BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36355.1 Length=696 Score E Sequences producing significant alignments: (Bits) Value Ahg482609 jgi|Araly1|482609|fgenesh2_kg.4__1669__AT2G36355.1 1029 0.0 > Ahg482609 jgi|Araly1|482609|fgenesh2_kg.4__1669__AT2G36355.1 Length=699 Score = 1029 bits (557), Expect = 0.0 Identities = 655/700 (94%), Gaps = 15/700 (2%) Strand=Plus/Plus Query 9 ACTGAAAGCAGATAAATAGAGTTTAAGTGTTTGGAGCAGAG--A-AA-CCGAAACGAACA 64 ||||||||||||||||||||||||||||||||||||||||| | || || ||| ||||| Sbjct 3 ACTGAAAGCAGATAAATAGAGTTTAAGTGTTTGGAGCAGAGAAATAATCC-AAAGGAACA 61 Query 65 AACAAGAACATGAACAGTACCAACTCAGGAGCTACAACTTCGACTAAAAGCAAGATACCA 124 || ||||||||||| || |||||||||||||||||| ||||||| ||||||||||||||| Sbjct 62 AAGAAGAACATGAATAGCACCAACTCAGGAGCTACAGCTTCGACCAAAAGCAAGATACCA 121 Query 125 ATGGAGgagaaccaagaagaagagatatggcgaaactttcaagcccgagaagaagagatc 184 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 122 ATGGATGAGAACCAAGAAGAAGAGATATGGCGAAAGTTTCAAGCCCGAGAAGAAGAGATC 181 Query 185 gagagaaagaagaTGGCGGTTAAGGACAAGATTCAACAGCGACTTGGGTTTGCAGAGGAA 244 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 182 GAGAGAAAGAAGATGGCAGTTAAGGACAAGATTCAACAGCGACTTGGGTTTGCAGAAGAA 241 Query 245 GCCACAAGAAGCTTGACACAGACATTGGAAGGGCTAGAGATCATGGGAGATCCAATGAGG 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 242 GCCACAAGAAGCTTGACACAGACATTGGAAGGGCTAGAGATCATGGGAGATCCAATGAGG 301 Query 305 AAGGAAGTGGGGATGGTAAGAAAGAAAATCGAGATGGCAAATCGAGAAATCAAATCTTTG 364 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 302 AAGGAAGTGGGGATGGTAAGAAAGAAAATCGAGATGGCAAATAGAGAAATCAAATCTTTG 361 Query 365 TCTCAGAGCTGCCAGAAGAAGGAGAGGGAATACAAAGAGATACATGAGGCTTTCGACGAA 424 ||||||||||||||||||||||||| ||||||||||||||| || || || ||||||||| Sbjct 362 TCTCAGAGCTGCCAGAAGAAGGAGAAGGAATACAAAGAGATCCAGGAAGCATTCGACGAA 421 Query 425 AAGAACAAAGAGAAAGCACACCTTGTTTCAATCTTAATGGAGCTACTAGCTGAAAGTGAA 484 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 422 AAGAACAAAGAGAAAGCTCACCTTGTTTCAATCTTAATGGAGCTACTGGCTGAAAGTGAA 481 Query 485 AGAGTAAGGGTGAAGAAGCTGGAAGAGATCAACAAGACTATTGGGTCCTTGCGATAATCA 544 |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 482 AGAGTAAGGGTGAAGAAGCTGGAAGATATCAACAAGACTGTTGGGTCCTTGCGATAATCA 541 Query 545 ATTCTACCTTTTACATGGGAACT-GTTTGA--G--G---TTTTGGATCATTTATGGATTA 596 ||||||||||||||||||||||| |||||| | | ||||||||||||||||||||| Sbjct 542 ATTCTACCTTTTACATGGGAACTTGTTTGACTGTTGAGGTTTTGGATCATTTATGGATTA 601 Query 597 AAGTTCCTCTACTGAAGTGTGAGAAAAGGTGTAAAAGAATGTAATGGAAAAACGATTTGC 656 || ||||| || | ||||| |||||| |||||||||||||||||||||||| | ||||| Sbjct 602 AAATTCCTTTATTAAAGTG--AGAAAATGTGTAAAAGAATGTAATGGAAAAAAGGTTTGC 659 Query 657 CTCAGGGATTTAAGAAATTCATACCTAAAGATATTTTTGT 696 ||||||| |||||||||||||||||||||||| |||||| Sbjct 660 CTCAGGGCTTTAAGAAATTCATACCTAAAGATGGTTTTGT 699 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25580477307 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5