BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36370.1
Length=2965
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901488 jgi|Araly1|901488|Al_scaffold_0004_2138 4272 0.0
Ahg901667 jgi|Araly1|901667|Al_scaffold_0004_2317 296 6e-79
Ahg901652 jgi|Araly1|901652|Al_scaffold_0004_2302 226 8e-58
Ahg934449 jgi|Araly1|934449|scaffold_402437.1 224 3e-57
Ahg934429 jgi|Araly1|934429|scaffold_402417.1 224 3e-57
Ahg934455 jgi|Araly1|934455|scaffold_402443.1 187 4e-46
> Ahg901488 jgi|Araly1|901488|Al_scaffold_0004_2138
Length=2826
Score = 4272 bits (2313), Expect = 0.0
Identities = 2641/2802 (94%), Gaps = 12/2802 (0%)
Strand=Plus/Plus
Query 1 TCGTGATTCTCGTCGTGAAGAACCCATGTTATCAACAAGACGACGCATCTTCTTCGATTC 60
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 29 TCGTGACTCTCGTCGTGAAGAATCCATGTTATCAACAAGACGACGCATCTTCTTCGAGTC 88
Query 61 AAGAGATTTCGATCTCAGCTTCTGAAATTGCTTCCTGGGATATGTCAGAGATACTCTCTT 120
|||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 89 AAGATATTTCGATCTCAGCTTCTGAAATTGCTTCCTGGAATTTGTCAGAGATACTCTCTT 148
Query 121 ACGGAAGTGTAAAAGTTCGAGCTCATCGAACTAGGCTTATTC-AGGAATCCTCGTATTTC 179
||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 149 ACGGAAGAGTAAAAGTTCGAGCTCATCGAACTAGGCTTA-TCGAGGAATCCTCGTATTTC 207
Query 180 CATGGCCTTCTAAGCGGAAGCTTCAGTGAATCAGGCCTTGATCATATCTCTGTTGAATGG 239
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 CATGGTCTTTTAAGCGGAAGCTTCAGTGAATCAGGCCTTGATCATATCTCTGTTGAATGG 267
Query 240 AA-CCTAGAGAGTTTCTTGAATCTTCTCATGTGTTTGTATGGTTACGATATAGAGATTAC 298
|| || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 268 AATCC-AGAGACTTTCTTGAATCTTCTCATGTTTTTGTATGGTTACGATATAGAGATTAC 326
Query 299 ATCCAGTAGTTTCTTACCTCTATTTGAGTCTGCACTCTACTTTGGGGTGGAGAAGCTTCT 358
||||| ||||||||||||| | |||||| |||| ||||| ||||||||||||||||||||
Sbjct 327 ATCCACTAGTTTCTTACCTTTGTTTGAGACTGCGCTCTATTTTGGGGTGGAGAAGCTTCT 386
Query 359 CTCTATATGCAAAAACTGGCTTTCAGTGTTGGCATCATCGAATGACAACGCATTACCGAA 418
||||| |||||||| |||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 387 CTCTAAATGCAAAAGCTGGCTTTCAGTGTTGGCATTATCGAATGATACCGCATTACCGAA 446
Query 419 AGTAGAATTATCTGACCTTATTCAGATTTGGAGTTTTGGTCTCGAGCATGCTGGAGAATT 478
| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 447 ACTAGAATTGTCTGACCTTATTCAGATGTGGAGTTTTGGTCTCGAGCATGCTGGAGAATT 506
Query 479 TGTGCCAGATCTCTGTGTGGCCTATCTTGCAAAGAATTTCATGTTGGTGAAATCTGATAA 538
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 TGTACCAGATCTCTGTGTGGCCTATCTTGCAAAGAATTTCATGTTGGTGAAATCTGATAA 566
Query 539 GTATTTTGGAAATGTTCCATATGAGTTGTTGATGTGGTGCGTTAAACA-TCCTCACCTGA 597
|||||||||||||||||| ||||||||||||||||| ||| ||||||| ||| |||||||
Sbjct 567 GTATTTTGGAAATGTTCCGTATGAGTTGTTGATGTGTTGCATTAAACATTCC-CACCTGA 625
