BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36485.1
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482628 jgi|Araly1|482628|fgenesh2_kg.4__1688__AT2G36485.1 1116 0.0
> Ahg482628 jgi|Araly1|482628|fgenesh2_kg.4__1688__AT2G36485.1
Length=805
Score = 1116 bits (604), Expect = 0.0
Identities = 758/828 (92%), Gaps = 27/828 (3%)
Strand=Plus/Plus
Query 2 CAACCCTAATTGATCGGAGATTGTCCAAACTCTCTGACATTTTTGCCGAATTCGAAGCAT 61
|||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 1 CAACCCTAATTGATCGGAGATTGTCCAAACTCTCTGCCA--TTT------TTCGAAGCAT 52
Query 62 TCCTTCTATCTTCTCCGTCTTCTTCGCAGAATCGCGTTATGCATCTCAATTTTTAGATTG 121
||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 53 CCCTCCTATCATCTCCGTCTTCTTCGCAGAATCGCGTTATGCATCTCAATTTGTAGATTG 112
Query 122 TAACTTAGGGTTACTGATTGTTGTAATGCTCTGAATTCCCCTCTAACGAGGATTTGTTGT 181
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 113 TAACTTAGGGTTACTGATTGCTGTAATGCTCTGAGTTCCCCTCTAACGAGGATTTGTTGT 172
Query 182 CACTGCAATCGATTTTTGCCGATTAGGTTTAATTTAGGGCATTATTTGCGTACCTCTTGT 241
|||||||||||| |||| | |||||||||||||||| |||||| ||||||||||||||||
Sbjct 173 CACTGCAATCGA-TTTTACGGATTAGGTTTAATTTAAGGCATTTTTTGCGTACCTCTTGT 231
Query 242 ATTGTATAGTTCTTTGGAATGGAGAATCCTCGTAGACCGTTTGATAGATCCAGAGATCCA 301
||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||
Sbjct 232 GTTGTATAGTTCTTTGAAATGGAGAATTCGCGTAGACCGTTTGATAGATCCAGAGATCCA 291
Query 302 GGTCCGATGAAGAAACCCAGGCTCAGCGAGGAATCAATCCGGCCTGTTAATTCCAACGCG 361
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 292 GGTCCGATGAAGAAACCTAGGCTCAGCGAGGAATCAATCCGGCCTGTGAATTCCAACGCG 351
Query 362 CGGCAGTTTTTGTCGCAGAGAACGCTTGGTACGGCTACGGCGGTGACAGTGCCACCTGCT 421
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 352 CGGCAGTTTTTGTCGCAGAGAACGCTTGGTACGGCTACGGCGGTGACAGTACCACCGGCG 411
Query 422 TCGTCAAGGTTTCGAGTTAGTGGTAGAGAAACTGAGAGTAGTATTGTCA-GTGATCCGAG 480
|||||||| ||||||||| |||| ||||||| |||||||||||||| || ||||||||||
Sbjct 412 TCGTCAAGATTTCGAGTTGGTGGCAGAGAAATTGAGAGTAGTATTG-CAAGTGATCCGAG 470
Query 481 CCGAGAGGCTTACCAGCCACAGCCGGTTCATCCACATTATGAGCTTGTGAATCAGTACAA 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 471 CCGAGAGGCTTACCAGCCACAGCCGGTTCATCCACATTACGAGCTTGTGAATCAGTACAA 530
Query 541 GTCTGCACTGGCTGAGCTCACTTTCAACTCGAAGCCGATAATAACGAACCTTACAATAAT 600
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 531 GTCTGCACTTGCTGAGCTCACTTTCAACTCGAAGCCAATAATAACGAACCTTACAATAAT 590
Query 601 TGCTGGAGAGAATGTTCATGCTGCTAAAGCCGTCGTAACCGCCATTTGCAACAACATCCT 660
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 591 TGCTGGAGAGAATGTTCATGCTGCTAAAGCCGTCGTAGCCACCATTTGCAACAACATCCT 650
Query 661 CGAGGTGAACACCCAGTTTTCATGCCCACTGTTTT-GTTGTTATAATCCGTGCTTTAGTT 719
||||||||||||||||||||||||||||||||| | |||||| | | | || ||
Sbjct 651 CGAGGTGAACACCCAGTTTTCATGCCCACTGTTATAGTTGTTGTTGTTA-TACTCC-GTG 708
Query 720 CTCAAATTCTTGTTTGAGTAATAATAATTGTACGATATAAGGGGAAT-AAGGTAAAAGGT 778
||| | || |||||| |||| | |||||||||||||| ||| |||||||| |||
Sbjct 709 CTCTAGTT---GTTTGACTAAT--T----GTACGATATAAGGG-AATTAAGGTAAA-GGT 757
Query 779 GGTGGTTGAGATTTGTGTTATCTGTAT-ACGAGGTTCAATGAGAAATT 825
|||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 758 GGTGGTAGAGATTTGTGTTATCTGTATTACGAGGTTCAATGAGAAATT 805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31108300272
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5