BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36430.1
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934274 jgi|Araly1|934274|scaffold_402262.1 2113 0.0
> Ahg934274 jgi|Araly1|934274|scaffold_402262.1
Length=1398
Score = 2113 bits (1144), Expect = 0.0
Identities = 1307/1385 (94%), Gaps = 13/1385 (1%)
Strand=Plus/Plus
Query 1 AATCAAAATGGTGGATGCGGCGGAGCAACCACCTTCT---ACC---T-C--CGAGGGAGA 51
|||||||||||||||||||||||||||||| |||||| || | | |||||||||
Sbjct 14 AATCAAAATGGTGGATGCGGCGGAGCAACCGCCTTCTGCCTCCGTATCCGACGAGGGAGA 73
Query 52 AAGCCTCCTCAAGATCCACATTGAGAGGATGCATAAGAAGCTGAAGGAACCACCACGGTT 111
||||||| ||||||||| ||||||||| |||||| ||||||||||||| ||||| |||||
Sbjct 74 AAGCCTCTTCAAGATCCGCATTGAGAGAATGCATGAGAAGCTGAAGGAGCCACCGCGGTT 133
Query 112 GCTCAGTTCGGCCGCCGGGAAACCTACTTGCTCCATCTTCCGGGTACCTCAGAGCATGAT 171
|| || ||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 134 ACTTAGCTCGGCTGCCGGAAAACCAACTTGCTCCATCTTCCGAGTACCTCAGAGCATGAT 193
Query 172 TGATTGTAATGGAAGATGCTATGAGCCACGAGTGGTCTCGATTGGACCGTACCACCGTGG 231
||||||||| || ||||| |||||||| |||||||||||| ||||||||| |||||||||
Sbjct 194 TGATTGTAACGGTAGATGGTATGAGCCGCGAGTGGTCTCGGTTGGACCGTTCCACCGTGG 253
Query 232 CCAAACACAACTCAAAATGATTGAAGAACACAAATGGCGTTACCTAAACGTTCTGCTCAC 291
|||||||| ||| |||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 254 CCAAACACGCCTCGAAATGATTCAAGAACACAAATGGCGTTACCTAAACGTTCTTCTCAC 313
Query 292 TAGAACCCAAAACCTAACTCTAGAGGATTACATGAAGAGCGTGAAGAACGTTGAGGAAGT 351
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 314 GAGAACCCAAAACCTAACTCTAGAGGATTACATGAAGAGCGTGAAGAGCGTTGAGGAAGA 373
Query 352 GGCGAGAGAATGTTACTCCGAGACAATCCACATGGACTCGGAAGAGTTCAACGAGATGAT 411
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 374 GGCGAGAGAGTGTTACTCCGAGACAATCCATATGGACTCGGAAGAGTTCAACGAGATGAT 433
Query 412 GGTTCTTGACGGTTGCTTTCTCCTTGAGCTGTTTCGCAAAGTGAACAATCTTGTTCCTTT 471
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 434 GGTTCTTGACGGTTGCTTTCTTCTTGAGCTGTTTCGCAAAGTGAACAATCTTGTTCCTTT 493
Query 472 CGAACCAAACGATCCACTTGTGGCCATGGCTTGGGTTCTTCCTTTCTTCTACAGAGATTT 531
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 494 CGAACCAAACGATCCACTTGTAGCCATGGCTTGGGTTCTTCCTTTCTTCTACAGAGATTT 553
Query 532 TCTCTGTCTTGAGAATCAAATCCCTTTCTTCGTTCTAGAAACTTTGTTCAATCTCACAAG 591
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 554 TCTCTGTCTTGAGAATCAAATCCCTTTCTTCGTTCTTGAAACTTTGTTCGATCTCACAAG 613
Query 592 AGGAGACAACGAAAACGAGACAAACGCTTCTTTACAATCTCTAGCGTTTGCGTTTTTCAA 651
|||||| ||| |||||||||| ||||||||||||| ||||||||||||||||| |||||
Sbjct 614 AGGAGATAACAAAAACGAGACCAACGCTTCTTTACCGTCTCTAGCGTTTGCGTTCTTCAA 673
