BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36360.5
Length=1691
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321345 jgi|Araly1|321345|fgenesh1_pm.C_scaffold_4001402 2106 0.0
Ahg934434 jgi|Araly1|934434|scaffold_402422.1 363 3e-99
Ahg934451 jgi|Araly1|934451|scaffold_402439.1 99.0 1e-19
> Ahg321345 jgi|Araly1|321345|fgenesh1_pm.C_scaffold_4001402
Length=1497
Score = 2106 bits (1140), Expect = 0.0
Identities = 1420/1546 (92%), Gaps = 56/1546 (4%)
Strand=Plus/Plus
Query 105 ATGCATCACTGGGTTCAAGCTTCTTCTTCCGATTTCAGTGGAACTCCTCCGCAAGCTCGG 164
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1 ATGCATCACTGGGTTCAAGCTTCTTCTTCCGATTTCAGTGGAACTCCTCCGCAGGCGCGG 60
Query 165 AGTGGACATACAGCTGTCAATGTCGGAAAATCCATGGTGGTGGTGTTCGGTGGTCTCGTC 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGTGGACATACAGCTGTCAATGTCGGAAAATCCATGGTGGTGGTGTTCGGTGGTCTCGTC 120
Query 225 GATAAGAAATTCCTCAGCGATATAATTGTTTATGATATTGAAAACAAACTCTGGTTTGAG 284
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GATAAGAAATTCCTCAGTGATATAATTGTTTATGATATCGAAAACAAACTCTGGTTTGAG 180
Query 285 CCAGAATGTACTGGCAGCGAGTCTGAAGGACAAGTGGGTCCTACACCTCGTGCGTTTCAT 344
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 181 CCAGAGTGTACTGGCAGCGAGTCTGAAGGACAAGTAGGTCCTACACCGCGTGCATTTCAT 240
Query 345 GTTGCTATTACAATCGATTGTCATATGTTCATCTTTGGTGGACGTTCTGGTGGCAAGAGG 404
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GTTGCCATCACAATCGATTGCCATATGTTCATCTTTGGTGGACGTTCTGGTGGCAAAAGG 300
Query 405 TTGGGTGACTTCTGGGTTCTAGATACAGGTACGTATATGCTAACATTTGCTGCAGATATA 464
||||| |||||||||||||| ||||||| | |||||| || || |
Sbjct 301 TTGGGGGACTTCTGGGTTCTTGATACAG--A--TATATG---------GC---AG-T--- 340
Query 465 TGGCAGTGGTCTGAATTGACTAGCTTCGGCGACTTACCTACACCTCGTGATTTTGCTGCC 524
|| | ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 -GG---T---CTGAACTGACTAGCTTCGGCGACTTACCTACACCTCGTGATTTTGCTGCT 393
Query 525 GCTGCTGCTATTGGGAGCCAAAAAATTGTGTTGTGCGGCGGCTGGGACGGTAAAAAGTGG 584
||||| ||||| |||| |||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 394 GCTGCAGCTATCGGGAACCAAAAAATTGTATTGTGTGGCGGCTGGGATGGTAAAAAGTGG 453
Query 585 CTGTCAGATGTTTATGTTATGGACACAATGTCCCTTGAATGGCTGGAGCTATCGGTTTCA 644
||||||||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 454 CTGTCAGATGTATATGTTATGGATACAATGTCCCTTGAATGGATGGAGCTGTCGGTTTCG 513
Query 645 GGGTCATTGCCACCTCCTAGATGTGGTCATACGGCCACAATGGTGGAGAAACGATTACTT 704
|||||| ||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct 514 GGGTCACTGCCACCTCCTAGATGTGGTCATACAGCCACCATGGTTGAGAAACGGTTACTT 573
Query 705 GTTTTCGGTGGCCGAGGAGGTGGTGGCCCAATCATGGGTGATTTGTGGGCTTTGAAGGGT 764
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 GTTTTTGGTGGCCGAGGAGGTGGTGGCCCAATCATGGGTGATTTGTGGGCTTTGAAGGGT 633
Query 765 CTGATAGATGAAGAGCGTGAAACACCTGGATGGACCCAACTCAAGCTTCCTGGACAAGCA 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 CTGATAGATGAAGAGCGTGAAACACCTGGATGGACCCAACTCAAGCTTCCTGGACAAGCA 693
Query 825 CCATCATCTCGATGTGGTCATACAGTTACATCTGGAGGACATTATCTTCTGTTATTTGGG 884
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 694 CCATCATCTCGATGTGGTCACACAGTTACATCTGGAGGGCATTATCTTCTGTTGTTTGGG 753
Query 885 GGACATGGAACTGGTGGATGGCTGAGTCGTTATGATGTTTACTATAATGATACTATAATT 944
