BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36460.1
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482625 jgi|Araly1|482625|fgenesh2_kg.4__1685__AT2G36460.1 1868 0.0
Ahg938186 jgi|Araly1|938186|scaffold_502377.1 1070 0.0
Ahg892283 jgi|Araly1|892283|Al_scaffold_0006_279 813 0.0
> Ahg482625 jgi|Araly1|482625|fgenesh2_kg.4__1685__AT2G36460.1
Length=1329
Score = 1868 bits (1011), Expect = 0.0
Identities = 1189/1273 (93%), Gaps = 19/1273 (1%)
Strand=Plus/Plus
Query 5 TCTTCTGGAAGCTACCATCA-CTCTCTCCTATATAACTCAAAATTCACcatcatcttcat 63
|||||||||||||||||||| | | ||||||||||| || | ||| ||||||| ||||
Sbjct 1 TCTTCTGGAAGCTACCATCACCCCCCTCCTATATAA-TC---A-TCATCATCATCATCAT 55
Query 64 catcatcatcatc-atcatcCTTTCTTTATCCAACTT-TCTTCACCAAATCGATTCTTCT 121
|||||||||| || || | || ||||||||||| || |||||| | |||||| ||||
Sbjct 56 CATCATCATCTTCAAT--TTCTCTCTTTATCCAA-TTCTCTTCATCGAATCGA---TTCT 109
Query 122 TCAACCATGTCTTCCTTCACCTCCAAATTCGCCGATGAGCTGATTGCTAACGCTGCTTAC 181
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 110 TCAACCATGTCTTGCTTCACCACCAAATTCGCCGATGAGCTGATTGCTAACGCTGCGTAC 169
Query 182 ATCGGAACACCTGGAAAAGGTATCCTTGCGGCAGATGAATCAACTGGTACTATTGGGAAA 241
||||| |||||||| ||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 170 ATCGGCACACCTGGGAAAGGTATCCTTGCGGCAGATGAATCAACTGGTACCA-TCGGAAA 228
Query 242 -CGTCTCGCTAGCATCAACGTTGAGAACGTTGAATCCAACAGACGTGCTCTTCGTGAGCT 300
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 229 GCGTCTAGCTAGCATCAACGTTGAGAACGTTGAATCGAACAGACGTGCTCTTCGTGAGCT 288
Query 301 TCTCTTCACTACTCCTGGAGCTCTTCCTTGCCTCAGTGGTGTTATCCTCTTTGAAGAAAC 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 289 TCTCTTCACTACTCCTGGAGCTCTTCCTTGTCTCAGTGGTGTTATCCTCTTTGAAGAGAC 348
Query 361 TCTTTACCAGAAGAGCTCTGATGGTACGCCTTTTGTTGATATGTTGAAGAGTGCAGGAGT 420
||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 349 TCTCTACCAGAAGAGCTCTAATGGTACGCCTTTTGTGGATATGTTGAAGAGTGCAGGAGT 408
Query 421 TTTGCCTGGTATTAAGGTTGATAAGGGTACCGTTGAGCTTGCTGGAACCAATGGTGAGAC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 CTTGCCTGGTATTAAGGTTGATAAGGGTACCGTTGAGCTTGCTGGAACCAATGGTGAGAC 468
Query 481 TACTACTCAAGGTCTTGATGGTCTTGGTGACCGTTGCAAGAAATACTACGAGGCTGGTGC 540
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 469 GACTACTCAAGGTCTTGATGGTCTTGGTGACCGTTGCAAGAAGTACTACGAGGCTGGTGC 528
Query 541 TCGTTTCGCCAAGTGGCGTGCGGTTCTTAAGATTGGTGTTAATGAGCCATCTCAGTTAGC 600
||||||||| |||||||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 529 TCGTTTCGCTAAGTGGCGTGCGGTTCTTAAGATTGGTGAGAATGAGCCCTCTGAGTTAGC 588
Query 601 TATCCATGAGAACGCTTATGGATTGGCTAGGTATGCTGTCATTTGTCAGGAGAACGGTCT 660
