BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36500.1
Length=1845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482630 jgi|Araly1|482630|fgenesh2_kg.4__1690__AT2G36500.1 2695 0.0
Ahg485669 jgi|Araly1|485669|fgenesh2_kg.5__1661__AT3G52950.1 970 0.0
> Ahg482630 jgi|Araly1|482630|fgenesh2_kg.4__1690__AT2G36500.1
Length=1799
Score = 2695 bits (1459), Expect = 0.0
Identities = 1674/1777 (94%), Gaps = 18/1777 (1%)
Strand=Plus/Plus
Query 85 AGAAAGTTTCAAACTTTTCCAAAT-CTTCAACGCCATTGAAATAGCATCTCACAGATT-- 141
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct 25 AGAAAGATTCAAACTTTTCCAAATCCTTCAACGCCATTGAAATAGCATTTCACAGGTTAG 84
Query 142 GATGAGTCATTAAAGACCGTCAATATGACGACTACTCCAACTTCATCTGGGAGAAGAAGC 201
| || || |||||||| | |||||||||||||||| ||||||||||||||||| ||||||
Sbjct 85 GGTG-GTGATTAAAGA-CTTCAATATGACGACTACACCAACTTCATCTGGGAGGAGAAGC 142
Query 202 ATTTCAAGTATAAGGAGAACATCATCAGCTTCTAAGAAACCTGTTCTTCAATCAGAAGAG 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 ATTTCAAGTATAAGGAGAACATCATCAGCTTCTAAGAAACCTGTTCTTCAATCAGAAGAG 202
Query 262 AGCGAAAGCGGAAGCGGAAGCATTAACGAGAACACCTCCAAACCTGATTCACCTCTTGCT 321
||||||||||||||||||||| | | ||||||| ||||||||| |||||||||||||||
Sbjct 203 AGCGAAAGCGGAAGCGGAAGCCTGAGTGAGAACATCTCCAAACCCGATTCACCTCTTGCT 262
Query 322 CAACCGGTTTCTGATGGCGAGAGAACAGTCAAGAAGCTACGGTTATCCAAAGCTCTCACT 381
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 263 CAACCGGTTTCTGATGGCGAGAGAACTGTCAAGAAGCTACGGTTATCCAAAGCTCTCACT 322
Query 382 ATTAATGAGGGAACCACTGTCTTTGATGCTTGTCGAAGGATGGCTGCTAGGCGTGTTGAT 441
||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||
Sbjct 323 ATTAATGAGGGAACCACCGTCTTTGATGCTTGTCGAAGGATGGCGGCTCGGCGTGTTGAT 382
Query 442 GCGGTTTTGTTAACTGATTCAAGCGCTCTTCTTTCCGGTATTGTTACAGACAAAGATATA 501
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 383 GCGGTTTTGTTGACTGATTCAAGCGCTCTTCTTTCCGGTATTGTTACAGACAAGGATATA 442
Query 502 GCCACGAGGGTGATTGCAGAAGGGTTGAGACCAGAGCATACTCTGGTGTCTAAAGTCATG 561
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 443 GCCACAAGGGTGATTGCAGAAGGGTTGAGACCAGAGCACACTCTGGTGTCTAAAGTCATG 502
Query 562 ACAAGGAATCCCATTTTTGTCACATCTGATTCACTTGCCATTGAGGCTCTTCAGAAGATG 621
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 503 ACAAGGAATCCCATTTTTGTCACATCAGATTCACTCGCCATCGAGGCTCTTCAGAAGATG 562
Query 622 GTTCAGGGAAAGTTCAGGCACTTGCCTGTTGTAGAGAATGGTGAAGTCATTGCTTTGTTG 681