Query 598 CTGTACACAGTGAGATGGACCTTGTTGATGGACTTCTTATTTGGCTTGATGCCGGTGGAA 657
|||||||||| |||||| | |||| ||||| ||||||| ||||||||||| |||| |||
Sbjct 626 CTGTACACAGCGAGATGCATCTTGCTGATGCACTTCTTGTTTGGCTTGATACCGGCAGAA 685
Query 658 GATTGTCTGACTTACCAGAGAGTAGTCAAGATAACACAATCAACTTGATGGAACAGGTCC 717
|| |||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 686 GAATGTCTGACTTGTCGGATAGTAGTCAAGATAACACAATCAACTTGATGGAACAGGTCC 745
Query 718 GTTTTAGTCTTTTGCCGCTGTGGTTTATTGCAGGAAGAAGCAAGTCTCATGGTTTCTCAA 777
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 746 GTTTTAGTCTTTTGCCGCTGTGGTTTATTGCTGGAAGAAGCAAGTCTCATGGATTCTCAA 805
Query 778 AGTTTGCTGATCAAAGCATTGAATTGGTGACTAAACTAATGAAAATGCCATCCACATGCT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 AGTTTGCTGATCAAAGCATTGAATTGGTGACTAAACTAATGAAAATGCCATCCACATGCT 865
Query 838 TGGTCGATAGTCTAACCGATGGCCCTCCAACTGATGTTAGAGTTCGGCTGACTGAATACA 897
|||||||||||||||| ||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 866 TGGTCGATAGTCTAACAGATGGCCCTCCTACTGATCTTAGAGTTCGGCTGACCGAATACT 925
Query 898 GTGAGATATTGGATCTCTCAGGATGTCCACAGTTAAATGAAGCCAGCCTGCTACTGTCAA 957
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 926 CTGAGATATTGGATCTCTCAGGATGTCCACAGTTAAATGAAGCCAGTCTGCTACTGTCAA 985
Query 958 TACTGCCTAACTCGTATTTCGCAAACCTCAGGTGGAGGAAGAGTTTGGAAAGTTTCCTAA 1017
||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 986 TACCGCCTAACTCGTATTTCGCAAACCTCAGGTGGAGAAAGAGTTTGAAAAGTTTCCTAA 1045
Query 1018 AGAACCCTGATGACGATGAAAGACATCAAGAACAAATATCTCACAGAACTTTACCAATTT 1077
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1046 AGAACCCTGATGACGATGAAAGACATCAAGAACAATTATCTCACAGAACTTTACCAATTT 1105
Query 1078 TGTCTTTTGAATCGGTGAAAGAGATTGATATTTCCAAGTGTCAGAGGCTTGATTATAAAG 1137
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1106 TGTCTTTCGAATCGGTGAAAGAGATTGATATTTCCAAGTGCCAGAGGCTTGATTATAAAG 1165
Query 1138 TTGTGATCAAGTGCTTCTCTAAGTCATTCCCATCATTAAGAAAACTAAGAGCTGCTTATC 1197
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1166 CTGTGATCAAGTGCTTCTCTAAGTCATTCCCATCATTAAGAAAACTGAGAGCTGCTTATC 1225
Query 1198 TCTTAAACATCAAGGTGTCTACCCTGCTTGAACTTCTCCTGAATTTTCGCGAGCTCACTG 1257
||||||||||||||||||| || ||||||||||||||| ||||||||| ||||||||||
Sbjct 1226 TCTTAAACATCAAGGTGTCCACAATGCTTGAACTTCTCCAGAATTTTCGTGAGCTCACTG 1285
Query 1258 AAGTTGATTTAACAGTTGATGTCTCTCCTATAATACCGGTTCAAGCATCTGTGTTTTACT 1317
|||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||
Sbjct 1286 AAGTTGATTTAACAGTTGATTTCGCTCCTATAATACCGGTTCAAGCATCGGTGTTTTACT 1345
Query 1318 CTGGCCAAGGTCATTGTTTGCTATCGAGTATCACAAGATTAACGCTGGAGGGTAGAAGTG 1377
|||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||