Query 652 CAACATGATGCACAGAACAGAGGAAGATCTCGCCAGGTTCAAAGAGCTAAGAGCCAAACA 711
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 674 CAACATGATGCACAGAACAGACGAAGATCTCGCCAGGTTCAAAGAGCTAAGAGCAAAACA 733
Query 712 CCTCCTCGACCTCCTCCGGTCAAGTTTCATCCCGGAGAGTGAGCTTCACACGCCGCCGGC 771
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 734 CCTCCTCGACCTCCTCCGGTCAAGTTTCATCCCGGAGAGTCAGCTTCACACGCCGCCGGA 793
Query 772 AACGAATCCAGGGAAGGAAAAGATGCCGTCCCACATTATCCACAGCATTTCGAAGCTCCG 831
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 794 AACGAATCCAGGGAAGGAGAAGATGCCGTCCCACATCATCCACAGCATCTCGAAGCTCCG 853
Query 832 GCGAGCCGGGATCAAACTCCGAGAGCTGAAAGACGCAGAGAGCTTCTTAGTGGTGAGATT 891
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 854 GCGAGCAGGGATCAAACTCCGGGAGCTAAAAGACGCAGAGAGCTTCTTAGTGGTGAGATT 913
Query 892 CAGACACGGGA-CCATCGAGATGCCGGCGATCACCGTCGACGATTTCATGAGCAGTTTCT 950
||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 CAGACAC-GGAGCGATCGAGATGCCGGCGATCACCGTCGACGATTTCATGAGCAGTTTCT 972
Query 951 TAGAGAACTGCGTGGCATACGAGCAATGCCACGTGGCGTGCTCAATGCATTTCACGACAT 1010
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 973 TAGAGAACTGCGTGGCCTATGAGCAGTGCCACGTGGCGTGCTCAATGCATTTCACGACAT 1032
Query 1011 ACGCGACGCTCCTAGATTGTCTGACGAATACTTACAAGGACGTTGAGTATCTATGCGACC 1070
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1033 ACGCGACGCTCCTAGATTGTCTGACGAACACTTACAAGGACGTTGAGTATCTATGCGACC 1092
Query 1071 AAAACATCATAGAAAACTATTTCGGAACAGATACAGAGCTGGCGAAATTCGTGAACAGTT 1130
|||||||||||||||||||||||| |||||| |||||||| |||| |||||||||||||
Sbjct 1093 AAAACATCATAGAAAACTATTTCGCAACAGACACAGAGCTTGCGAGATTCGTGAACAGTC 1152
Query 1131 TAGGCAGAGATGTGGCGTTCGACATAACACAGTGTTATCTCAAAGACTTGTTTGAAGAAG 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 TAGGCAGAGATGTGGCGTTCGACATAACACAGTGTTATCTCAAAGACTTGTTTGAAGAAG 1212
Query 1191 TGAATGAGTATTACAAGAGTAGTTGGCACGTGGAATGGGCTACTTTCAAATTCACTTACT 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 TGAATGAGTATTACAAGAGTAGTTGGCACGTGGAATGGGCTACTTTCAAATTCACTTACT 1272
Query 1251 TTAACTCTCCTTGGTCTTTTGTCTCTGCTCTTGCTGCTCTTGTTCTTTTGGTCTTGTCCG 1310
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 TTAACTCTCCGTGGTCTTTTGTCTCTGCTCTTGCTGCTCTTGTTCTTTTGGTCTTGTCCG 1332
Query 1311 TTATCCAGACTATTTACACTGTTTTCCAGGCTTATCAAAAATAAATTTTTCAACCTTTTC 1370
||||||| ||| ||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1333 TTATCCAAACTGTTTACACTGTTTTCCAGGCTTATCAAAAATAAAATT--CAACCTTTTC 1390
Query 1371 ATTAT 1375
|||||
Sbjct 1391 ATTAT 1395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58430435830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5