BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36540.1
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482632 jgi|Araly1|482632|fgenesh2_kg.4__1692__AT2G36540.1 536 8e-152
Ahg931192 jgi|Araly1|931192|scaffold_303649.1 122 3e-27
> Ahg482632 jgi|Araly1|482632|fgenesh2_kg.4__1692__AT2G36540.1
Length=717
Score = 536 bits (290), Expect = 8e-152
Identities = 350/379 (92%), Gaps = 3/379 (1%)
Strand=Plus/Plus
Query 374 GACCAAG-AGAGTGTACGGACAGTGGATATAAAACACTAGAGAACCGTTACAAGCCTTTG 432
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 340 GACCAAGAAGAGTGTACGGACAGTGGATTTAAAACACTAGAGAACCGTTACAAGCCTTTG 399
Query 433 TTCTTTAAGGATCTCTCTAAAGTG-TTCAAGTGCTTTAAAGGCTTCTCTGCTTCAAACAC 491
||||| ||||||||||| |||||| ||| ||||||| |||||||||||||||||||| |
Sbjct 400 TTCTTCAAGGATCTCTCCAAAGTGTTTC-AGTGCTTCAAAGGCTTCTCTGCTTCAAATTC 458
Query 492 CATCTTCATTGATGATGAACCATATAAAGCTCTTCGTAATCCTGACAATACTGGTCTGTT 551
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 459 CATCTTCATTGATGATGAACCCTATAAAGCTCTTCGTAATCCTGACAATACTGGTCTGTT 518
Query 552 CCCAATGAGCTATGATGCTTCTAACATAAAGGATAATTTACTTGATCCGGAAGGAGAGTT 611
|||||||||||||| ||||||||| ||| |||| |||||||||||| |||||||||||
Sbjct 519 TCCAATGAGCTATGACCCTTCTAACAAAAATGATAGTTTACTTGATCCAGAAGGAGAGTT 578
Query 612 GTGTTCTTACTTGGAAGGTTTGGCAAAATCATCGGATGTTCAGGCTTACATAAAAGTGCA 671
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 579 CTGTTCTTACTTGGACGGTTTAGCAAAATCATCGGATGTTCAGGCTTACATAAAAGAGCA 638
Query 672 TTCTTTTGGACGGCCCATGATCGATTCTTCTCATCCTGATTGGTCTTTCTACAGCAACGT 731
|||||||||| ||||| |||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 639 CTCTTTTGGACAGCCCAAGATCGATTCTTCTCATCCCGATTGGTCTTTCTACCGCAAAGT 698
Query 732 TTCAAAGATTGTCTCTTAA 750
|| |||||||||||||||
Sbjct 699 GTCGAAGATTGTCTCTTAA 717
Score = 459 bits (248), Expect = 2e-128
Identities = 316/347 (91%), Gaps = 11/347 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGAAGAAAAGA-TCAAGAAGAGCT-TGC--TTGCTGCGGACGACAGCGACGATGA 56
|||||||||||||| | |||||||||| | | | ||| | | |||||||||||||||||
Sbjct 1 ATGGCTGAAGAAAA-ACTCAAGAAGAG-TAT-CATTTG-TTCCGACGACAGCGACGATGA 56
Query 57 GTACTCAAGAGGTGATACAGTTTCAGATCAGACAGAACTGAGTTCGATTCTTGATAAACT 116
|||||| |||||| || |||||||| |||||||||||||||||||| || | ||||||
Sbjct 57 GTACTC---AGGTGACACTGTTTCAGAGCAGACAGAACTGAGTTCGATCCTGGGTAAACT 113
Query 117 TAGTCTAGAACCTAAGACGGAGAAAAAGAAACTCTTGGTCTTGAGTCTAAGTGGTCTTCT 176
|||| ||||||| ||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 114 TAGTATAGAACCCGAGAAGGAGAAGAAGAAACTCTTGGTCTTGAGTCTAAGTGGTCTTCT 173
Query 177 TCTTCACAGAGTCCACAAAAAAGAGTTGCGTAAGAAACCCAAGAACCGCTCTCCTGATGC 236
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 174 TCTTCACAGAGTCCACATAAAAGAGATGCGTAAGAAACCCAAGAACCGCTCTCCTGATGC 233
Query 237 TTCTTGTGGGCCAAATCTTGTGTATAAGAGACCGTTTGCTGAAGAGTTTATGAAGTTTTG 296
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 234 TTCTTGTGGCCCAAATCTTGTGTATAAGAGGCCATTTGCTGAAGAGTTTATGAAGTTTTG 293
Query 297 TCTTGAGAGATTTGAAGTTGGTATTTGGTCCTCTGCTTGCGAGTTAG 343
|||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 294 TCTTGAGAGATTCGAAGTTGGGATTTGGTCCTCTGCTTGCGAGTTAG 340
> Ahg931192 jgi|Araly1|931192|scaffold_303649.1
Length=480
Score = 122 bits (66), Expect = 3e-27
Identities = 82/90 (91%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 423 CAAGCCTTTGTTCTTTAAGGATCTCTCTAAAGTGTTCAAGTGCTTTAAAGGCTTCTCTGC 482
||||||||||||||||||| |||||||||||||||| ||||||| ||||| | || |||
Sbjct 360 CAAGCCTTTGTTCTTTAAGAATCTCTCTAAAGTGTTTTAGTGCTTCAAAGGGTACTTTGC 419
Query 483 TTCAAACACCATCTTCATTGATGATGAACC 512
|||||||||||||||||||||||||| |||
Sbjct 420 TTCAAACACCATCTTCATTGATGATGGACC 449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27639114825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5