Sbjct 1346 CTGGCCAAGGTCATTGTTCGCTATCGAATATCACAAGACTAACGCTGGAGGGTAGAAGTG 1405
Query 1378 ACATATGTGATATGGAACTACGGAGCATCTCTAGAGTATGTGAGTCGTTATGTTACCTGA 1437
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1406 ACATATGTGATATGGAACTACGGAGCATCTCTAGAGTATGTGATTCGTTATGTTACCTGA 1465
Query 1438 ACATAAAAGGGTGTGCACTACTCTCAGATGCATGTATAGCATCTGTTATACAGAGGTGTA 1497
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1466 ACATAAAAGGGTGTGCACTACTCTCAGATGCATGTATAGCATATGTTATACAGAGGTGTA 1525
Query 1498 AAAAATTATGCTCTCTCATAGTTTGCTATACCTCTTTCTCGGAAAATTCGATTTTGGCAC 1557
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1526 AGAAATTATGCTCTCTCATAGTTTGCTATACCTCTTTCTCGGAAAATTCGATTTTGGCAC 1585
Query 1558 TATGCGCTACTATATCTATGACCAATGAGCATATGGATATAAAT-TCAGTAGCATCCAAT 1616
||||||||||||| |||||||||||||||||||||||| | || ||| ||||||||| |
Sbjct 1586 TATGCGCTACTATTTCTATGACCAATGAGCATATGGAT-TCAAGCTCATTAGCATCCAGT 1644
Query 1617 CTTCAAACT-CTGCACATGAGTAAATGCGAGGGAATTAGTGAGACGTCGCTTCTTAACTT 1675
||||||| | || |||||||||||||||||||||| ||||||||| || ||||| || ||
Sbjct 1645 CTTCAAA-TGCTTCACATGAGTAAATGCGAGGGAAGTAGTGAGACATCACTTCTAAAGTT 1703
Query 1676 GATAACTCATTCACAGAAAATGAAAAGTCTTTGCTTAAGGGATACAAAAGTTTCAGACAG 1735
|||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1704 AATAACTCAGACACAAAAAATGAAGAGTCTTTGCTTAAGGGATACAAAAGTTTCAGACAG 1763
Query 1736 TGTGCTATGTGAATTCCCCGGCTCTACCTTGGAAGCACTTGATATTTCAAATACCACGAT 1795
|||||| |||||||| ||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1764 TGTGCTGTGTGAATTACCCGGCTCTTCCTTGGAAGCACTTGATATTTCAAATACCATGAT 1823
Query 1796 ATCTTGGATGGCTCTTGCTCGTGTAATTAGCAGAAATCCTAATCTAAAAACCCTCAAAGC 1855
|||| ||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1824 ATCTAGGATGGCTCTTACTCATGTAATTAGCAGAAATCCTAATCTAAAAAGCCTCAAAGC 1883
Query 1856 CAGGGGATGTAAAAATCTACTCCAATTAGAAGTTGACGGCAGAACTGACAATTTCTCTCC 1915
||||||||||||||||| || |||||| ||||||| || |||||||| |||| ||||||
Sbjct 1884 AAGGGGATGTAAAAATCTGCTTCAATTACAAGTTGATGGGAGAACTGAAAATTCCTCTCC 1943
Query 1916 GTTGGTTTCTGGTCAAGAGGTGTTTAAATGTTTAAGCAAGGGGAGTGGATTGGAGGAGCT 1975
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1944 ATTGTTTTCTGGTCAAGAGGTGTTTAAATGTTTAAGCAAGGGGAGTGGATTGGAGGAACT 2003
Query 1976 TGAGATTGGTTGGGGGTTTTCTTATTTCTCTTTTGAGTCTTTGAGACCTGCAGCTTCGTT 2035
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2004 TGAGATTAGTTGGGGGTTTTCTTATTTCTCTCTTGAGTCTTTGAGACCTGCAGCTTCGTT 2063
Query 2036 CCTACGAGTTATAAGTGTGGGTTTGGGTGCTTCCTTAGGTGAAGATGTTTTAAAGCTTCT 2095
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2064 TCTACGAGTTATAAGTGTGGGTTTGGGTGCTTCCTTAGGTGAAGATGCTTTAAAGCTTCT 2123
Query 2096 ACCTTCAACTTGTCCTTTGCTAGAGTCTATCGTCCTCCATTTTCAGGAAATATCTGATTC 2155
| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2124 ATCTTTAACTTGTCCTTTGCTAGAGTCTATCGTCCTCTGTTTTCAGGAAATATCTGATTC 2183
Query 2156 TGCCTTGACAAGTGTCCTGACATCGTTGAAGCACCTGCAAGAGTTAGCTTTGTCCTATTG 2215
||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 2184 TGCCTTGACAAGTATCCTGACATCATCAAAGCACCTGCAAGAGTTAGCTTTGTCCTATTG 2243
Query 2216 CTTCGGTGAAATATCCCTTCAAAGTTTCAAGTTCTCTATGCCGAACCTGAGAAAACTAAG 2275
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2244 TTTCGGTGACATATCCCTTCAAAGTTTCAAGTTCTCTATGCCGAACCTGAGAAAACTTAG 2303
Query 2276 GCTTGAGAGGGTAACTCGTTGGATGACCAATGATGATTTACTTGTTCTCACACAAAGCTG 2335
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2304 GCTTGAGAGGGTATCTCGTTGGATGACCAATGATGATTTACTTGTTCTCACACAAAGCTG 2363
Query 2336 TCCGAACTTGACCGAGCTTTCATTAGTAGGATGTTTACACTTAACTTCAGATTGTCAACC 2395
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 2364 TCCGAACTTGACCGAGCTTTCGTTAGTAGGATGTTTACACTTAAATTCAGATTGTCAACC 2423
Query 2396 TATCATCTCAGCTGGATGGCCAGGAATGATTTCTCTTCATCTAGAGGAATGTGGAAGTAT 2455
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2424 TATCATCTCAGCTGGATGGCCGGGAATGATTTCTCTTCATCTAGAGGAATGTGGAAGTAT 2483
Query 2456 AACAGAGAATGGTGTCGCTTCTCTCTATGGTTGCATTGCTCTTGAAGACCTTTTTCTTCG 2515
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct 2484 AACAGAGAATGGTGTCGCTTCTCTCTATGGTTGCGTTGCTCTGGAAGACCTTTTGCTTCG 2543
Query 2516 CCACAACGGCTCTGGAATACAGAAAAGCTTCCTTCTTGATGCTACTTTGAAGTTTCCGAT 2575
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2544 CCACAACGGCTCTGGAATACAGAAAAGCTTCCTTCTTGATGCTACGTTGAAGTTTCCGAA 2603
Query 2576 GCTCCGGCTGGTATCTCTGGACATGTGTGATGCAAAGGAAGGCGGTTTTGATGTCCCAGA 2635
||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 2604 GCTTCGGCTGGTATCTCTGGACATGTGTGATGCAAAGGAAGGCGGCTTCGATGTCCCAGA 2663
Query 2636 GGAGAAAGAAGAAGGTCGTAGTCTAAGCATAGTCAAGATCAGTAGATGCAAGTCTGATAG 2695
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2664 GGAGAAAGAAGAAGGTCGTAGTCTAAGCATAGTGAAGATCAGTAGATGCAAGTCTGAGAG 2723
Query 2696 ATGCTCGCTGGGAAGACGTGCGGCTCCA-ATGCATAGAGAGACGCTGGTTATGTTATGGA 2754
| || ||||||||||| | | ||||||| || ||||||||||||||||| ||||||||||
Sbjct 2724 AAGCGCGCTGGGAAGAGGCGTGGCTCCAGAT-CATAGAGAGACGCTGGTCATGTTATGGA 2782
Query 2755 ATGGCCAAACCCTCACTAAAACACTGCTCAAACAAAGACTTT 2796
||||||||| | |||||||||| || || |||||||||||||
Sbjct 2783 ATGGCCAAAACTTCACTAAAACGCTACTAAAACAAAGACTTT 2824
> Ahg901667 jgi|Araly1|901667|Al_scaffold_0004_2317
Length=498
Score = 296 bits (160), Expect = 6e-79
Identities = 270/317 (85%), Gaps = 31/317 (10%)
Strand=Plus/Plus
Query 154 GGCTTATTC-AGGAATCCTCGTATTTCCATGGCCTTCTAAGCGGAAGCTTCAGTGAATCA 212
