 AAAGTGAGC-CAACAGCTTT-GAGCTCAGGGTTA-AAAGGAAAGTTGGATAACTTT-CCT 1244
| | | | || | ||||| || ||||| | | ||||| ||||||||| | | |||
Sbjct 1172 ATATTCT-CTCATCTGCTTTAGA-CTCAGAGC-AGAAAGGGAAGTTGGATGA-TGCACCT 1227
Query 1245 GGTTCAGGAACAGAGAAGAGCAAA-CTGGTAAGCAAGGTGACAAGAAAT-ATCCCACGTC 1302
||||||| ||||||||| ||||| | |||| |||| || ||||||| | || |||||||
Sbjct 1228 AGTTCAGGTACAGAGAAGTGCAAAAC-GGTACGCAAAGTAACAAGAA-TGATTCCACGTC 1285
Query 1303 CCAAACCGCGGCCGAAGAAGAAGATATTGCTTAAAAAGAAGCTAAAAATCGTTGTAAATT 1362
|||||| | | ||| |||||||| |||||||| ||||| ||||||||| || ||
Sbjct 1286 CCAAACAAC--C-GAAAAAGAAGATTTTGCTTAAGAAGAAATTAAAAATCGGGGTGGTTT 1342
Query 1363 CTGC---T-AC--AA-AAATG--GTTGAGGAAG-TCGATACTTCCTTAGAGCCTAGTGCA 1412
| || | || || ||| | | ||| ||| | | | |||||||||| |||||||
Sbjct 1343 CAGCAACTTACCCAACAAAAGACGATGAAGAACAT-GTTCCTTCCTTAGATTCTAGTGCC 1401
Query 1413 -AGTCAACTTCTGTGCCAGA-AGTGCCACTGTGCGGTAAAGAGCACCAGCACTGAAAACC 1470
| ||||||||| ||||||| | || |||||| || | ||||||||||||| ||| ||||
Sbjct 1402 CA-TCAACTTCTCTGCCAGAGA-TGTCACTGTTCGTTGAAGAGCACCAGCATTGATAACC 1459
Query 1471 ACCCGCCCTCG-A-A-TACTAGTCATACTACTGA 1501
|||| |||||| | | ||||||||||| | ||||
Sbjct 1460 ACCCACCCTCGTATACTACTAGTCATAATCCTGA 1493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118689203420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5