BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36560.1
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482633 jgi|Araly1|482633|fgenesh2_kg.4__1693__AT2G36560.1 1177 0.0
> Ahg482633 jgi|Araly1|482633|fgenesh2_kg.4__1693__AT2G36560.1
Length=1284
Score = 1177 bits (637), Expect = 0.0
Identities = 930/1066 (87%), Gaps = 42/1066 (4%)
Strand=Plus/Plus
Query 92 CGAACTCAACGCCCATCTCTCCCTTTCCGGTCACCAAGACTGCCGAAGCGGCACCAGCCA 151
|||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 5 CGAACTCAACGCCCATCTCTCCCTTTCCGGTCACGGAGACTGCCGCATCGGCACCAGCCA 64
Query 152 CGGTGGTGGAGGGTGTCAACGACGCGAGCAGGAAGAGAGAAAGGCCGAAGACGTA---TC 208
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 65 CGGTGGTGGAGGGTGTCAACGACGCGAGTAGGAAGAGAGAAAGGCCGAAGACGTACGATC 124
Query 209 GTGATTATAAAGGGAGGTTTATCACAGCATCTGGGACATTTACGCCGAGGTCATCGTTGA 268
||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||
Sbjct 125 GTGATTATAAAGGGAGGTTTACCACAAAATCTGGGACATTTACGCCGAGGTCGTCGTTGA 184
Query 269 GGAAGAGGAGAGGTGACATGTCTATGAGGCTTGGAGGAGGGGACTTCACGCCGCATA-GC 327
|||| || |||||||||||||||||| || |||||||||||||||||| |||||||| |
Sbjct 185 GGAACAGAAGAGGTGACATGTCTATGGGGTTTGGAGGAGGGGACTTCAAGCCGCATATG- 243
Query 328 TTCACAGTTAATAAAGGAGAGGATATAATCAAGAGGATCATGTCCTTCACTGCAAATGGT 387
||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 244 TTCACAGTTAACAAAGGAGAGGATATTATCAAGAGGATCATGTCCTTCACTGAAAATGGT 303
Query 388 TCTCGTGGGATCAGTGTTTTGTCAGTAAATGGTGCGGTTGCTAACGTTACGATTCTACCT 447
||||||||||||||||||||||||| ||||||||||||||||||||| | ||||| || |
Sbjct 304 TCTCGTGGGATCAGTGTTTTGTCAGCAAATGGTGCGGTTGCTAACGTCAAGATTCAACTT 363
Query 448 CACGGTTCAAGCCGCAGGGTCATGACGTTTAAGGAGGAGTATGAGATAGTATCGCTGACC 507
||| ||||||||||||||||| |||||| |||||| |||||||||||||||||||||| |
Sbjct 364 CACAGTTCAAGCCGCAGGGTCGTGACGTATAAGGATGAGTATGAGATAGTATCGCTGAGC 423
Query 508 AATAATACAATGGCGATATCTGAGAGCGGAGGAGTGAAAAATAAGACCGGAGGGTGGCGG 567
|||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 424 AATA---CAATGGCGATATCTGAGAGCGGAGGAGTGAAACATAAGACGGGAGGGTGGCGG 480
Query 568 ATTACGATTGGTGGAGCTGCTGGTGGACGTGTCCATGGTGGTGCTTTGGCTGGGAGTCTC 627
|||| ||||||||||||| |||||| | ||||| ||||||| |||||||||||||||||
Sbjct 481 ATTATGATTGGTGGAGCTCCTGGTGCAAGTGTCTTTGGTGGTACTTTGGCTGGGAGTCTC 540
Query 628 ATTGCAGCAAGTCCAGTCCAAGTTGTGATTGGAAGTTTCTGGCCGTTGATCACAAATTCG 687
|||||||||||||| ||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 541 ATTGCAGCAAGTCCTGTCCAAGTTGTGATTGGAAGTTTCTGGCCGTTGGTCTCAAAACCG 600
Query 688 CGTCAGA-AGAGGAAGTATGTGTCCAAAGCTATGGTTGCTCCATCCATAACACCAAACTT 746
| ||||| | ||||| ||||||| ||| | || | | | | || ||||||||||
Sbjct 601 CCTCAGACA-AGGAAATATGTGTTG---GCT-TC-TT-C-C-A-C-AT--CACCAAACTT 647
Query 747 GGTGGCTTCCTCATCCACAAGACCGGTCCAACAACCAGAGATGGTTGGCCCTTCTCACTC 806
||||||||||||||||||| || |||||||||||||| ||| || ||||||||| |||
