BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36420.1
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482620 jgi|Araly1|482620|fgenesh2_kg.4__1680__AT2G36420.1 1980 0.0
> Ahg482620 jgi|Araly1|482620|fgenesh2_kg.4__1680__AT2G36420.1
Length=1329
Score = 1980 bits (1072), Expect = 0.0
Identities = 1251/1335 (94%), Gaps = 21/1335 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGAGAAGGAGAAGAAGAAGCATTTACATGAGTTTCTTGAAGATGACCAAGAGCCT 60
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGAG-A--AGAAGAAGAAGCATTTACATGAGTTTCTTGAAGATGACCAAGAGCCT 57
Query 61 TTTCATCTTAACCATTACATCGGCAACCTTCGTTCTCAGATGGGTTGCTCCGATATGCGT 120
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 58 TTTCATCTTAACCATTACATCGGCGACCTTCGTTCTCAGATGGGTTGCTCCGATTTGCGT 117
Query 121 GTCAAGAAGCGAAAGTCCGATAACGTCGCCACGTTTCCTCCTGGTTTGTTCTCCTGCGAG 180
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 118 GTCAAGAAGCGAAAGTCCGACAACGTTGCGGCGTTTCCTCCTGGTTTGTTCTCCTGCGAG 177
Query 181 AACTCTTGTTTCTTCGCAGCTCATAAATCTCCTGACCCGAGAAAGTCTCCACTCTTTGAG 240
||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||
Sbjct 178 AACTCTTGTTTCTTCGCGGCTCATAAATCTCCTGACCCTAGAAAGTCTCCTCTATTTGAG 237
Query 241 CTCCGGTCGCC-GGGAAAGAAGAAGATACGTGACGGTCGAGTTTTCCTTCAGATACCGGC 299
|||||||| || ||| |||||||||| |||||| |||||||||||||| ||||| |||||
Sbjct 238 CTCCGGTCTCCAGGG-AAGAAGAAGACACGTGAGGGTCGAGTTTTCCTCCAGATTCCGGC 296
Query 300 GAGAACCGCCGCAATTCTCTTGGACGCAGCGGCGAGGATTCAGAAGCAGCAGTCAGAGAA 359
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 297 AAGAACCGCCGCAATTCTCTTGGACGCGGCGGCGAGGATTCAGAAGCAGCAGTCGGAGAA 356
Query 360 GGCTAAGACCAATAAAGCTCGGACCAGAGGAAACGGGTTTGGTATGTTCGGGTCTGTCTT 419
|||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 357 GGCTAAGAACAACAAAGCTCGGACCAGAGGTAACGGGTTTGGTATGTTCGGGTCTGTCTT 416
Query 420 GAAGCTGCTGAC-ATACCGTATAACAAAACCGCGTTTGGATAACGCTGATGGAAACGCAG 478
||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 417 AAAGCTGCTGACGA-ACCGTAAAACAAAACCGCGTTTGGATAACGCTGATGGAAACGCGG 475
Query 479 TTTCGTTGGAACGCGGGTCGGAA-C--C-----G-A--CG-AGTAGTAGCCGGA-GAGAG 525
||||||||| ||||||||||||| | | | | | |||||||||| || |||||
Sbjct 476 TTTCGTTGGGACGCGGGTCGGAAGCAACGAGTAGTAGTAGTAGTAGTAGCC-GAGGAGAG 534
Query 526 CGTATCGTGGAGATTAGTGATAAATGCTTTTGTGAAAGCCCTTTTCATTTTGTTCTCCAA 585
||| || |||||||| | ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 535 CGTTTCTTGGAGATTGGCGATAAATGCTTTTGTGAGAGCCCTTTCCATTTTGTTCTCCAC 594
Query 586 ACAACTCCTTCTTCCTCCGGTCACCAGACTCCTCACTTTACATCGACGGCCACTTCTCCG 645
||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||
Sbjct 595 ACAACTCCTTCTTCCTCCGGTCATCGGACTCCTCACTTTACATCGACGGCCAGTTCTCCG 654
Query 646 GCGCGACGCAGTACTGAGGACgaagatagcgatgagacagagagcttagagaaagtgaga 705
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GCGCGACGCAGTACAGAGGACGAAGATAGCGATGAGACAGAGAGCTTAGAGAAAGTGAGA 714
Query 706 ggacaagaagaagaagataaagaagaggaagacaaggaaCAATGTAGCCCTGTCTCTGTA 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GGACAAGAAGAAGAAGATAAAGAAGAGGAAGACAAGGAACAATGTAGCCCTGTCTCTGTA 774
Query 766 CTTGACCCTCTTgaggaggaggaggaggacgaggaCCACCACCAACACGAGCCTGATCCT 825
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 775 CTTGACCCTCTCGAGGAGGAGGAGGAGGACGAGGACCACCACCAACACGAGCCTGATCAT 834
Query 826 CCCAATAACCTCTCTTGCAGCTTTGAAATTGTACAACGGGCTAAAAGGCGGTTACTCAAG 885
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 835 CCCAATATCCTCTCTTGCAGCTTTGAAATTGTACAACGGGCGAAAAGGCGGTTACTCAAG 894
Query 886 AAGCTTCGTAGATTCGAGAAGTTAGCGGGGCTGGATCCTGTGGAGCTTgaagggaaaatg 945
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 895 AAGCTTCGTAGATTCGAGAAGTTAGCGGGGCTGGATCCTGTAGAGCTCGAAGGGAAGATG 954
Query 946 tcggaagaagaagatgaagaagaggaagagtatgaggagagcgaggaagaTGATAACATT 1005
||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 955 TCGGAAGAAGAAGATGAAGAAGAAGAAGAGTATGAGGAGAGTGAGGAAGACGATAACATA 1014
Query 1006 AGGATTTACGATTCAGATGAAGAATATGAGGACGTGGATGAAGCGATGGCACgagagagc 1065
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1015 AGGATTTACGATTCAGATGAAGAATATGAGGACGTGGATGAAGCAATGGCACGAGACAGG 1074
Query 1066 agatgcgcggaagatgagaagaggaagaagaatgatgagaggcaaaagaagTGGAGGATG 1125
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1075 GGATGCGCGGAAGAGGAGAAGAGGAAGAAGAATGATGAGAGGCAGAAGAAGTGGAGGATG 1134
Query 1126 ATGAATGCATGGAGGGTAGGGTTGGGAGCTGAGGAAGACGTGGACGCGGTGGTGCGGAAA 1185
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1135 ATGAATGCATGGAGGGTAGGGTTGGGAGCAGAGGAGGACGTGGACGCGGTGGTGCGGAAA 1194
Query 1186 GATTTGAGAGAGGAGGCCGGAGAATGGACAAGACACGGTGGAGAAGTGGAAGAGGCTGTG 1245
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1195 GATTTAAGAGAGGAGGCCGGAGAATGGACAAGACACGGTGGAGAAATGGAAGAGGCCGTG 1254
Query 1246 TCCGATCTCGAGCACTCTATCTTCTTCGTCTTGATTGATGAATTTTCCCGCGAACTTGTC 1305
||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1255 TCCGATCTCGAGCTCTCTATCTTCTTTGTCTTGATTGATGAATTTTCCCACGAACTTGTC 1314
Query 1306 TCTTCTTTTCTATGA 1320
||||||| |||||||
Sbjct 1315 TCTTCTTCTCTATGA 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49369177515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5