BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36410.1
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482617 jgi|Araly1|482617|fgenesh2_kg.4__1677__AT2G36410.1 1718 0.0
Ahg323836 jgi|Araly1|323836|fgenesh1_pm.C_scaffold_5001380 494 8e-139
> Ahg482617 jgi|Araly1|482617|fgenesh2_kg.4__1677__AT2G36410.1
Length=1135
Score = 1718 bits (930), Expect = 0.0
Identities = 1096/1168 (94%), Gaps = 44/1168 (4%)
Strand=Plus/Plus
Query 32 AAACAGAGCTTGCTTTACCAAATACCACCGAAACCCACTAAGAATACAGCAAATCGTCTC 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACAGAGCTTGCTTTACCAAATACCACCGAAACCCACTAAGAATACAGCAAATCGTCTC 60
Query 92 TTCGCCATTAAAACACCTTCCTTT-G-CAAACAAAGCTTCAAACTTTCTCTTAAAACACC 149
| |||||||||||||||||||||| | |||| |||||||||| | ||||| | || |||
Sbjct 61 TCCGCCATTAAAACACCTTCCTTTGGACAAA-AAAGCTTCAAGC-TTCTC-T--AA-ACC 114
Query 150 CCCAAATCAGCAAAGATAGGGTTAATCGAAGAACCTCACCGTAAGTCCACTGAGGATTCA 209
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 CCCAAATCAGCAAAAATAGGGTTAATCGAAGAACCTCACCGTAAGTCCACTGAGGATTCA 174
Query 210 AGTTCTTGCTTTGGTTTAAGGAAGAAGAACAGCAAAAACCTCAAGGAGAAGAAGAAGTCA 269
| |||||||||||||||||||||||||| ||||||||||||||| | | |||||||||||
Sbjct 175 ACTTCTTGCTTTGGTTTAAGGAAGAAGAGCAGCAAAAACCTCAA-G-G-AGAAGAAGTCA 231
Query 270 AAGATGACTCAGAGTCAAACCAACGACGGAGCTGGAGCTGGAGCTGTTACGACGGTAGAA 329
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 232 AAGATGACTCAGAGTCAAACCAACGACGGAGCTGGAGCCGGAGCTGTTACGACGGTAGAA 291
Query 330 TCTGTTCCTCCTCAGCCTCAATCTCAGCCTCAGCCTCAGCCGCAGCAGCAGAGCAACGAG 389
|||||||||||||| | | | ||||| ||||||||||||||||||||||||
Sbjct 292 GCTGTTCCTCCTCAG-------C-C-G---CAGCCGCAGCCGCAGCAGCAGAGCAACGAG 339
Query 390 ATGGT-TCTGCATACGGGAAGCTTGAGTTTTAGTAGTCATATGTCGAGAGAAGACGAAGA 448
||||| | ||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 340 ATGGTGT-TGCATACGGGAAGTTTGAGTTTTAGTAGCCATATGTCGAGGGAAGACGAAGA 398
Query 449 GATGACTCGTTCTGCTCTTTCGGCGTTTAGAGCTAAAGAAGATGAGATTGAGAAGAGGAG 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 GATGACTCGTTCTGCTCTTTCGGCGTTTAGAGCTAAAGAAGATGAGATTGAGAAGAGGAG 458
Query 509 GATGGAAGTTCGTGAACGGATCCAAGCTCAATTGGGTCGGGTCGAACAAGAAACCAAACG 568
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 459 GATGGAAGTCCGTGAACGGATCCAAGCTCAATTGGGTCGGGTCGAGCAAGAAACCAAACG 518
Query 569 TCTCTCTACTATTCGTGAGGAGCTTGAGTCTATGGCAGATCCTATGAGGAAGGAAGTTTC 628
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCTCTCCACTATTCGTGAGGAGCTTGAGTCTATGGCAGATCCTATGAGGAAGGAAGTTTC 578
Query 629 TGTGGTTCGTAAGAAGATTGATAGTGTTAACAAAGAACTCAAACCTCTAGGTTCCACTGT 688
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 579 TGTGGTTCGTAAGAAGATTGATAGTGTTAACAAAGAACTCAAACCTTTAGGTTCCACTGT 638
Query 689 TCAAAAGAAGGAAAGGGAATACAAAGAAGCACTTGATACATTCAACGAGAAGAACAGGGA 748
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 639 TCAAAAGAAGGAAAGGGAATACAAAGAAGCACTTGATACATTCAATGAGAAGAACCGGGA 698
Query 749 GAAAGTACAGCTGATCACAAAACTCATGGAGATGGAACAGTTGGTTGGAGAAAGCGAGAA 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 GAAAGTACAGCTGATCACAAAACTCATGGAGATGGAACAGTTGGTTGGAGAAAGCGAGAA 758
Query 809 GTTGAGGATGATTAAGCTGGAGGAGCTGAGCAAGAGCATAGAAACCGTGTGAAAAAGGTT 868