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 563 GTTCAGGGAAAGTTCAGGCACTTGCCTGTTGTAGAGAATGGTGAAGTCATTGCTCTCTTG 622
Query 682 GATATCACAAAGTGTCTCTATGATGCTATCTCACGGATGGAAAAAGCTGCAGAGCAAGGA 741
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 623 GATATCACAAAGTGCCTCTATGATGCTATCTCTCGGATGGAAAAAGCCGCAGAGCAAGGA 682
Query 742 AGTGCTTTAGCTACTGCAGTGGAAGAACGGCATTGGGGAAGTGGAAACTTCGCTTTCATT 801
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 683 AGTGCTTTAGCCACTGCAGTGGAAGAACGACATTGGGGAAGTGGAAATTTCGCTTTCATC 742
Query 802 GATACATTGAGAGAGAGGATGTTCAAGCCTGCATTGTCAACTATAGTCACTGAGAATACC 861
|| |||||||| ||| |||||||||||||||| |||||||| ||||||| ||||||||||
Sbjct 743 GACACATTGAGGGAGCGGATGTTCAAGCCTGCGTTGTCAACGATAGTCAGTGAGAATACC 802
Query 862 AAAGTTGCACTTGTATCAGCATCAGATCCTGTCTTTGTAGCTTCCAAAAAGATGCGTGAT 921
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 803 AAAGTTGCACTCGTATCAGCATCAGATCCTGTCTTTGTAGCTTCCAAAAGGATGCGGGAT 862
Query 922 TTGCGGGTTAACTCTGTGATCATCGCGGTTGGGAACAAGATTCATGGGATTTTAACTTCA 981
||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||
Sbjct 863 TTGCGGGTTAATTCTGTGATCATCGCTGTTGGGAACAAGATTCACGGGATTCTAACTTCA 922
Query 982 AAGGACATTCTCATGAGAGTTGTAGCACAGAATCTATCTCCTGAGCTGACTCTTGTTGAA 1041
||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 923 AAGGACATTTTGATGAGAGTTGTGGCACAGAATCTATCTCCTGAGCTGACTCTTGTTGAA 982
Query 1042 AAGGTAATGACGCCAAATCCTGAATGTGCATCAATAGAGACAACAATCCTCGATGCATTG 1101
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 983 AAGGTAATGACACCAAATCCTGAATGTGCATCAATAGAGACAACAATCCTAGATGCATTG 1042
Query 1102 CATATAATGCATGATGGGAAGTTCTTGCATCTGCCGGTTTTCGATAAAGACGGATTCGCC 1161
||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 1043 CATATAATGCACGATGGGAAGTTTTTGCATCTTCCGGTTTTAGATAAAGACGGATTCGCC 1102
Query 1162 GTAGCTTGTTTAGACGTGCTGCAGATAACTCACGCAGCTATATCAACGGTTGAGAACAAC 1221
||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||
Sbjct 1103 GTAGCTTGTTTAGACGTGCTGCAGATAACGCATGCCGCTATTTCAACGGTTGAGAACAAC 1162
Query 1222 AGCTCAGGAGCTGTTAACGATATGGCGAATACAATGATGCAAAAGTTCTGGGACTCAGCT 1281
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1163 AGCTCAGGAGCTGTTAACGAGATGGCGAATACGATGATGCAAAAGTTCTGGGACTCAGCT 1222
Query 1282 CTTGCGTTAGAACCACCTGAGGATTACGAAACACACAGCGATATGTCAGCAATGCTGATA 1341
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1223 CTTGCGTTAGATCCACCCGAGGATTACGAAACACACAGCGATATGTCAGCGATGCTGATA 1282
