BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36570.1
Length=2308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321364 jgi|Araly1|321364|fgenesh1_pm.C_scaffold_4001421 3147 0.0
> Ahg321364 jgi|Araly1|321364|fgenesh1_pm.C_scaffold_4001421
Length=2025
Score = 3147 bits (1704), Expect = 0.0
Identities = 1916/2019 (95%), Gaps = 11/2019 (1%)
Strand=Plus/Plus
Query 88 atggctgctaaacctcttctt-ct-tcct-cttctcctccttcttcatctctcAATCACC 144
||||||||||||||||||||| || | || || || ||||||||||| ||||||||| ||
Sbjct 1 ATGGCTGCTAAACCTCTTCTTCCTCTTCTCCTCCTTCTCCTTCTTCACCTCTCAATCTCC 60
Query 145 TTAGCTCAAAACGACACAAATGCTCTCACACTCTTCCGTCTCCAAACCGACACACACGGC 204
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTGCTCAAAACGACACAAATGCACTCACACTCTTCCGTCTCCAAACCGACACACACGGC 120
Query 205 AACCTCGCCGGAAACTGGACCGGCTCCGACGCTTGTACCTCCTCATGGCAAGGCGTTTCT 264
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 121 AACCTCGCCGGAAACTGGACCGGCTCCGACGCTTGTTCCTCCTCATGGCACGGCGTTTCT 180
Query 265 TGCTCACCATCTTCACACCGCGTCACTGAACTATCTCTCCCTTCCCTCTCCTTACGAGGA 324
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 181 TGCTCACCATCTTCACACCGCGTCACCGAACTCTCTCTCCCTTCCCTCTCCTTACGAGGA 240
Query 325 CCATTAACCTCTCTCTCCTCCTTAGACCAACTTCGTCTTCTTGACCTCCACGATAACAGA 384
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 241 CCATTAACCTCTCTCTCCTCCTTAGACCAGCTTCGTCTTCTTGATCTCCACGATAACAGA 300
Query 385 CTCAACGGCACCGTTTCACCACTCACAAACTGTAAAAACCTCAGACTCGTTTATCTCGCC 444
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 CTCAACGGCACCGTTTCACCACTCACAAACTGTACAAACCTCAGACTCGTTTATCTCGCC 360
Query 445 GGTAACGATCTCTCCGGTGAGATTCCTAAAGAGATATCCTTTCTTAAACGGATGATACGT 504
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 361 GGTAACGATCTCTCCGGTGAGATTCCTAAAGAGATCTCTTTTCTTAAACGAATGATACGT 420
Query 505 CTTGATCTCTCTGATAACAATATCCGTGGAGTTATACCAAGAGAGATTCTCGGGTTTACC 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTGATCTCTCTGATAACAATATCCGTGGAGTTATACCAAGAGAGATTCTCGGGTTTACC 480
Query 565 CGGGTTTTAACGATCCGGATCCAGAACAATGAGTTAACGGGTCGGATCCCGGATTTTTCT 624
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGGATTTTAACGATCCGGCTCCAGAACAATGAGTTAACGGGTCGGATCCCGGATTTTTCT 540
Query 625 CAGATGAAGTCACTTCTTGAATTGAATGTTTCCTTCAATGAGTTGCACGGAAACGTCTCC 684
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 541 CAGATGAAGTCACTTCTTGAATTGAATGTTTCGTTCAATGAATTGCACGGAAATGTCTCC 600
Query 685 GACGGCGTGGTGAAGAAATTTGGAGACTTGAGCTTTTCCGGTAACGAAGGATTATGCGGG 744
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 GACGGTGTGGTGAAGAAATTTGGAGACTTGAGCTTTTCCGGTAACGAAGGATTGTGCGGG 660
Query 745 TCGGATCCTTTACCGGTTTGTACTATCACAAACGACCCGGAATCTTCTAACACTGATCAG 804
|||||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||
Sbjct 661 TCGGATCCTTTACCGGTTTGTACTTTCACAAATGACCCTGAATCTTCAAACACTGATCAG 720
Query 805 ATTGTTCCGTCGAATCCTACTTCGATTCCGCATTCTCCGGTTAGCGTTAGAGAACCGGAA 864
|||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 721 ATTGTTCCGTCGAATCCTACGTCGATTCCGCATTCTCCGGTTACCGTCGGAGAACCGGAA 780
Query 865 ATTCACAGTCATAGAGGGATTAAACCGGGAATAATCGCTGCGGTTATCGGTGGTTGCGTG 924