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 589 TATCCATGAGAACGCTTATGGATTGGCTAGGTACGCTGTCATTTGTCAGGAGAACGGTCT 648
Query 661 TGTGCCGATTGTGGAGCCTGAGATTCTTGTTGATGGCTCTCATGACATTCAGAAGTGTGC 720
|||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||
Sbjct 649 TGTGCCGATTGTGGAGCCTGAGATTCTTGTTGATGGTTCTCACGACATCCACAAGTGTGC 708
Query 721 CGCGGTGACAGAGCGTGTTCTTGCAGCTTGCTACAAGGCTCTGAGTGATCACCATGTCTT 780
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 709 CGCGGTGACAGAGCGTGTTCTTGCAGCTTGCTACAAGGCCCTGAGTGATCACCATGTCTT 768
Query 781 GCTAGAAGGAACACTCTTGAAACCTAACATGGTTACTCCAGGATCAGAGAGTGCGAAGGT 840
||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 769 GCTTGAAGGAACACTCTTGAAACCAAACATGGTGACTCCAGGATCAGAGAGTGCCAAGGT 828
Query 841 TGCACCAGAGGTGATTGCTGAGCACACTGTCCGTGCTCTTCAGAGGACAGTTCCAGCTGC 900
||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 829 TGCTCCAGAGGTGATTGCAGAGCACACTGTCCGTGCTCTTCAGAGGACTGTGCCAGCTGC 888
Query 901 TGTTCCAGCCATAGTGTTCTTGTCTGGTGGACAGAGCGAGGAAGAGGCGACAAGAAACCT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TGTTCCAGCCATAGTGTTCTTGTCTGGTGGACAGAGCGAGGAAGAGGCGACAAGAAACCT 948
Query 961 TAACGCGATGAACCAGTTGAAGACAAAGAAGCCTTGGTCGT-TGTCTTTCTCCTTTGGAA 1019
||||||||||||| ||||||||||||||||||||||||| | ||||||| ||||||||||
Sbjct 949 TAACGCGATGAACAAGTTGAAGACAAAGAAGCCTTGGTC-TCTGTCTTTTTCCTTTGGAA 1007
Query 1020 GGGCGTTGCAGCAGAGCACTTTGAAGACTTGGGGAGGAAAAGAGGAGAATGTGAAGAAGG 1079
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1008 GGGCGTTGCAACAGAGCACTTTGAAGACTTGGGGAGGAAAAGAGGAGAATGTGACCAAGG 1067
Query 1080 CTCAAGAAGCGTTCTTGGTCAGATGCAAAGCTAACTCTGAAGCAACACTTGGTGCTTACA 1139
| ||||||||||||||||| |||||||| || |||||||| || ||||||||||| ||||
Sbjct 1068 CGCAAGAAGCGTTCTTGGTTAGATGCAAGGCCAACTCTGAGGCCACACTTGGTGCCTACA 1127
Query 1140 AGGGTGATGCTAAGCTCGGTGAAGGTGCAGCTGAGAGCCTTCACGTTAAGGATTACAAGT 1199
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1128 AAGGTGATGCTAAGCTCGGTGAAGGTGCAGCAGAGAGCCTCCACGTTAAGGATTACAAGT 1187
Query 1200 ACTGAAGAAAGAGGCTGAGGATCGTAgtttttatatcatcgtttatgttcttgctttcac 1259
||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1188 ACTGATGAAAGAGGCTAAGGATCGTAGTTTTTATATCATCGTTGC-GTTCTTGCTTTCAC 1246
Query 1260 tttctctgttttt 1272
||| |||||||||
Sbjct 1247 TTTGTCTGTTTTT 1259
> Ahg938186 jgi|Araly1|938186|scaffold_502377.1
Length=1119
Score = 1070 bits (579), Expect = 0.0
Identities = 936/1108 (84%), Gaps = 26/1108 (2%)
Strand=Plus/Plus
Query 111 TCGAT-TCTTCTTC-AACCATGTCTTCCTTCACCTCCAAATTCGCCGATGAGCTGATTGC 168
||||| ||| | || || ||||||| |||||||| |||||||||||||||| |||| ||
Sbjct 3 TCGATCTCTCCGTCTAAACATGTCTGCCTTCACCAGCAAATTCGCCGATGAGTTGATCGC 62
Query 169 TAACGCTGCTTACATCGGAACACCTGGAAAAGGTATCCTT-GCGGCAGATGAATCAACTG 227
