BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36440.1 Length=225 Score E Sequences producing significant alignments: (Bits) Value Ahg482622 jgi|Araly1|482622|fgenesh2_kg.4__1682__AT2G36440.1 287 2e-77 > Ahg482622 jgi|Araly1|482622|fgenesh2_kg.4__1682__AT2G36440.1 Length=231 Score = 287 bits (155), Expect = 2e-77 Identities = 188/204 (92%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 23 CTAGCAGGTCAGACGAATTTCAAAGGCAGATAGATCATAAAGAGATGCCTCGAGATCACC 82 |||||||| || ||||| ||||||||| ||||||||||||||||||||||| |||||||| Sbjct 29 CTAGCAGGCCAAACGAAATTCAAAGGCTGATAGATCATAAAGAGATGCCTCAAGATCACC 88 Query 83 AAATTGAAAGGCACACTCATATTCACACGACGCGTTAC-CGAGGGGGCAGTCTAGTTGAG 141 | ||||||||| || | ||||||||||||| |||| | ||||||||||||||||| ||| Sbjct 89 AGCTTGAAAGGCGCATTGATATTCACACGACTCGTT-CACGAGGGGGCAGTCTAGTCGAG 147 Query 142 GAGGTCATCGAGAAGCTTGAGAGATTCAAAGTACGTACGGTTAACATCTTGGTGGGAGGA 201 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 148 GAGGTCATGGAGAAGCTTGAGAGATTCAAAGTACGTACGGTTAACATCTTGGTGGGAGGA 207 Query 202 GAAGATGACGAACAGAAGAAATAA 225 ||||||||||||| |||||||||| Sbjct 208 GAAGATGACGAACCGAAGAAATAA 231 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 7714028722 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5