BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G36440.1

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482622 jgi|Araly1|482622|fgenesh2_kg.4__1682__AT2G36440.1         287    2e-77


> Ahg482622 jgi|Araly1|482622|fgenesh2_kg.4__1682__AT2G36440.1
Length=231

 Score =  287 bits (155),  Expect = 2e-77
 Identities = 188/204 (92%), Gaps = 2/204 (1%)
 Strand=Plus/Plus

Query  23   CTAGCAGGTCAGACGAATTTCAAAGGCAGATAGATCATAAAGAGATGCCTCGAGATCACC  82
            |||||||| || ||||| ||||||||| ||||||||||||||||||||||| ||||||||
Sbjct  29   CTAGCAGGCCAAACGAAATTCAAAGGCTGATAGATCATAAAGAGATGCCTCAAGATCACC  88

Query  83   AAATTGAAAGGCACACTCATATTCACACGACGCGTTAC-CGAGGGGGCAGTCTAGTTGAG  141
            |  ||||||||| || | ||||||||||||| |||| | ||||||||||||||||| |||
Sbjct  89   AGCTTGAAAGGCGCATTGATATTCACACGACTCGTT-CACGAGGGGGCAGTCTAGTCGAG  147

Query  142  GAGGTCATCGAGAAGCTTGAGAGATTCAAAGTACGTACGGTTAACATCTTGGTGGGAGGA  201
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  148  GAGGTCATGGAGAAGCTTGAGAGATTCAAAGTACGTACGGTTAACATCTTGGTGGGAGGA  207

Query  202  GAAGATGACGAACAGAAGAAATAA  225
            ||||||||||||| ||||||||||
Sbjct  208  GAAGATGACGAACCGAAGAAATAA  231



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7714028722


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5