Query 1342 AATTCAGAAGGGAAGCAGTCGTGTCCATCACAAGGACTTGTGAGCTCGTTTGCTTTCAAA 1401
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1283 AATTCAGAAGGGAAGCAGTCATGTCCATCACAAGGACTTGTGAGCTCGTTTGCTTTCAAA 1342
Query 1402 TTCGAAGATCGTAAAGGGAGAGTACAGCGGTTTAACTCAACTGGTGAGAGTTTTGAAGAG 1461
|||||||||||||||||||||||||| ||||||||||| || ||||||||| ||||||||
Sbjct 1343 TTCGAAGATCGTAAAGGGAGAGTACATCGGTTTAACTCGACGGGTGAGAGTCTTGAAGAG 1402
Query 1462 CTGATGAGTGTTGTGATGCAAAGATGTGAAGCGGATTCAGGCCTTCAGATAATGTACCAA 1521
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1403 CTGATGAGTGTTGTGATGCAAAGATGCGAAGCGGATTCAGGCCTTCAGATAATGTACCAA 1462
Query 1522 GATGATGAAGGTGATAAAGTTTTGATTAGTAGGGACAGTGATCTTGTTGCTGCTGTAACT 1581
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1463 GATGATGAAGGTGATAAAGTTTTGATTAGTAGGGACAGTGATCTTGTTACTGCTGTAACT 1522
Query 1582 TTTGCTAGGTCTTTGGGGCAAAAGGTTTTGCGACTACATCTTGATTTTACCGAGACAATT 1641
||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 1523 TTTGCCAGGTCTTTGGGGCAAAAGGTTTTGCGACTGCACCTTGATTTCACCGAGACAATG 1582
Query 1642 GCTCCTCTTGAGACGATTGCAGATTTGTCCGAGGGAAATGGCGGTTGTGTTTGGTGGCAG 1701
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1583 GCTCCTCTTGAGACGATTTCAGATTTGTCCGAGGGAAATGGCGGTTGTGTTTGGTGGCGG 1642
Query 1702 ACTGGCGTCTTGGCTGGTGCTATTGTCCTAACGAGCATAGGTTTATTTGTTTACTTAAAA 1761
||||||||| ||||||| ||||| ||||||||||||||||||||| |||||||||| |||
Sbjct 1643 ACTGGCGTCATGGCTGGGGCTATCGTCCTAACGAGCATAGGTTTACTTGTTTACTTGAAA 1702
Query 1762 CGTTCCAAGAAATGATATGTTGAATGGGAACTTAATTGTATTACA--CT------GTTAC 1813
||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1703 CGTTCCAAGAAATGATATGTTGAATGGGAACTTAATTGTATTACAAACTTACACTGTTAC 1762
Query 1814 TTTGTCTTTTTATT-----CGATTCACATTGCAAAGC 1845
||||||||||| || ||||||||||||||||||
Sbjct 1763 TTTGTCTTTTTTTTTTTTACGATTCACATTGCAAAGC 1799
> Ahg485669 jgi|Araly1|485669|fgenesh2_kg.5__1661__AT3G52950.1
Length=2100
Score = 970 bits (525), Expect = 0.0
Identities = 1101/1368 (80%), Gaps = 83/1368 (6%)
Strand=Plus/Plus
Query 330 TTCTGATGGCGAGAGAACAGTCAAGAAGCTACGGTTATCCAAAGCTCTCACTATTAATGA 389
|||| |||| ||||||||||| |||||||| |||||||| ||||||||||||||| |||
Sbjct 357 TTCTAATGGAGAGAGAACAGTGAAGAAGCTTCGGTTATCGAAAGCTCTCACTATTCCTGA 416
Query 390 GGGAACCACTGTCTTT-GATGCTTGTCGAAGGATGGCTGCTAGGCGTGTTGATGCGGT-T 447
