BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36400.1
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482616 jgi|Araly1|482616|fgenesh2_kg.4__1676__AT2G36400.1 2222 0.0
> Ahg482616 jgi|Araly1|482616|fgenesh2_kg.4__1676__AT2G36400.1
Length=1510
Score = 2222 bits (1203), Expect = 0.0
Identities = 1380/1460 (95%), Gaps = 33/1460 (2%)
Strand=Plus/Plus
Query 107 ACAAGACTTTCATAAGCTATTAAATCAGAACCCTGGAAGACAAAAAAGGGGAAAAACCA- 165
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 71 ACAAGACTTTCATAAGCTATTAAATCAG-ACCCTGGAAGACAAAAAAGGTGAAAAACCAT 129
Query 166 T-TATCCTTAAAGTAACCAACACTTCTCTCTCTCTTTCTTCAATGGATTTGCAACTGAAA 224
| ||||| |||||||||| |||||||||||||| ||| | ||||||||||||||||||
Sbjct 130 TATATCCCAAAAGTAACCAGCACTTCTCTCTCTC-TTC--C-ATGGATTTGCAACTGAAA 185
Query 225 CAATGGAGAAGCCAGCAGCAGCAACAACATCAGACAGAGTCAGAAGAACAACCTTCTGCA 284
|||||||| | ||| ||| ||||| |||||||||||||||||||||||||||||
Sbjct 186 CAATGGAG-A---AGC--CAG---CAACAGCAGACAGAGTCAGAAGAACAACCTTCTGCT 236
Query 285 GCTAAGATACCAAAACATGTCTTTGACCAGATTCATTCTCACACTGCAACTTCTACTGCT 344
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 237 GCTAAGATACCAAAACATGTCTTTGACCAGATTCAATCTCACTCTGCAACTTCTACTGCT 296
Query 345 CTTCCTCTCTTTACCCCTGAGCCTACTTCTTCTAAACTCTCCTCTTTGTCTCCTGATTCT 404
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTTCCTCTCTTTGCCCCTGAGCCTACTTCTTCTAAACTCTCCTCTTTGTCTCCTGATTCT 356
Query 405 TCCTCCAGGTTCCCCAAGATGGGGAGCTTCTTTAGCTGGGCACAGTGGCAAGAACTTGAA 464
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TCTTCCAGGTTCCCCAAGATGGGGAGCTTCTTTAGCTGGGCACAGTGGCAAGAACTTGAA 416
Query 465 CTACAAGCTCTGATCTACAGGTACATGTTGGCTGGTGCTGCTGTTCCTCAGGAGCTCCTT 524
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 417 CTACAAGCACTGATCTACAGGTACATGTTGGCTGGTGCTGCTGTTCCTCAAGAACTCCTT 476
Query 525 TTACCAATCAAGAAAAGCCTTCTCCATCTATCTCCTTCCTACTTTCTTCACCATCCTCTT 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTACCAATCAAGAAAAGCCTTCTCCATCTATCTCCTTCCTACTTTCTTCACCATCCTCTT 536
Query 585 CAACACCTACCTCATTACCAACCTGCTTGGTATTTGGGAAGGGCAGCGATGGATCCTGAG 644
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 537 CAACACCTCCCTCATTACCAACCTGCTTGGTATTTGGGGAGGGCAGCGATGGATCCTGAG 596
Query 645 CCAGGCAGATGCAGGAGAACGGATGGTAAGAAGTGGAGATGTTCAAGAGACGTCTTCGCT 704
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 597 CCAGGGAGATGCAGGAGAACGGACGGTAAGAAGTGGAGATGTTCAAGAGACGTCTTCGCT 656
Query 705 GGCCACAAGTATTGCGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTG 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GGCCACAAGTATTGCGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTG 716
Query 765 GAAACTCCAACCACCGTCAATGCAACTGCCACGTCCATGGCTTCATCAGTAGCAGCCGCA 824
|||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||