|||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 206 GGCTTA-TCGAGGAATCCTCGTATTTCCATGGCCTTCTAAGTGGAAGCTTCAGTGAATCA 264
Query 213 GGCCTTGATCATATCTCTGTTGAATGGAA-CCTAGAGAGTTTCTTGAATCTTCTCATGTG 271
||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||
Sbjct 265 GGCCTTGATCATATCTCTGTTGAATGGAATCC-AGAGACTTTCTTGAATCTTCTCA--TG 321
Query 272 TTTGTATGGTTACGATATAGAGATTACATCCAGTAGTTTCTTACCTCTATTTGAGTCTGC 331
|| | || | ||| | | |||| ||| | | | | |||| || ||||
Sbjct 322 --TG--T--TT--G-TAT-G-G-TTAC-TCC---A---T-TGA----TATTACAG-CTGC 356
Query 332 ACTCTACTTTGGGGTGGAGAAGCTTCTCTCTATATGCAAAAACTGGCTTTCAGTGTTGGC 391
|| || |||||||||| || ||||||||||| |||||||| |||||||||||| |||||
Sbjct 357 GCTTTATTTTGGGGTGGCGAGGCTTCTCTCTAAATGCAAAAGCTGGCTTTCAGTTTTGGC 416
Query 392 ATCATCGAATGACAACGCATTACCGAAAGTAGAATTATCTGACCTTATTCAGATTTGGAG 451
|||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 417 ATCATCGAATGACACCGCATTACCGAAACTAGAATTGTCTGACCTTATTCAGATTTGGAG 476
Query 452 TTTTGGTCTCGAGCATG 468
|||||||||||||||||
Sbjct 477 TTTTGGTCTCGAGCATG 493
Score = 158 bits (85), Expect = 3e-37
Identities = 114/127 (90%), Gaps = 5/127 (4%)
Strand=Plus/Plus
Query 31 ATCAACAAGACGACGCATCTTCTTCGATTCAAGAGATTTCGATCTCAGCTTCTGAAATTG 90
|||||| || || ||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 44 ATCAAC--GA-GAGGCATCTTCTTCGAGTCAAGAGATTTCGATCTCAGCTTCTGAAATCG 100
Query 91 CT-TCCTGGGATATGTCAGAGATACTCTCTTACGGAAGTGTAAAAGTTCGAGCTCATCGA 149
| ||||||| | ||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 101 -TATCCTGGGGTTTGTCAAAAATACTCTCTTACGGAAGAGTAAAAGTTCGAGCTCATCGA 159
Query 150 ACTAGGC 156
|||||||
Sbjct 160 ACTAGGC 166
> Ahg901652 jgi|Araly1|901652|Al_scaffold_0004_2302
Length=639
Score = 226 bits (122), Expect = 8e-58
Identities = 146/157 (93%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 154 GGCTTATTC-AGGAATCCTCGTATTTCCATGGCCTTCTAAGCGGAAGCTTCAGTGAATCA 212
|||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 197 GGCTTA-TCGAGGAATCCTCGTATTTCCATGGCCTTCTAAGTGGAAGCTTCAGTGAATCA 255
Query 213 GGCCTTGATCATATCTCTGTTGAATGGAA-CCTAGAGAGTTTCTTGAATCTTCTCATGTG 271
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 256 GGCCTTGATCATATCTCTGTTGAATGGAATCC-AGAGACTTTCTTGAATCTTCTCATGTG 314
Query 272 TTTGTATGGTTACGATATAGAGATTACATCCAGTAGT 308
||||||||||||| || || |||||||||||||||
Sbjct 315 TTTGTATGGTTACTCCATTGATATTACATCCAGTAGT 351
Score = 134 bits (72), Expect = 5e-30
Identities = 101/114 (89%), Gaps = 5/114 (4%)
Strand=Plus/Plus
Query 31 ATCAACAAGACGACGCATCTTCTTCGATTCAAGAGATTTCGATCTCAGCTTCTGAAATTG 90
|||||| || || ||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 44 ATCAAC--GA-GAGGCATCTTCTTCGAGTCAAGAGATTTCGATCTCAGCTTCTGAAATCG 100
Query 91 CT-TCCTGGGATATGTCAGAGATACTCTCTTACGGAAGTGTAAAAGTTCGAGCT 143