||||| ||||| ||| |||||||||||||||||||| ||| ||||||||||||| | |
Sbjct 417 AGGAACTACTGT-TTTCGATGCTTGTCGAAGGATGGCGGCTCGGCGTGTTGATGC-TTGT 474
Query 448 TTGTTAACTGATTCAAGCGCTCTTCTTTCCGGTATTGTTACAGACAAAGATATAGCCACG 507
||||| ||||||||||| || ||||||||||| |||||||| || |||||| | || ||
Sbjct 475 TTGTTGACTGATTCAAGTGCGCTTCTTTCCGGGATTGTTACTGATAAAGATGTTGCTACA 534
Query 508 AGGGTGATTGCAGAAGGGTTGAGACCAGAGCATACTCTGGTGTCTAAAGTCATGACAAGG 567
|| |||||||| |||||||||||||| || || ||| |||| ||||| || ||||| |||
Sbjct 535 AGAGTGATTGCTGAAGGGTTGAGACCGGATCAAACTTTGGTCTCTAAGGTTATGACTAGG 594
Query 568 AATCCCATTTTTGTCACATCTGATTCACTT-GC-CATTGAGGCTCTTCAGAAGATGGTTC 625
||||| ||||||||||| |||||||| || || | ||||||||||||||||||||||||
Sbjct 595 AATCCTATTTTTGTCACGTCTGATTC-GTTGGCGC-TTGAGGCTCTTCAGAAGATGGTTC 652
Query 626 -AGGGAAAGTTCAGGCACTTGCCTGTTGTAGAGAATGGTGAAGTCATTGCTTTGTTGGAT 684
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AAGGGAAA-TTTAGGCACTTGCCTGTTGTAGAGAATGGTGAAGTCATTGCTTTGTTGGAT 711
Query 685 ATCACAAAGTGTCTCTATGATGCTATCTC-ACGGATGGAAAAAGCTGCAGAGCAAGGAAG 743
|| ||||||||| | ||||||||||| || | ||||||| ||||||||||||||||| ||
Sbjct 712 ATTACAAAGTGTTTGTATGATGCTATTTCTA-GGATGGAGAAAGCTGCAGAGCAAGGCAG 770
Query 744 TGCTTTAGCTA-CTGCAGTGGAAG------A-ACGGCATTGGGGAAGTGGAAACT-T-CG 793
||||||||| | |||||||||||| | | | || |||||||| ||| | | | ||
Sbjct 771 TGCTTTAGC-AGCTGCAGTGGAAGGTGTGGAGAAG-CAATGGGGAAGCGGATATTCTGCG 828
Query 794 C--T-T--T--CATTGATACATTGAGAGAGAGGATGTTCAAGCCTGCATTGTCAACTAT- 845
| | | | |||||| || ||||| ||||| ||||| ||||| || |||||||| ||
Sbjct 829 CCCTATGCTTTCATTGAAACCTTGAGGGAGAGAATGTTTAAGCCCGCCTTGTCAACGATT 888
Query 846 AGTCACTGAGAATACCAAAG-TTGCACTTGTATCAGCATCAGATCCTGTCTT-TGTAGCT 903
| |||| || ||| | |||| ||||||||||| || ||||||||||||| | ||| |||
Sbjct 889 A-TCACAGAAAATTC-AAAGGTTGCACTTGTAGCACCATCAGATCCTGT-TAGTGTTGCT 945
Query 904 TCCAAAAAGATGCGTGATTTGCGGGTTAACTCTGTGATCATCGCGGTTGGGAACAAGATT 963
| ||| |||||| |||||||||||||||||||| ||||| | | |||||||||||
Sbjct 946 GCGAAACGGATGCGAGATTTGCGGGTTAACTCTGTTATCATTTCCATGGGGAACAAGATC 1005
Query 964 CATGGGATTTTAACTTCAAAGGACATTCTCATGAGAGTTGTAGCACAGAATCTATCTCCT 1023
||||| || || ||||||||||||||||| ||| |||| || ||||| ||| || |||||
Sbjct 1006 CATGGAATCTTGACTTCAAAGGACATTCTGATGCGAGTGGTGGCACAAAATTTACCTCCT 1065
Query 1024 GAGCTGACTCTTGTTGAAAAGGTAATGACGCCAAATCCTGAATGTGCATCAATAGAGACA 1083
