BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36470.1
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482626 jgi|Araly1|482626|fgenesh2_kg.4__1686__AT2G36470.1 1940 0.0
Ahg901493 jgi|Araly1|901493|Al_scaffold_0004_2143 617 6e-176
Ahg927543 jgi|Araly1|927543|scaffold_203104.1 355 5e-97
> Ahg482626 jgi|Araly1|482626|fgenesh2_kg.4__1686__AT2G36470.1
Length=1537
Score = 1940 bits (1050), Expect = 0.0
Identities = 1278/1383 (92%), Gaps = 35/1383 (3%)
Strand=Plus/Plus
Query 256 TCCATTTCTTCTCTG---CAACTTCCGTACCAAAAAATACAT-AAAGCCCTAACT-A-A- 308
||||||||||||||| ||||||||||||| |||||| | ||| |||||||| | |
Sbjct 171 TCCATTTCTTCTCTGCAACAACTTCCGTACC--CAAATACTTAAAAACCCTAACTAATAC 228
Query 309 TATTATTTCTCCACCAAGTTTCTTTATCTTTTAGTTTCCCGGT--AAAAAATCTCTCTGT 366
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 229 TATTATTTCTCCACCAGGTTTCTTTATCTTTTAGTTTCCCGGTAAAAAAAATCTCTCTGT 288
Query 367 CATG--TCTTATGTTCTTCCACGTCGTTCC-TAATCTCCCAAGACAGAATCTCTAAACTT 423
|||| |||||||||||||||||||||||| |||||| || | |||||||||||||||||
Sbjct 289 CATGTCTCTTATGTTCTTCCACGTCGTTCCTTAATCT-CCTA-ACAGAATCTCTAAACTT 346
Query 424 CATTTTGCTCCTT-TTCCAC-ACAAAACTTTCTCTCCCTCCAAAGACCACAAAAAA-TGT 480
|| |||||||||| || | | |||||||| ||||||||||||||||| |||||| |||
Sbjct 347 CA-TTTGCTCCTTCTTTTTCTA-AAAACTTTGTCTCCCTCCAAAGACCA-AAAAAATTGT 403
Query 481 TCTTCCTTCCTTCAACTTCAAGTATCTCTCTTTATTCACACGTATAGCATCCAAAACCAA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 404 TCTTCCTTCCTTCAACTTCAAGTATCTCTCTTTATTCACACGTATAGCATCCAAAACC-A 462
Query 541 AAATCTATAACCTTTTCCTCTGTAAAGTTTCTTCCTTTCTAACCTTCCC--GAGaaaaaa 598
|||||||||||| |||||||||||||||||||||||||||| | ||||| || ||||||
Sbjct 463 AAATCTATAACCATTTCCTCTGTAAAGTTTCTTCCTTTCTATCTTTCCCGGGAAAAAAAA 522
Query 599 aCA-AACCCTTTCTGTTAGAAAACCATGAGAGGTCTCGCGGCTTGTTACAGTGAACACGC 657
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 AAACAACCCTTTCTGTTAGAAAACCATGAGAGGTCTCGCGGCTTGTTACAGTGAACACGC 582
Query 658 CATTAAAGTATCAGATACATATTGTTCAGGTCCATCGAATCATTCCTATATATCTCCGAC 717
|||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 583 CATTAAAGTATCAGATGCATATTGTTCAGGTCCATCAAATCATTCCTACATATCTCCGAC 642
Query 718 ATTACCTCCTTCAATCCCCGACACAGTAACCACCACTTATAGATCCAATCTCCCATCTTC 777
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 643 ATTACCTCCTTCAATCCCCGACACAGTAACCACCACTTATAAATCCAATCTCCCTTCTTC 702
Query 778 CGACAAACCCGTCTCTGTTTCACTCACCTGGTCGGATAATCTCACCGTCGTCATCTCAAC 837
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 CGACAAACCCCTCTCTGTTTCACTCACCTGGTCGGATAATCTCACCGTCGTCATCTCAAC 762
Query 838 GCCGCCGAAATCATACTCTGTTTCACTCAGAAAACCTAAAGGATCAAGAAAGTTGACTTC 897
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 763 GCCGCCGAAATCATACTCTGTTTCTCTCAGGAAACCTAAAGGATCAAGAAAGTTGACTTC 822
Query 898 TTCCTCCGGTTCACTCAACGCCGAGATCCTCTGGGATCTATCGGAAGCAGAGTACGAAAA 957