Sbjct 648 GGTGGCTTCCTCATCCACAGGAAAAGTCCAACAACCAGATATGATTCGCCCTTCTCGCTC 707
Query 807 TCAGAAGAGGAAC-AGCGAGTCCAACAGAACTATGGTTGTTCTTTCAGCC-ACACCACCA 864
||||||||||||| | |||||||||||| ||||||||||| ||||| || ||| |||||
Sbjct 708 TCAGAAGAGGAACGAT-GAGTCCAACAGAGCTATGGTTGTTTTTTCA-CCTACAACACCA 765
Query 865 AACACATTGGCTTCCTCATCCACA-GGACCGGTCCAACAACCAGAGATGGTTGGCCCTTC 923
||| |||||||| ||||||| | |||| | |||| ||||||| ||| ||||||||||
Sbjct 766 AACTTGTTGGCTTCATCATCCA-ATGGACAAGCCCAAGAACCAGATATGATTGGCCCTTC 824
Query 924 TCACTCTCAGAAGAGGAAC-AGTGAGTCCAACAAAACTATGGTTGTTCTTTCAGCCACAC 982
|||||||||| |||||||| | ||||||||||||| ||||||||||| ||||| |||||
Sbjct 825 TCACTCTCAGGAGAGGAACGA-TGAGTCCAACAAAGCTATGGTTGTTTTTTCACCCACAA 883
Query 983 CACCAAACACATTGGCTTCCTCATCCACAGGACCGGTCCAACAACCAGAGATGGTTGGCC 1042
|||||||| ||||||||||| ||||||| || | |||||||||||| ||| ||||||
Sbjct 884 CACCAAACTTGTTGGCTTCCTCCTCCACAGAACAAGACCAACAACCAGATATGATTGGCC 943
Query 1043 CTTCTCACTCTCAGAAGAGGAAC-AGTGAGTCCAACAGAACTACGGTTGTTTTTTC-AGC 1100
||| |||||||||||| |||||| | |||||||||| || | | | | || ||| | |
Sbjct 944 CTTTTCACTCTCAGAACAGGAACGA-TGAGTCCAAC-GA--T--G-T-GATTCTTCTACC 995
Query 1101 CACACCACCAA-ACACATTGGCTTCCTCATCCACAGGACAAGTCCA 1145
|||| || || || |||||||||||||| |||||||||| ||||
Sbjct 996 CACAGTAC-AATACTTATTGGCTTCCTCATTCACAGGACAACTCCA 1040
Score = 527 bits (285), Expect = 1e-148
Identities = 383/430 (89%), Gaps = 8/430 (2%)
Strand=Plus/Plus
Query 977 CCACACCACCAAACACATTGGCTTCCTCATCCACAGGACCGGTCCAACAACCAGAGATGG 1036
||||| |||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 632 CCACATCACCAAACTTGGTGGCTTCCTCATCCACAGGAAAAGTCCAACAACCAGATATGA 691
Query 1037 TTGGCCCTTCTCACTCTCAGAAGAGGAACAG-TGAGTCCAACAGAACTACGGTTGTTTTT 1095
|| ||||||||| |||||||||||||||| | ||||||||||||| ||| ||||||||||
Sbjct 692 TTCGCCCTTCTCGCTCTCAGAAGAGGAAC-GATGAGTCCAACAGAGCTATGGTTGTTTTT 750
Query 1096 TCAGCC-ACACCACCAAACACATTGGCTTCCTCATCCACA-GGACAAGTCCAGGGACCAG 1153
||| || ||| |||||||| |||||||| ||||||| | ||||||| ||| | |||||
Sbjct 751 TCA-CCTACAACACCAAACTTGTTGGCTTCATCATCCA-ATGGACAAGCCCAAGAACCAG 808
Query 1154 ATATGATTGGCCCTTCTCACTCTCAGGAGAAAAAAGATGAGTCCAACAACGCTATGGCTG 1213
|||||||||||||||||||||||||||||| || |||||||||||||| ||||||| ||
Sbjct 809 ATATGATTGGCCCTTCTCACTCTCAGGAGAGGAACGATGAGTCCAACAAAGCTATGGTTG 868
Query 1214 TTTTTTCACCCACAGCACCAAGCTTCTTGGCTTCCTCATCCACAGAACAAGTCCAACAAC 1273
|||||||||||||| |||||| ||| ||||||||||| ||||||||||||| ||||||||
Sbjct 869 TTTTTTCACCCACAACACCAAACTTGTTGGCTTCCTCCTCCACAGAACAAGACCAACAAC 928
Query 1274 CAGATATGATTGGCCCTTATCACTCTCGGCAGAGGAACGATGAGTCCAACGATGTGATTC 1333
|||||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||
Sbjct 929 CAGATATGATTGGCCCTTTTCACTCTCAGAACAGGAACGATGAGTCCAACGATGTGATTC 988
Query 1334 TTCTACCCACAGTTCAATACTTACTGGCTTCCTCATTCACTAG-ACAAGTCCAACGTCAA 1392
||||||||||||| ||||||||| |||||||||||||||| || |||| |||||||||||