|||||||| |||||||| ||||||||||||||||| || || || ||||| || ||||
Sbjct 63 CAACGCTGCCTACATCGGCACACCTGGAAAAGGTAT-TTTGGCTGCTGATGAGTCCACTG 121
Query 228 GTACTATTGGGAAA-CGTCTCGCTAGCATCAACGTTGAGAACGTTGA-ATCCAACAGACG 285
|||| | | ||||| ||||| |||||||||||||||||||||||||| | ||||||||||
Sbjct 122 GTACCA-TCGGAAAGCGTCTAGCTAGCATCAACGTTGAGAACGTTGAGA-CCAACAGACG 179
Query 286 TGCT-CTTCGTGAGCTTCTCTTCACTACTCCTGGAGCTCTTCCTTGCCTCAGTGGTGTTA 344
| | || ||||||||||| ||||| | ||||| |||||||||||||| |||||||| |
Sbjct 180 T-ATCCTCCGTGAGCTTCTTTTCACCGCCCCTGGTGCTCTTCCTTGCCTTAGTGGTGTCA 238
Query 345 TCCTCTTT-GAAGAAACTCTTTACCAGAAGAGCTCTGATGGTACGCCTTTTGTTGATATG 403
|||| ||| ||||| ||||||||||| ||||| || ||||| | || ||||||||||||
Sbjct 239 TCCT-TTTCGAAGAGACTCTTTACCAAAAGAGTTCCGATGGCAAGCTTTTTGTTGATATC 297
Query 404 TTGAA-G-AGTGCAGGAGTT-TTGCCTGGTATTAAGGTTGATAAGGGTACCGTTGAGCTT 460
||||| | || | ||||||| || || ||||| |||||||| ||||||||| |||||||
Sbjct 298 TTGAAGGAAG-G-AGGAGTTCTT-CCCGGTATCAAGGTTGACAAGGGTACCATTGAGCTA 354
Query 461 GCTGGAACCAATGGTGAGACTACTACTCAAGGTCTTGATGGTCTTGGTGACCGTTGCAAG 520
||||||||||| |||||||| || |||||||||||||| |||||||||||||| ||||||
Sbjct 355 GCTGGAACCAACGGTGAGACCACCACTCAAGGTCTTGACGGTCTTGGTGACCGATGCAAG 414
Query 521 AAATACTACGAGGCTGGTGCTCGTTTCGCCAAGTGGCGTGCGGTTCTTAAGATTGGTGTT 580
|| |||||||| ||||||||||||||||||||||||||||| || || ||||| || |
Sbjct 415 AAGTACTACGAAGCTGGTGCTCGTTTCGCCAAGTGGCGTGCAGTCCTCAAGATCGGCGAG 474
Query 581 AATGAGCCATCTCAGTTAGCTATCCATGAGAACGCTTATGGATTGGCTAGGTATGCTGTC 640
|| ||||||||| || || | ||||||||||||||||| ||||| ||||| || |||||
Sbjct 475 AACGAGCCATCTGAGCTATCCATCCATGAGAACGCTTACGGATTAGCTAGATACGCTGTT 534
Query 641 ATTTGTCAGGAGAACGGTCTTGTGCCGATTGTGGAGCCTGAGATTCTTGTTGATGGCTCT 700
|| || || |||||||||||||| || ||||| ||||||||||| || |||||||| ||
Sbjct 535 ATCTGCCAAGAGAACGGTCTTGTACCCATTGTTGAGCCTGAGATCCTAGTTGATGGATCC 594
Query 701 CATGACATTCAGAAGTGTGCCGCGGTGACAGAGCGTGTTCTTGCAGCTTGCTACAAGGCT 760
|||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 595 CATGACATCCAGAAGTGTGCTGCTGTGACTGAGCGTGTTCTTGCAGCTTGCTACAAGGCT 654
Query 761 CTGAGTGATCACCATGTCTTGCTAGAAGGAACACTCTTGAAACCTAACATGGTTACTCCA 820
|| || || ||||| |||||||| || || || |||||||| ||||||||||| || ||
Sbjct 655 CTTAGCGACCACCACGTCTTGCTCGAGGGTACCCTCTTGAAGCCTAACATGGTGACACCC 714
Query 821 GGATCAGAGAGTGCGAAGGTTGCACCAGAGGTGATTGCTGAGCACACTGTCCGTGCTCTT 880
|||||||| || | |||||| |||| || || || ||||||||||| |||||||| |||
Sbjct 715 GGATCAGACAGCCCCAAGGTTTCACCTGAAGTCATCGCTGAGCACACCGTCCGTGCCCTT 774
Query 881 CAGAGGACAGTTCCAGCTGCTGTTCCAGCCATAGTGTTCTTGTCTGGTGGACAGAGCGAG 940
||||| || || ||||| |||||||||||||| || ||||| || ||||||||||| |||