||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 823 TTCCTCCGGTTCACTCAACGCGGAGATTCTTTGGGATCTATCGGAAGCAGAGTACGAAAA 882
Query 958 CAACGGACCTGAACCAATAAGAAGATTCTTCGTCGTCGTCGTTGTAAATTCCGAGATTAC 1017
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 883 CAACGGACCTGAACCAATAAGAAGATTCTTCGTCGTCGTCGTGGTGAATTCCGAGATTAC 942
Query 1018 CCTCGGAGTCGGCGACGTTGACCACGAGCGAGACACGTCATCATCGTCGTCGTGGCGAGT 1077
||| || ||||||||||||||| | |||||||||||||||||||||||| | | |||||
Sbjct 943 GCTCAGAATCGGCGACGTTGACCGCAAGCGAGACACGTCATCATCGTCGT-G-G-CGAGT 999
Query 1078 CTCAAAAACGGAGAGATTCTCTGGAACTTGTTGGCTCACGACGAAAGCTCAATTCTCCGA 1137
||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 1000 CTCAAAAACAGAGAGATTCTCAGGGACTTGTTGGCTCACGACGAAGGCTCAATTCTCCGA 1059
Query 1138 CGTCGGAAGGAAACACGAGATACAGATTCAATGCGGCggaggaggaggaggaggaggaga 1197
||| |||| ||||||||||| ||||||||||||| ||| || ||||||||||||| | |
Sbjct 1060 CGTTGGAACTAAACACGAGATTCAGATTCAATGCGACGGCGGCGGAGGAGGAGGAG-A-A 1117
Query 1198 ggaAGGGTATTTATGGAAAGTGAAAAGTCCTGAAACGATGTCGGTTTATGTTGATAAGAG 1257
| ||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1118 G-AAGGGCATTTATGGAAATTGAAAAGTCCTGAAACGATGTCGGTTTATGTGGATAAGAG 1176
Query 1258 GAAAGTGTTTTCGGTGAAGAAGCTTAAGTGGAACTTTAGAGGGAATCAAACCATGTTTTT 1317
|||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||| ||
Sbjct 1177 GAAAGTGTTTTCGGTGAAGAAGATAAAGTGGAATTTTAGAGGGAATCAAACGATGTTCTT 1236
Query 1318 CGATGGAATGCTTATAGACATGATGTGGGATTTACACGACTGGTTCTACAAAGAAACGTT 1377
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1237 CGATGGAATGCTTATAGACATGATGTGGGATTTACACGACTGGTTTTACAAAGAAACGGC 1296
Query 1378 GTCGTCTGT-TTCGACTAGTTCATCGTCTAAAACGGCGTCGTCGTCATCGTCTTCTTCAA 1436
||||||| | |||||||| ||| ||||| ||||| ||||||||||||||||||||||| |
Sbjct 1297 GTCGTCT-TCTTCGACTACTTCGTCGTCCAAAACTGCGTCGTCGTCATCGTCTTCTTCGA 1355
Query 1437 CTTCATCGTCTACTCCTCCGTGTGCTGTGTTTATGTTTAGGAGGAGGAGTGGTTTGGATA 1496
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1356 CTTCATCGTCTTCTCCTCCGTGTGCTGTGTTTATGTTTCGGAGGAGGAGTGGTTTGGATA 1415
Query 1497 GTAGATTATGGATTGATGAAGATGAACAAGAGAGTGAGATGAAGAAGAATATTGGTTCTA 1556
||||||||||||||||||||||||| |||||||| ||||||||||||| ||| |||| |
Sbjct 1416 GTAGATTATGGATTGATGAAGATGAGGAAGAGAGTAAGATGAAGAAGAAGATTAGTTCAA 1475
Query 1557 GAGATGAGAAACATTCGTTTTCACTTATCATTTGTGCCTCTAAAAAGTGACCAAATAAAC 1616
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||
Sbjct 1476 GAGATGAGAAACATTCGTTTTCTCTTATCATTTGTGCCTCTAAAAAGTGAACAAAAAAA- 1534
Query 1617 AAA 1619
|||
Sbjct 1535 AAA 1537
Score = 63.9 bits (34), Expect = 4e-09
Identities = 40/43 (93%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1 TGGTACAAAATATCTAAATTTCATTTCTGCAAATCTCTTGTCG 43
|||||||||||||||||||||||||||||| || ||||||||
Sbjct 1 TGGTACAAAATATCTAAATTTCATTTCTGCCCATTTCTTGTCG 43
> Ahg901493 jgi|Araly1|901493|Al_scaffold_0004_2143
Length=483
Score = 617 bits (334), Expect = 6e-176