Sbjct 717 GAAACTCCAACCACCGTCAATGCAACTGCCACGTCCATGGCTACAGCAGCAGCAGCCACA 776
Query 825 GCCACCACTACAACAGCAACAACAACATCTACGTTTGCTTTTGGTGGTGGTGGTGGTAGT 884
|||||||| |||||| | |||| |||||||||||||||||||||||||||||| ||||
Sbjct 777 GCCACCACAACAACA--A-CAACGTCATCTACGTTTGCTTTTGGTGGTGGTGGTGATAGT 833
Query 885 G---AGGAAGTGGTTGGTCAAGGAGGATCTTTCTTCTTCTCTGGCTCTTCTAACTCTTC- 940
| ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 834 GGTGAGGAAGTTGTGGGTCAAGGAGGATCTTTCTTCTTCTCTGGCTCTTCCAACTCTTCT 893
Query 941 --ATCTGAACTTCTCCACCTTAGTCAAAGTTGTTCGGAGATGAAGCAAGAAAGCAACAAC 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TCATCTGAACTTCTCCACCTTAGTCAAAGTTGTTCGGAGATGAAGCAAGAAAGCAACAAC 953
Query 999 ATGAACAACAAGAGGCCATACGAGTCCCACA-TCGGATTCAGTAACAACAGATCAGATGG 1057
||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 954 ATGAACAACAAGAGGCCATACGAGTCCCACAAT-GGATTCAGCAACAACAGATCAGATGG 1012
Query 1058 AGGACACATCCTGAGGCCCTTCTTTGACGATTGGCCTCGTTCTTCGCTCCAAGAAGCTGA 1117
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1013 AGGACACATCCTGAGGCCCTTCTTTGACGACTGGCCTCGTTCTTCGCTCCAAGAAGCTGA 1072
Query 1118 CAATAGTTCAAGCCCCATGAGCTCAGCCACTTGTCTCTCCATCTCCATGCCCGGGAACTC 1177
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1073 CAATAGTTCAAGCCCCATGAGCTCAGCCACTTGTCTCTCCATCTCCATGCCCGGAAATTC 1132
Query 1178 TTCCTCAGACGTCTCTCTGAAGCTGTCCACAGGCAACGAAGAGGGAGCCCGGAGCAACAA 1237
|||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 1133 TTCCTCAGACGTCTCTCTGAAGCTGTCCACAGGCAATGAAGAGGAAGCTCGGAGCAACAA 1192
Query 1238 CAATGGGAGAGATCAGCAAAACATGAGCTGGTGGAGCGGTGGAGGTTCCAACCACCATCA 1297
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1193 CAATGGGAGAGATCAGCAAAACATGAGCTGGTGGAGCGGTGGAGGGTCCAACCACCATCA 1252
Query 1298 TCACAACATGGGCGGACCATTGGCCGAAGCCCTGAGATCTTCTTCCTCATCTTCCCCAAC 1357
|||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1253 TCACCACATGGGCGGACCATTGGCCGAAGCACTGAGATCTTCCTCCTCGTCTTCCCCAAC 1312
Query 1358 CAGTGTTCTCCATCAGCTTGGTGTCTCGACACAAGCCTTTCATTGACCAGTGTAAAACCA 1417
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1313 CAGTGTTCTCCATCAGCTGGGTGTCTCGACTCAAGCCTTTCATTGACCAGTGTAAAACCA 1372
Query 1418 ACACAACAATGCGGTTTTTACTGTGTT-T-TTGG-TTTTTATCCAAATTTCCTGTATAAA 1474
||||||||| || ||||||||||| || | |||| ||||||| |||||||||||||||||
Sbjct 1373 ACACAACAACGCTGTTTTTACTGT-TTGTCTTGGGTTTTTATTCAAATTTCCTGTATAAA 1431
Query 1475 GAGGGGAGGCTTTTGTTGTCCTCTTCCCTTT-TTCTTTTAAGATTTCCCTTGTATCTGTA 1533
||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1432 GAGGGGAGGGTTTTGTTGTCCTCTTCCCTTTCTT-TTTTAAGATTTCCCTTGTATCTGTA 1490
Query 1534 GCCTTTCTCTGCAGATTTTA 1553
|| |||||||||||||||||
Sbjct 1491 GCTTTTCTCTGCAGATTTTA 1510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60525399305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5