Sbjct 775 CAGAGAACCGTCCCAGCAGCTGTTCCAGCCATTGTCTTCTTATCCGGTGGACAGAGTGAG 834
Query 941 GAAGAGGCGACAAGAAACCTT-AACGCGATGAACCAGTTGAAGACAAAGAAGCCTTGGTC 999
||||| || ||||| ||| || ||||| ||||||||||||||||| |||||||| |||||
Sbjct 835 GAAGAAGCTACAAGGAAC-TTGAACGCCATGAACCAGTTGAAGACCAAGAAGCCATGGTC 893
Query 1000 GTTGTCTTTCTCCTTTGGAAGGGCGTTGCAGCAGAGC-ACTTTGAAGACTTGGGGAGGAA 1058
||||||||||| || ||| | |||||||||||| | || |||||||| |||| ||| |
Sbjct 894 ATTGTCTTTCTCATTCGGACGTGCGTTGCAGCAGT-CTACCTTGAAGACATGGGCAGGCA 952
Query 1059 AAGAGGAGAATGTGAAGA-AGGCTCAAGAAGCGTTCT-TGGTCAGATGCAAAGCTAACTC 1116
||||||||||||| ||| || ||||||| ||||| | || | || ||||| || |||||
Sbjct 953 AAGAGGAGAATGTCAAGGCAG-CTCAAGAGGCGTTGTATG-TGAGGTGCAAGGCCAACTC 1010
Query 1117 TGAAGCAACACTTGGTGCTTACAAGGGTGATGCTAAGCTCGGTGAAGGTGCAGCTGAGAG 1176
|||||| ||||| || | ||||||||||| |||||||| ||||| || |||||||||||
Sbjct 1011 TGAAGCCACACTCGGAACCTACAAGGGTGACGCTAAGCTTGGTGATGGAGCAGCTGAGAG 1070
Query 1177 CCTTCACGTTAAGGATTACAAGTACTGA 1204
||||||||| || |||||||||||||||
Sbjct 1071 CCTTCACGTGAAAGATTACAAGTACTGA 1098
> Ahg892283 jgi|Araly1|892283|Al_scaffold_0006_279
Length=1080
Score = 813 bits (440), Expect = 0.0
Identities = 887/1099 (81%), Gaps = 45/1099 (4%)
Strand=Plus/Plus
Query 128 ATGTCTTCCTTCACCTCCAAATTCGCCGATGAGCTGATTGCTAACGCTGCTTACATCGGA 187
||||| | ||||| |||||||||||||||||||| || || || || |||||||||||
Sbjct 1 ATGTCGTGCTTCAAATCCAAATTCGCCGATGAGCTCATCGCCAATGCCGCTTACATCGGT 60
Query 188 ACACCTGGAAAAGGTATCCTTGCGGCAGATGAATCAACTGGTACTATTGGGAAACGTCTC 247
||||| || |||||||| || || || |||||||| || || || || || |||||| ||
Sbjct 61 ACACCAGGGAAAGGTATTCTCGCTGCTGATGAATCCACCGGAACAATCGGAAAACGTTTC 120
Query 248 GCTAGCATCAACGTTGAGAACGTTGAATCCAACAGACGTGCTCTTCGTGAGCTTC-TCTT 306
|| ||||| |||||||||||||||||||| |||||||||||||||||||||| || | ||
Sbjct 121 GCAAGCATTAACGTTGAGAACGTTGAATCAAACAGACGTGCTCTTCGTGAGC-TCTTGTT 179
Query 307 CACTACTCCTGGAGCTCTTCC-TTGCCTCAGTGGTGTTATCCTCTTTGAAGAAACTCTTT 365
||| ||||||||||||| ||| | | |||||||| | |||||||| |||||||| || |
Sbjct 180 CACCACTCCTGGAGCTC-TCCAATACATCAGTGGTATCATCCTCTTCGAAGAAACACTCT 238
Query 366 ACCAGAAGAGCT-C-TGATGGTACGCCTTTTGTTGATATGTTGAA-GAGTGCAGGAGT-T 421
||||||| | || | | | || | || ||||||||| | |||| || || |||||
Sbjct 239 ACCAGAA-AACTGCTTCA-GGGAAACCATTTGTTGATGTAATGAAGGA-AGCTGGAGTGC 295
Query 422 TTGCCTGGTATTAAGGTTGATAAGGGTACCGTTGAGCTTGCTGGAACCAATGGTG-AGAC 480
|| || ||||| || || ||||| || ||||||||||| ||||| || || || | | ||
Sbjct 296 TT-CCAGGTATCAAAGTCGATAAAGGAACCGTTGAGCTCGCTGGTACAAACGGCGNAAAC 354
Query 481 TACTACTCA-AGGTCTTGATGGTCTTGGTGACCGTTGCAAGAAATACTACGAGGCTGGTG 539