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 754 GGACATGGAACTGGTGGATGGCTGAGTCGTTATGATGTCTATTATAATGATACTATAATT 813
Query 945 TTGGACAGAGTAACTGCTCAGTGGAAGCGCTTACCAATAGGCAATGAGCCTCCTCCTCCT 1004
||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||
Sbjct 814 TTGGACAGAGTAACTGCTCAGTGGAAGCGTTTACCAATAAGCAATGAGCCTCCACCTCCT 873
Query 1005 CGAGCTTACCATACCATGACTTGT-ATTGGAGCTCGTCATCTTTTAATTGGTGGTTTTGA 1063
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 874 CGAGCTTACCATACCATGACT-GTTATTGGGGCTCGTCATCTTTTAATTGGTGGTTTTGA 932
Query 1064 TGGAAAATTGACCTTCGGTGATCTCTGGTGGTTAGTTCCCGAAGATGATCCGATAGCCAA 1123
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 933 TGGAAAATTGACCTTCGGTGATCTCTGGTGGTTGGTTCCCGAAGATGATCCGATAGCCAA 992
Query 1124 GAGGTCTTCTGTGCCTCAAGTTGTAAACCCTCCTGAAATTAAAGAGTCAGAGAGAGAGTT 1183
|||||||||||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 993 GAGGTCTTCTGTACCTCAACTTATAAACCCTCCTGAAATTAAAGAGTCAGAGAGAGA--- 1049
Query 1184 GGACAAGTTGAGAGTTTGGTCACGGCAGGAAAGGGGACAAGATGGATTCAGTATTGTTGA 1243
| ||| || || |||||||||||||||| |||| ||||||||||||
Sbjct 1050 --A----TTG-GA-------CA----AGGAAAGGGGACAAGAGGGATGCAGTATTGTTGA 1091
Query 1244 CTTGCAACAGAAAATGGGAATATCTGTTTCATCAGGGTTGCGCCTTCAAATTCCCGAGGA 1303
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 ATTGCAAAAGAAAATGGGAATATCTGTTTCATCAGGGTTGCGCCTTCAAATTCCCGAGGA 1151
Query 1304 GTCAGAAGATCAAGAGTTTGTTGAATTAGGAACAAGATTAATTGAGGGAGATGTAGTTGA 1363
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 GTCAGAAGATCAAGAATTCGTTGAATTAGGAACAAGATTAATTGAGGGAGATGTAGTTGA 1211
Query 1364 TGAACGGGCCTCTATGATTCAGATGGCCGCTCAAGCACTTCGTCAGCATTGGAAACAGTC 1423
|| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1212 TGGCCGGGCCTCTATGATACAGATGGCCGCTCAAGCACTTCGTCAGCATTGGAAAGAGTC 1271
Query 1424 CACTCCGAGAACTTTACAACTAAAAGAGCTTGGTTCCTTACTTCGAGATTATCAGCGA-C 1482
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1272 CACTCCAAGAACTTTACAACTAAAAGATCTTGGTTCCTTACTTCGAGATTATCAGCGTTC 1331
Query 1483 TTG-TTACACGAATTTTCAC-T-A--CACAGAGCAGCTTAACATCTGCTGATTTTGGCCT 1537
|| |||| |||| ||||| | | |||||||||||||||||||| |||||||||||||
Sbjct 1332 TTTCTTACCCGAAAATTCACGTGATACACAGAGCAGCTTAACATCTACTGATTTTGGCCT 1391
Query 1538 CCCTGGAACGAAGACCTTTACGTTTTATCATATCAAAAGTTCTTCCGAGTTGCGGATTAA 1597
||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1392 CCCTGGAGCGAAGACCTTTACGTTTTATCATATGAAAAGCTCTTCCGAGTTGCGGATTAA 1451
Query 1598 TGACATCTCGAAGTTGCTGGAAGAATACAAAACTCTTGTAATCTGA 1643
||||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct 1452 TGACATCCCGAAGTTGCTGGAAGAATACAAAACCCTTCTAATCTGA 1497
> Ahg934434 jgi|Araly1|934434|scaffold_402422.1
Length=931
Score = 363 bits (196), Expect = 3e-99
Identities = 275/310 (89%), Gaps = 18/310 (6%)
Strand=Plus/Plus
Query 1055 TGGTTTTGATGGAAAATTGACCTTCGGTGATCTCTGGTGGTTAGTTCCCGAAGATGATCC 1114
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 413 TGGTATTGATGGAAAATTGACCTTCGGTGATCTCTGGTGGTTGGTTCCCGAAGATGATCC 472
Query 1115 GATAGCCAAGAGGTCTTCTGTGCCTCAAGTTGTAAACCCTCCTGAAATTAAAGAGTCAGA 1174
||||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||||
Sbjct 473 GATAGCCAAGAGGTCTTCTGTACCTCAACTTATAAACCCTCCTGAAATTAATGAGTCAGA 532
