BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36450.1
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934276 jgi|Araly1|934276|scaffold_402264.1 870 0.0
> Ahg934276 jgi|Araly1|934276|scaffold_402264.1
Length=602
Score = 870 bits (471), Expect = 0.0
Identities = 528/556 (95%), Gaps = 2/556 (0%)
Strand=Plus/Plus
Query 1 ATGCAAGGAACCTCCAAAGACAATGGCGGCCGCCACCCTTTGTACAGGGGAGTAAGGCAG 60
|||||||||||||||||||||||||||||||| ||||||||||||| |||||| || ||
Sbjct 28 ATGCAAGGAACCTCCAAAGACAATGGCGGCCGTCACCCTTTGTACAAGGGAGTGAGACAA 87
Query 61 CGAAAGAACTCAAACAAATGGGTTTCTGAGATCCGTGAGCCGAGAAAACCTAACCGTATC 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 88 CGAAAGAACTCAAACAAATGGGTTTCTGAGATCCGCGAGCCGAGAAAACCTAACCGTATC 147
Query 121 TGGTTAGGAACATTCTCTACCCCCGAGATGGCGGCAATAGCCTATGACGTGGCAGCTCTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 TGGTTAGGAACATTCTCTACCCCCGAGATGGCGGCAATAGCCTATGACGTGGCAGCTCTA 207
Query 181 GCCCTCAAAGGCAGTCAAGCTGAGCTCAACTTCCCAAACTCAGTTTCCTCTTTGCCTGCC 240
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 208 GCCCTTAAAGGCAGTCAAGCTGAGCTAAACTTCCCAAACTCAGTTTCCTCTTTGCCTGCC 267
Query 241 CCAACCTCCATGTCTCCAGCAGACATCCAAGCAGCA-GCCGCTTCGGCCGCTGCTGCTTT 299
||||||||||||||||||| |||||||||||||||| || ||||| ||||||||||||||
Sbjct 268 CCAACCTCCATGTCTCCAGGAGACATCCAAGCAGCATGC-GCTTCAGCCGCTGCTGCTTT 326
Query 300 TGGTGCTGCTAGGGATGCGATTGTTATGGCAAATAATAACAGCCAAACAAGTGGTGTGGC 359
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 327 TGGTGCTGCTAGGGATTCGATTGTTATGGCAAATAATAACAGCCAAACAAGCAGTGTGGC 386
Query 360 TTGCATGAATAGTAGTTATGATAATACAAATATGAATGGATTCATGGACGAGGATTTGGT 419
| | |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 387 TCGAATGAATGGTAGTTATGATAATACAAATATGAATGGGTTCATGGACGAGGATTTGGT 446
Query 420 ATTCGACATGCCTAATGTGCTCATGAATATGGCTGAAGGAATGCTTCTTAGCCCCCCTCG 479
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 447 ATTCGACATGCCTAATGTGCTCATGAATATGGCTGAAGGAATGCTTCTAAGCCCACCTCG 506
Query 480 TCCTACTGTCTTTGATGCTGCTTACGACGCTGATGGTTTTCCTGGAGGAGACGATTACTT 539
|| ||| |||||||||||||||||| |||||||||||| |||||| ||||||||||||
Sbjct 507 CCCCCCTGCCTTTGATGCTGCTTACGAAGCTGATGGTTTTACTGGAGCAGACGATTACTT 566
Query 540 GTGGAATTTTCCATGA 555
||||||||||||||||
Sbjct 567 GTGGAATTTTCCATGA 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20260617759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5