|| || || || |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 355 -ACAAC-CATTGGCCTTGATGGACTTGGTGACCGTTGCAAGAAATACTACGAAGCTGGTG 412
Query 540 CTCGTTTCGCCAAGTGGCGTGCGGTTCTTAAGATTGGTGTTAATGAGCCATCTCAGTTAG 599
| ||||| || ||||||||||| ||||| || ||||| | |||||||| ||| |||| |
Sbjct 413 CACGTTTTGCTAAGTGGCGTGCTGTTCTCAAAATTGGAGACAATGAGCCTTCTGAGTTGG 472
Query 600 CTATCCATGAGAACGCTTATGGATTGGCTAGGTATGCTGTCATTTGTCAGGAGAACGGTC 659
||||||||||||| ||||| || || || || ||||| || ||||| || ||||| ||||
Sbjct 473 CTATCCATGAGAATGCTTACGGTTTAGCAAGATATGCAGTTATTTGCCAAGAGAATGGTC 532
Query 660 TTGTGCCGATTGTGGAGCCTGAGATTCTTGTTGATGGCTCTCATGACATTCAG-AAGTGT 718
|||| || ||||| || || ||||||||||||||||| ||||| |||||| || || |||
Sbjct 533 TTGTCCCCATTGTTGAACCAGAGATTCTTGTTGATGGATCTCACGACATTGAGCAA-TGT 591
Query 719 GCCGCGGTGACAGAGCGTGTTCTTGCAGCTTGCTACAAGGCTCTGAGTGATCACCATGTC 778
|| || || || || |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 592 GCTTATGTTACGGAACGAGTTCTTGCGGCTTGTTACAAGGCTCTGAGTGATCACCATGTG 651
Query 779 TTGCT-AGAAGGAACACTCTTGAAACCTAACATGGTTACTCCAGGATCAGAGAGTG---C 834
| || ||||||||||||||||||||| ||||||||||||||||| ||||| |||| |
Sbjct 652 AT-CTTAGAAGGAACACTCTTGAAACCAAACATGGTTACTCCAGGTTCAGACAGTGGTTC 710
Query 835 GAAGGTTGCACCAGAGGTGATTGCTGAGCACACTGTCCGTGCTCTT-CAGAGGACAGTTC 893
|| ||| |||||| ||||| || |||||||| ||||||||| || |||||||| ||||
Sbjct 711 TAAAGTTAAACCAGAAGTGATCGCCGAGCACACGGTCCGTGCT-TTACAGAGGACGGTTC 769
Query 894 CAGCTGCTGTTCCAGCCATAGTGTTCTTGTCTGGTGGACAGAGCGAGGAAGAGGCGACAA 953
| || |||||||| ||| | |||||||||||||| |||||||| || ||||| || ||
Sbjct 770 CTGCAGCTGTTCCGGCCGTTGTGTTCTTGTCTGGAGGACAGAGTGAAGAAGAAGCAACTG 829
Query 954 -GAAACCTTAACGCGATGAACCAGTTGAA-GACAAAGAAGCCTTGGT-CGTTGTC-TTTC 1009
||| | | ||||| || || ||| | || | || ||| || ||| | ||| | |||
Sbjct 830 TGAATC-TAAACGCCATTAATCAGCTCAAAGGGAA-GAAACCATGGAGC-TTGACGTTT- 885
Query 1010 TCCTTTGGAAGGGCG-TTGCAGCAGAGCACTTTGAAGACTTGGGGAGGAAAAGAGGAGAA 1068
|| | |||| | ||| || || ||||| || | ||| |||||||||| |||||||||||
Sbjct 886 TCGTATGGACGCGCGCTT-CAACAGAGTACACTCAAGGCTTGGGGAGGTAAAGAGGAGAA 944
Query 1069 TGT-GAAGAAGGCTCAAGAAG-CGTTCTTGG-TCAGATGCAAAG-CTAACTCTGAAGCAA 1124
| | || |||||||||| ||| ||||||||| || || || ||| |||||||||||||||
Sbjct 945 TTTTGA-GAAGGCTCAA-AAGGCGTTCTTGGCTC-GA-GCCAAGGCTAACTCTGAAGCAA 1000
Query 1125 CACTTGGTG-CTTACAAGGGTGATGCTAAGCTCGGTGAAGGTGCAGCTGAGAGCCTTCAC 1183
| ||||||| || |||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 1001 CCCTTGGTGGCT-ACAAGGGTGATGCTCAGCTCGGTGAAGGTGCTTCCGAGAGCCTTCAC 1059
Query 1184 GTTAAGGATTACAAGTACT 1202
|| || || ||||| ||||
Sbjct 1060 GTCAAAGACTACAAATACT 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53554884470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5