| ||||||| | ||||| | ||||||||||||||||| |||||||||||||||
Sbjct 101 -TATCCTGGGGTTTGTCAAAAATACTCTCTTACGGAAGAGTAAAAGTTCGAGCT 153
> Ahg934449 jgi|Araly1|934449|scaffold_402437.1
Length=226
Score = 224 bits (121), Expect = 3e-57
Identities = 167/188 (89%), Gaps = 7/188 (4%)
Strand=Plus/Plus
Query 1186 GAGCTGCTTATCTCTTAAACATCAAGGTGTCTACCCTGCTTGAACTTCTCCTGAATTTTC 1245
|||||||||||||||||||||| |||||||| || ||||||||||||||| |||||| |
Sbjct 1 GAGCTGCTTATCTCTTAAACATGAAGGTGTCCACAATGCTTGAACTTCTCCAGAATTTCC 60
Query 1246 GCGAGCTCACTGAAGTTGATTTAACA-GTTGATGTC-TCTCCTATAATACCGGTTCAAGC 1303
|||||||||||||||||| ||||| | |||||| | ||||| |||||||||||||||
Sbjct 61 GCGAGCTCACTGAAGTTGGTTTAA-ATGTTGAT-ACAGCTCCTGTAATACCGGTTCAAGA 118
Query 1304 ATC--T-GTGTTTTACTCTGGCCAAGGTCATTGTTTGCTATCGAGTATCACAAGATTAAC 1360
||| | |||||||||||||||||||||||||||| |||||||| |||||||||| ||||
Sbjct 119 ATCGGTGGTGTTTTACTCTGGCCAAGGTCATTGTTCGCTATCGAATATCACAAGACTAAC 178
Query 1361 GCTGGAGG 1368
||||||||
Sbjct 179 GCTGGAGG 186
> Ahg934429 jgi|Araly1|934429|scaffold_402417.1
Length=226
Score = 224 bits (121), Expect = 3e-57
Identities = 167/188 (89%), Gaps = 7/188 (4%)
Strand=Plus/Plus
Query 1186 GAGCTGCTTATCTCTTAAACATCAAGGTGTCTACCCTGCTTGAACTTCTCCTGAATTTTC 1245
|||||||||||||||||||||| |||||||| || ||||||||||||||| |||||| |
Sbjct 1 GAGCTGCTTATCTCTTAAACATGAAGGTGTCCACAATGCTTGAACTTCTCCAGAATTTCC 60
Query 1246 GCGAGCTCACTGAAGTTGATTTAACA-GTTGATGTC-TCTCCTATAATACCGGTTCAAGC 1303
|||||||||||||||||| ||||| | |||||| | ||||| |||||||||||||||
Sbjct 61 GCGAGCTCACTGAAGTTGGTTTAA-ATGTTGAT-ACAGCTCCTGTAATACCGGTTCAAGA 118
Query 1304 ATC--T-GTGTTTTACTCTGGCCAAGGTCATTGTTTGCTATCGAGTATCACAAGATTAAC 1360
||| | |||||||||||||||||||||||||||| |||||||| |||||||||| ||||
Sbjct 119 ATCGGTGGTGTTTTACTCTGGCCAAGGTCATTGTTCGCTATCGAATATCACAAGACTAAC 178
Query 1361 GCTGGAGG 1368
||||||||
Sbjct 179 GCTGGAGG 186
> Ahg934455 jgi|Araly1|934455|scaffold_402443.1
Length=664
Score = 187 bits (101), Expect = 4e-46
Identities = 128/141 (91%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 353 GCTTCTCTCTATATGCAAAAACTGGCTTTCAGTGTTGGCATCATCGAATGACAACGCATT 412
||||||||||| |||||||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct 524 GCTTCTCTCTAAATGCAAAAGCTGGCTTTCAGTTTTGGCATCATCGAATGACACCGCATT 583
Query 413 ACCGAAAGTAGAATTATCTGACCTTATTCAGATTTGGAGTTTTGGTCTCGAGCATGCTGG 472
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 584 ACCGAAACTAGAATTGTCTGACCTTATTCAGATTTGGAGTTTTGGTCTCGAGCATGGTT- 642
Query 473 AGAAT-TTGTGCCAGATCTCT 492
||||| ||| || | ||||||
Sbjct 643 AGAATCTTGCGCGAAATCTCT 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111947230055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5