Sbjct 989 TTCTACCCACAGTACAATACTTATTGGCTTCCTCATTCAC-AGGACAACTCCAACGTCAA 1047
Query 1393 CCAGAGATGA 1402
||||||||||
Sbjct 1048 CCAGAGATGA 1057
Score = 521 bits (282), Expect = 5e-147
Identities = 566/692 (82%), Gaps = 63/692 (9%)
Strand=Plus/Plus
Query 1100 CCACACCACCAAACACATTGGCTTCCTCATCCACAGGACAAGTCCAGGGACCAGATATGA 1159
||||| |||||||| |||||||||||||||||||| ||||||| |||||||||||
Sbjct 632 CCACATCACCAAACTTGGTGGCTTCCTCATCCACAGGAAAAGTCCAACAACCAGATATGA 691
Query 1160 TTGGCCCTTCTCACTCTCAGGAGAAAAAAGATGAGTCCAACA-ACGCTATGGCTGTTTTT 1218
|| ||||||||| ||||||| ||| || ||||||||||||| | ||||||| |||||||
Sbjct 692 TTCGCCCTTCTCGCTCTCAGAAGAGGAACGATGAGTCCAACAGA-GCTATGGTTGTTTTT 750
Query 1219 TCACCCACAGCACCAAGCTTCTTGGCTTCCTCATCCACA-GAACAAGTCCAACAACCAGA 1277
||||| ||| |||||| ||| |||||||| ||||||| | | ||||| |||| |||||||
Sbjct 751 TCACCTACAACACCAAACTTGTTGGCTTCATCATCCA-ATGGACAAGCCCAAGAACCAGA 809
Query 1278 TATGATTGGCCCTTATCACTCTC-GGCAGAGGAACGATGAGTCCAAC---G--AT-G-TG 1329
|||||||||||||| |||||||| || |||||||||||||||||||| | || | ||
Sbjct 810 TATGATTGGCCCTTCTCACTCTCAGG-AGAGGAACGATGAGTCCAACAAAGCTATGGTTG 868
Query 1330 ATTCTTCTACCCAC-AGTTCAATACTTACTGGCTTCCTCATTCACTAG-ACAAGTCCAAC 1387
|| ||| |||||| | ||| |||| |||||||||| | ||| || ||||| ||||
Sbjct 869 TTTTTTC-ACCCACAACACCAA-ACTTGTTGGCTTCCTCCTCCAC-AGAACAAGACCAA- 924
Query 1388 GTCAACCAGAGATGACAGGCCCTTCTCATTCTCAGAAGAGGAATGATGAGTCGCAA-GCT 1446
|||||||| |||| ||||||| ||| |||||||| ||||| |||||||| ||| | |
Sbjct 925 --CAACCAGATATGATTGGCCCTTTTCACTCTCAGAACAGGAACGATGAGTC-CAACGAT 981
Query 1447 GCGGTT-GT-TACACCAGCAATACCAA-ACTCATTGGCTTCCTCATTCACTGGACAAGTC 1503
| | || | ||| ||| || || ||| ||| |||||||||||||||||| |||||| ||
Sbjct 982 GTGATTCTTCTAC-CCA-CAGTA-CAATACTTATTGGCTTCCTCATTCACAGGACAACTC 1038
Query 1504 CAACGTCAAGCAGAAATGACAGGCCCTTCTCATTCTCAGAAGAGGAACAATGAGTCCCAA 1563
||||||||| | | | | | | | || ||||||| ||||| |||||
Sbjct 1039 CAACGTCAA-C---CA-G--A-G--------A---T--GATGAGGAACGATGAGCCCCAA 1077
Query 1564 GCTGCGGTTGTTACACCTGAAATACCTAACTTATTGGCTTCCTCATTCACCGGACCAGAG 1623
|||| ||||||| |||||| |||||| ||||||||||||||||||||||| |||||||||
Sbjct 1078 GCTGTGGTTGTTCCACCTGGAATACCAAACTTATTGGCTTCCTCATTCACTGGACCAGAG 1137
Query 1624 ATGATAGGACCTTCTCATTCTGAGGAGATGAACGATGAGT-TTAACCCTTCTCAGTTTCT 1682
||||||| ||||||||||||||| || | ||||||||| || ||||||||||||||||
Sbjct 1138 ATGATAGAACCTTCTCATTCTGA-GA-A-CTACGATGAGTCTT-ACCCTTCTCAGTTTCT 1193
Query 1683 GACTCTAGGGTGGTACAGCTCTACACCGGAGCAAGACAAGTAATCTCATCA-AAA----- 1736
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1194 GACTCTAGGGTGGTACAACTCTACACCGGAGCAAGACAAGTAATCTCATCAGAAACTTTT 1253
Query 1737 -AACATTGGACTTCTTAAGTTCATAAAAGTTT 1767
||||||||||| |||||||||||||||||||
Sbjct 1254 TAACATTGGACT-CTTAAGTTCATAAAAGTTT 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66619838505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5