|| ||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||
Sbjct 1066 GAATTGACTCTTGTTGAGAAGGTAATGACACCGAATCCTGAATGTGCATCGCTAGAGACA 1125
Query 1084 ACAATCCTCGATGCATTGCATATAATGCATGATGGGAAGTT-CTTGCATCTGCCGGTTTT 1142
|| || || ||||| |||||||||||||||||||||||||| || ||||| || || |
Sbjct 1126 ACGATTCTGGATGCGTTGCATATAATGCATGATGGGAAGTTTCTA-CATCTTCCAATTAT 1184
Query 1143 CGATAAAGACGGATTC-GCCGTAGCTTGTTTAGACGTGCTGCAGATAACTCACGCAGCTA 1201
||||||||||||| | || | ||||||| ||||||| || ||||| |||||||||||||
Sbjct 1185 AGATAAAGACGGAT-CAGCTGCAGCTTGTGTAGACGTTCTTCAGATTACTCACGCAGCTA 1243
Query 1202 TATCAACGGTTGAGAACAACAGCTCAGGAGCTGTTAACGATATGGCGAATACAATGATGC 1261
| |||| ||| ||||||| | || |||||||| || ||||||||||| || |||||||
Sbjct 1244 TTTCAATGGTCGAGAACA---GTTCTGGAGCTGTGAATGATATGGCGAACACGATGATGC 1300
Query 1262 A-AAAGTTCTGGGACTCAGCTCTTGCGTTAGAACCACCTGAGGATTAC-GAAACACACAG 1319
| ||| |||||||| ||||||||||||||||| ||||| || |||| | || || || ||
Sbjct 1301 AGAAA-TTCTGGGATTCAGCTCTTGCGTTAGAGCCACCAGATGATT-CTGACACTCAAAG 1358
Query 1320 CGATATGTCAGCAATGCTG-ATAAATTCAGA-A--GGGAAGC--AGT-CGTGTCCATCAC 1372
|| ||||| |||||| || || | |||||| | ||||||| ||| | | ||||| |
Sbjct 1359 TGAAATGTCGGCAATGATGCATCA-TTCAGATATAGGGAAGCTCAGTTCTTACCCATCTC 1417
Query 1373 AAGGACTTGTGAGCTCGTTTGCTTTCAAATTCGAAGATCGTAAAGGGA-GAGTACAGCGG 1431
|||||| | || || ||| | |||||||||||||| | ||| ||| | ||||| |||
Sbjct 1418 TAGGACTCGGGAATTCATTTTCATTCAAATTCGAAGACCTTAA-GGGCCGTGTACATCGG 1476
Query 1432 TTTAACT-CAACTGGTGAGAGTTTTGAAGAGCTGATGAGTGTTGTGATGCAAAGA-TGTG 1489
|||| || | | | ||| | | |||||||||||| || |||||||||||||| | ||
Sbjct 1477 TTTA-CTTCCGCAGCTGAAAACCTCGAAGAGCTGATGGGTATTGTGATGCAAAGAAT-TG 1534
Query 1490 A-AGCG--------GAT-T----CA--GGCCTTCAGATAATGTACCAAGATGATGAAGGT 1533
|||| ||| | || ||||| ||||| || || | || |||||||||
Sbjct 1535 GCAGCGACAACAATGATGTGGAACAACGGCCT-CAGATTATATATGAGGACGATGAAGGT 1593
Query 1534 GATAAAGTTTTGATTAG-TAGGGACAGTGATCTTG-TTGCTGCTGTAACTTTTGCTAGGT 1591
||||| || ||||||| | || |||| ||| ||| ||| |||||| ||| ||||||| |
Sbjct 1594 GATAAGGTATTGATTACATCGG-ACAGCGAT-TTGGTTGGTGCTGTTACTCTTGCTAGAT 1651
Query 1592 CTTTGGGGCAAAAGGTTTTGCGACTACATCTTGATTTTACCGAGACAA 1639
|| || |||||||||||| | || ||||| || || || ||| |||
Sbjct 1652 CTACAGGACAAAAGGTTTTGAGGCTGCATCTGGACTTCACTGAGTCAA 1699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69286155655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5