Query 1175 GAGAGAGTTGGACAAGTTGAGAGTTTGGTCACGGCAGGAAAGGGGACAAGATGGATTCAG 1234
|||||| |||||| | | | ||||||||||||||||| |||| |||
Sbjct 533 GAGAGAATTGGAC------A-A--------A---CAGGAAAGGGGACAAGAGGGATACAG 574
Query 1235 TATTGTTGACTTGCAACAGAAAATGGGAATATCTGTTTCATCAGGGTTGCGCCTTCAAAT 1294
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 TATTGTTGAGTTGCAAAAGAAAATGGGAATATCTGTTTCATCAGGGTTGCGCCTTCAAAG 634
Query 1295 TCCCGAGGAGTCAGAAGATCAAGAGTTTGTTGAATTAGGAACAAGATTAATTGAGGGAGA 1354
|||| | ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 635 TCCCAATGAGTCAGAAGATCAAGAATTCGTTGAATTAGGAACAAGATTAATTGAGGGAGA 694
Query 1355 TGTAGTTGAT 1364
||||| ||||
Sbjct 695 TGTAGCTGAT 704
Score = 272 bits (147), Expect = 6e-72
Identities = 175/187 (94%), Gaps = 7/187 (4%)
Strand=Plus/Plus
Query 775 AAGAGCGTGAAACACC----TGGA---TGGACCCAACTCAAGCTTCCTGGACAAGCACCA 827
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 210 AAGAGCGTGAAACACCTGGATGGAGTCTGGACCCAACTCAAGCTTCCTGGACAAGCACCA 269
Query 828 TCATCTCGATGTGGTCATACAGTTACATCTGGAGGACATTATCTTCTGTTATTTGGGGGA 887
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 270 TCTTCTCGATGTGGTCATACAGTTACATCTGGAGGGCATTATCTTCTGTTATTTGGGGGA 329
Query 888 CATGGAACTGGTGGATGGCTGAGTCGTTATGATGTTTACTATAATGATACTATAATTTTG 947
|||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 330 CATGGAACTGGTGGATGGCTGAGTCGTTATTATGTCTATTATAATGATACTATAATTTTG 389
Query 948 GACAGAG 954
|||||||
Sbjct 390 GACAGAG 396
Score = 250 bits (135), Expect = 3e-65
Identities = 164/178 (92%), Gaps = 1/178 (1%)
Strand=Plus/Plus
Query 1406 TCAGCATTGGAAACAGTCCACTCCGAGAACTTTACAACTAAAAGAGCTTGGTTCCTTACT 1465
|||| |||||||| |||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 705 TCAG-ATTGGAAAGAGTCCACTCCAAGAACTTTACAACTAAAGGAGCTTGGTTCCTTACT 763
Query 1466 TCGAGATTATCAGCGACTTGTTACACGAATTTTCACTACACAGAGCAGCTTAACATCTGC 1525
| | |||||||||||||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct 764 TGGGGATTATCAGCGACTTGTTACCCGAAAATTCGCTACACAGAGCAGCTTAACATCTGC 823
Query 1526 TGATTTTGGCCTCCCTGGAACGAAGACCTTTACGTTTTATCATATCAAAAGTTCTTCC 1583
||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct 824 TGATTTTGGCCTCCCCGGAACAAAGACCTTTATGTTTTATCATATCAAAAGCTCTTCC 881
Score = 106 bits (57), Expect = 6e-22
Identities = 73/80 (91%), Gaps = 4/80 (5%)
Strand=Plus/Plus
Query 91 ATCATCGGCT---T-AAAATGCATCACTGGGTTCAAGCTTCTTCTTCCGATTTCAGTGGA 146
|||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3 ATCATCGGCTGAATAAAAATGCATAACTGGGTTCAAGCTTCTTCTTCCGATTTCAGTGGA 62
Query 147 ACTCCTCCGCAAGCTCGGAG 166
||||||||||| || |||||
Sbjct 63 ACTCCTCCGCAGGCGCGGAG 82
> Ahg934451 jgi|Araly1|934451|scaffold_402439.1
Length=202
Score = 99.0 bits (53), Expect = 1e-19
Identities = 72/80 (90%), Gaps = 5/80 (6%)
Strand=Plus/Plus
Query 91 ATCATCGGCT---T-AAAATGCATCACTGGGTTCAAGCTTCTTCTTCCGATTTCAGTGGA 146
|||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3 ATCATCGGCTGAATAAAAATGCATAACTGGGTTCAAGCTTCTTCTTCCGATTTCAGTGGA 62
Query 147 ACTCCTCCGCAAGCTCGGAG 166
|||||||||| || |||||
Sbjct 63 -CTCCTCCGCAGGCGCGGAG 81
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63420257925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5