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 759 GTTGAGGATGATTAAGCTGGAGGAGCTGAGCAAGAGCATAGAAACCGTGTGAAA--GGT- 815
Query 869 GTTCAAGAAGAACTAATTGGGTTCTTT-TGTG-TGATGTACCTACCTAGTTTAAAATTTT 926
|| |||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||
Sbjct 816 GTACAAGAA---CTAATTGGGTTCTTTGTGTGATGATGTACCTACCTAGTTTAAATTTTT 872
Query 927 CATCATGTAAGATGTGTGGGTTGCttttt--tttttATTGTTAT-AGtttttttAAAGTC 983
|||| ||||||||||||| || ||| ||||||||||| | |||||| ||||||
Sbjct 873 CATCTTGTAAGATGTGTGTATT--TTTAAGATTTTTATTGTTGTTAGTTTTG--AAAGTC 928
Query 984 TTTGGGGGTTTGATTTGTAAAATTTGTGGGTTCTCTCTTATTTTTGATT-AACCAAATTT 1042
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 929 TTTGGGGGTTTGATTTGTAAAATTTGTGGGTTCTCTCTTATTTTTGATTTAACCAAATT- 987
Query 1043 AGGGATATGGGAAAATGGGAGATTCTTAGGATACTGAAACTCATCACAGTGattattctt 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 AGGGATATGGGAAAATGGGAGATTCTTAGGATACTGAAACTCATCACAGTGATTATTCTT 1047
Query 1103 tctttctctgtattatgtttt-gtatctgtctttt-gaagaatttattatttttttttGG 1160
||||||||||||||||||||| |||| |||||||| ||||||||||||||| ||||||||
Sbjct 1048 TCTTTCTCTGTATTATGTTTTTGTATTTGTCTTTTTGAAGAATTTATTATTATTTTTTGG 1107
Query 1161 CTTTTTAGTAAAGTTTCTTCTCGTTGGC 1188
||||||||||||||||||||||||||||
Sbjct 1108 CTTTTTAGTAAAGTTTCTTCTCGTTGGC 1135
> Ahg323836 jgi|Araly1|323836|fgenesh1_pm.C_scaffold_5001380
Length=459
Score = 494 bits (267), Expect = 8e-139
Identities = 399/461 (87%), Gaps = 16/461 (3%)
Strand=Plus/Plus
Query 408 AGCTTGAGTTTTAGTAGTCATATGTCGAGAGAAGACGAAGAGATGACTCGTTCTGCTCTT 467
|||||||||||||||||||| ||||| | |||||||||||||||| |||||||||||||
Sbjct 7 AGCTTGAGTTTTAGTAGTCAGATGTCTAAAGAAGACGAAGAGATGGCTCGTTCTGCTCTC 66
Query 468 TCGGCGTTTAGAGCTAAAGAAGATGAGATTGAGAAGAGGAGGATGGAAGTTCGTGAACGG 527
|| || ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 67 TCTGCTTTTAGGGCTAAAGAAGATGAGATTGAGAAGAGGAAAATGGAAGTTCGTGAAAGG 126
Query 528 ATCCAA-GCTCA-ATTGGGTCGGGTCGAACAAGAAAC-CAAACGTCTCT-CTACTATTCG 583
| || ||||| || ||||| || || |||| || | ||||| | ||| ||||||
Sbjct 127 GT-TAAGGCTCAGCTT-GGTCGTGTTGAGGAAGAGACTC-GTCGTCT-TGCTAGTATTCG 182
Query 584 TGAGGAGCTTGAGTCTATGGCAGATCCTATGAGGAAGGAAGTT--TCTGTGGTTCGTAAG 641
|||||||||||| ||||||||||||| ||||||||||||||| | || ||| ||||||
Sbjct 183 CGAGGAGCTTGAGACTATGGCAGATCCCATGAGGAAGGAAGTTAAT-TG-GGTGCGTAAG 240
Query 642 AAGATTGATAGTGTTAACAAAGAACTCAAACC-TCTAGGTTCCACTGTTCAAAAGAAGGA 700
|||||||||||||| ||||||||||| ||||| | |||| || || ||||||||||||||
Sbjct 241 AAGATTGATAGTGTCAACAAAGAACTTAAACCAT-TAGGCTCTACAGTTCAAAAGAAGGA 299
Query 701 AAGGGAATACAAAGAAGCACTTG-ATACATTCAACGAGAAGAACAGGGAGAAAGTACAGC 759
||||||||||||||||||| ||| |||||||||||||||||||| | |||||||| ||||
Sbjct 300 AAGGGAATACAAAGAAGCA-TTGGATACATTCAACGAGAAGAACCGTGAGAAAGTTCAGC 358
Query 760 TGATCACAAAACTCATGGAGATGGAACAGTTGGTTGGAGAAAGCGAGAAGTTGAGGATGA 819
||||||| || || |||||||||| ||||||||||||||||||||||||| ||||| |||
Sbjct 359 TGATCACCAAGCTAATGGAGATGGGACAGTTGGTTGGAGAAAGCGAGAAGCTGAGGTTGA 418
Query 820 TTAAGCTGGAGGAGCTGAGCAAGAGCATAGAAACCGTGTGA 860
|||||||| ||||| |||||||||||||| |||| ||||
Sbjct 419 AGAAGCTGGATGAGCTAAGCAAGAGCATAGAGACCGAGTGA 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44565689973
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5