Identities = 409/445 (92%), Gaps = 6/445 (1%)
Strand=Plus/Plus
Query 877 AGGATCAAGAAAGTTGACTTCTTCCTCCGGTTCACTCAACGCCGAGATCCTCTGGGATCT 936
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 45 AGGATCAAGAAAGTTGACTTCTTCCTCCGGTTCACTCAACGCGGAGATTCTTTGGGATCT 104
Query 937 ATCGGAAGCAGAGTACGAAAACAACGGACCTGAACCAATAAGAAGATTCTTCGTCGTCGT 996
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 105 ATCGGAAGCAGAGTACGAAAACTACGGACCTGAACCAATAAGAAGATTCTTCGTCGTCGT 164
Query 997 CGTTGTAAATTCCGAGATTACCCTCGGAGTCGGCGACGTTGACCACGAGCGAGACACGTC 1056
||| || |||||||||||||| ||| || ||||||||||||||| | |||||||||||||
Sbjct 165 CGTGGTGAATTCCGAGATTACGCTCAGAATCGGCGACGTTGACCGCAAGCGAGACACGTC 224
Query 1057 ATCATCGTCGTCGTGGCGAGTCTCAAAAACGGAGAGATTCTCTGGAACTTGTTGGCTCAC 1116
||||||||||| | | |||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 225 ATCATCGTCGT-G-G-CGAGTCTCAAAAACAGAGAGATTCTCAGGGACTTGTTGGCTCAC 281
Query 1117 GACGAAAGCTCAATTCTCCGACGTCGGAAGGAAACACGAGATACAGATTCAATGCGGCgg 1176
|||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||| |||
Sbjct 282 GACGAAGGCTCAATTCTCCGACGTTGGAACTAAACACGAGATTCAGATTCAATGCGACGG 341
Query 1177 aggaggaggaggaggaggagaggaAGGGTATTTATGGAAAGTGAAAAGTCCTGAAACGAT 1236
|| || |||||||||| | || ||||||||||||||||| |||||||||||||||||||
Sbjct 342 CGGCGGGGGAGGAGGAG-A-AG-AAGGGTATTTATGGAAATTGAAAAGTCCTGAAACGAT 398
Query 1237 GTCGGTTTATGTTGATAAGAGGAAAGTGTTTTCGGTGAAGAAGCTTAAGTGGAACTTTAG 1296
|||||||||||| |||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct 399 GTCGGTTTATGTGGATAAGAGGAAAGTGTTTTCGGTGAAGAAGATAAAGTGGAATTTTAG 458
Query 1297 AGGGAATCAAACCATGTTTTTCGAT 1321
|||||||||||| ||||| ||||||
Sbjct 459 AGGGAATCAAACGATGTTCTTCGAT 483
> Ahg927543 jgi|Araly1|927543|scaffold_203104.1
Length=425
Score = 355 bits (192), Expect = 5e-97
Identities = 228/245 (93%), Gaps = 3/245 (1%)
Strand=Plus/Plus
Query 890 TTGACTTCTTCCTCCGGTTCACTCAACGCCGAGATCCTCTGGGATCTATCGGAAGCAGAG 949
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 145 TTGACTTCTTCCTCCGGTTCACTCAACGCGGAGATTCTTTGGGATCTATCGGAAGCAGAG 204
Query 950 TACGAAAACAACGGACCTGAACCAATAAGAAGATTCTTCGTCGTCGTCGTTGTAAATTCC 1009
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 205 TACGAAAACAACGGACCTGAACCAATAAGAAGATTCTTCGTCGTCGTCGTGGTGAATTCC 264
Query 1010 GAGATTACCCTCGGAGTCGGCGACGTTGACCACGAGCGAGACACGTCATCATCGTCGTCG 1069
|||||||| ||| || ||||||||||||||| | |||||||||||||||||||||||| |
Sbjct 265 GAGATTACGCTCAGAATCGGCGACGTTGACCGCAAGCGAGACACGTCATCATCGTCGT-G 323
Query 1070 TGGCGAGTCTCAAAAACGGAGAGATTCTCTGGAACTTGTTGGCTCACGACGAAAGCTCAA 1129
| |||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||
Sbjct 324 -G-CGAGTCTCAAAAACAGAGAGATTCTCAGGGACTTGTTGGCTCACGACGAAGGCTCAA 381
Query 1130 TTCTC 1134
|||||
Sbjct 382 TTCTC 386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61058662735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5