BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36355.1
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482609 jgi|Araly1|482609|fgenesh2_kg.4__1669__AT2G36355.1 1029 0.0
> Ahg482609 jgi|Araly1|482609|fgenesh2_kg.4__1669__AT2G36355.1
Length=699
Score = 1029 bits (557), Expect = 0.0
Identities = 655/700 (94%), Gaps = 15/700 (2%)
Strand=Plus/Plus
Query 9 ACTGAAAGCAGATAAATAGAGTTTAAGTGTTTGGAGCAGAG--A-AA-CCGAAACGAACA 64
||||||||||||||||||||||||||||||||||||||||| | || || ||| |||||
Sbjct 3 ACTGAAAGCAGATAAATAGAGTTTAAGTGTTTGGAGCAGAGAAATAATCC-AAAGGAACA 61
Query 65 AACAAGAACATGAACAGTACCAACTCAGGAGCTACAACTTCGACTAAAAGCAAGATACCA 124
|| ||||||||||| || |||||||||||||||||| ||||||| |||||||||||||||
Sbjct 62 AAGAAGAACATGAATAGCACCAACTCAGGAGCTACAGCTTCGACCAAAAGCAAGATACCA 121
Query 125 ATGGAGgagaaccaagaagaagagatatggcgaaactttcaagcccgagaagaagagatc 184
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 122 ATGGATGAGAACCAAGAAGAAGAGATATGGCGAAAGTTTCAAGCCCGAGAAGAAGAGATC 181
Query 185 gagagaaagaagaTGGCGGTTAAGGACAAGATTCAACAGCGACTTGGGTTTGCAGAGGAA 244
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 182 GAGAGAAAGAAGATGGCAGTTAAGGACAAGATTCAACAGCGACTTGGGTTTGCAGAAGAA 241
Query 245 GCCACAAGAAGCTTGACACAGACATTGGAAGGGCTAGAGATCATGGGAGATCCAATGAGG 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 GCCACAAGAAGCTTGACACAGACATTGGAAGGGCTAGAGATCATGGGAGATCCAATGAGG 301
Query 305 AAGGAAGTGGGGATGGTAAGAAAGAAAATCGAGATGGCAAATCGAGAAATCAAATCTTTG 364
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 302 AAGGAAGTGGGGATGGTAAGAAAGAAAATCGAGATGGCAAATAGAGAAATCAAATCTTTG 361
Query 365 TCTCAGAGCTGCCAGAAGAAGGAGAGGGAATACAAAGAGATACATGAGGCTTTCGACGAA 424
||||||||||||||||||||||||| ||||||||||||||| || || || |||||||||
Sbjct 362 TCTCAGAGCTGCCAGAAGAAGGAGAAGGAATACAAAGAGATCCAGGAAGCATTCGACGAA 421
Query 425 AAGAACAAAGAGAAAGCACACCTTGTTTCAATCTTAATGGAGCTACTAGCTGAAAGTGAA 484
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 422 AAGAACAAAGAGAAAGCTCACCTTGTTTCAATCTTAATGGAGCTACTGGCTGAAAGTGAA 481
Query 485 AGAGTAAGGGTGAAGAAGCTGGAAGAGATCAACAAGACTATTGGGTCCTTGCGATAATCA 544
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 482 AGAGTAAGGGTGAAGAAGCTGGAAGATATCAACAAGACTGTTGGGTCCTTGCGATAATCA 541
Query 545 ATTCTACCTTTTACATGGGAACT-GTTTGA--G--G---TTTTGGATCATTTATGGATTA 596
||||||||||||||||||||||| |||||| | | |||||||||||||||||||||
Sbjct 542 ATTCTACCTTTTACATGGGAACTTGTTTGACTGTTGAGGTTTTGGATCATTTATGGATTA 601
Query 597 AAGTTCCTCTACTGAAGTGTGAGAAAAGGTGTAAAAGAATGTAATGGAAAAACGATTTGC 656
|| ||||| || | ||||| |||||| |||||||||||||||||||||||| | |||||
Sbjct 602 AAATTCCTTTATTAAAGTG--AGAAAATGTGTAAAAGAATGTAATGGAAAAAAGGTTTGC 659
Query 657 CTCAGGGATTTAAGAAATTCATACCTAAAGATATTTTTGT 696
||||||| |||||||||||||||||||||||| ||||||
Sbjct 660 CTCAGGGCTTTAAGAAATTCATACCTAAAGATGGTTTTGT 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25580477307
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5