|||||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 781 ATTCACGGTCATAGAGGGGTTAAACCGGGAATAATCGCCGCGGTTATCGGCGGTTGTGTG 840
Query 925 GCGGTTATTGTTTTAGTATCTTTTGGTTTTGCTTTCTGTTGTGGAAGATTAGACCGTAAC 984
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 841 GCGGTTATTGTTTTAGTATCTTTCGGTTTTGCTTTCTGTTGTGGAAGATTAGACCGTAGC 900
Query 985 GGCGAA--AG-ATCAAAATCCGGAAGTGTAGAGACTGGTTTCGTCggaggaggagaaggg 1041
|||| || ||||||| ||||||||||||||| ||||||||||||||||| | | |||
Sbjct 901 GGCGGTGGAGGATCAAAACCCGGAAGTGTAGAGAGTGGTTTCGTCGGAGGAG-A-A-GGG 957
Query 1042 aagagacgaagcagttacggagaaggaggagagagTGATGCGACGTCGGCGACAGATAGG 1101
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 958 AAGAGACGAAGCAGCTACGGTGAAGGAGGAGACAGTGATGCGACGTCGGCGACAGATAGG 1017
Query 1102 AGCAGACTTGTGTTTTTCGAGAGGAGGAAACAGTTTGAGCTTGATGATTTGTTGAAAGCA 1161
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1018 AGCAGACTTGTGTTTTTCGAGAGGAGGAAACAGTTTGAGCTTGAGGATTTGTTGAAAGCA 1077
Query 1162 TCTGCGGAGATGCTTGGGAAAGGGAGTTTAGGGACGGTGTACAAGGCGGTG-TTAGACGA 1220
||||||||||||||||||||||| ||| ||||||||||||||||||||||| || |||||
Sbjct 1078 TCTGCGGAGATGCTTGGGAAAGGAAGTCTAGGGACGGTGTACAAGGCGGTGCTT-GACGA 1136
Query 1221 CGGCTCAACGACTGTGGCGGTGAAGCGGCTTAAAGACGCGAATCCATGTCCGAGGAAAGA 1280
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TGGCTCAACAACGGTGGCGGTGAAGCGGCTTAAAGACGCGAATCCATGTCCGAGGAAAGA 1196
Query 1281 GTTTGAGCAGTATATGGAGATTATTGGTAGGCTTAAACACCAAAACGTTGTTAAGCTAAG 1340
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1197 GTTTGAGCAGTACATGGAGATTATTGGTAGGCTTAAACACCAAAACGTTGTTAAGCTCAG 1256
Query 1341 AGCTTATTACTATGCTAAAGAAGAGAAGCTCTTGGTTTATGAGTATCTTCCTAATGGAAG 1400
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1257 AGCTTATTACTACGCTAAAGAAGAGAAGCTCTTAGTTTATGAGTATCTTCCTAATGGAAG 1316
Query 1401 CTTGCACTCTCTTCTTCATGGGAATCGAGGACCAGGACGGATTCCATTGGATTGGACGAC 1460
||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 1317 CTTGCACTCCCTTCTTCATGGGAACCGAGGTCCTGGACGGATTCCATTGGATTGGACGAC 1376
Query 1461 GAGGATTAGTCTAATGTTAGGAGCAGCGAGAGGATTAGCGAAGATTCACGACGAGTATAG 1520
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1377 GAGGATTAGTCTAATGTTAGGAGCAGCGAGAGGCTTAGCAAAGATTCACGACGAGTATAG 1436
Query 1521 CATCTCAAAGATACCACACGGCAATATCAAATCCTCTAATGTTCTATTGGACAGAAACGG 1580
|||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1437 CATCTCAAAGATCCCTCACGGCAACATCAAATCCTCCAATGTTCTATTGGACAGAAACGG 1496
Query 1581 CGTCGCGCTAATAGCTGATTTCGGTTTATCACTTTTGCTAAACCCGGTTCACGCTATCGC 1640
||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1497 CGTCGCGTTAATCGCTGATTTCGGTTTATCACTTTTGCTAAACCCGGTTCATGCTATCGC 1556
Query 1641 TCGGTTAGGAGGATACCGTGCGCCGGAACAGTCGGAGATCAAACGTCTCTCTCAGAAAGC 1700
||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1557 ACGGTTAGGAGGCTACCGTGCGCCGGAACAGTCAGAGATCAAACGGCTCTCTCAGAAAGC 1616
Query 1701 TGACGTGTACAGTTTTGGTGTGTTGCTTCTCGAGGTTTTAACAGGAAAAGCACCCTCGAT 1760
|||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1617 TGACGTGTACAGCTTCGGTGTGTTGCTTCTCGAGGTTTTAACAGGAAAAGCTCCCTCGAT 1676
Query 1761 ATTCCCGTCTCCGTCTAGACCTAGATCAGCGGCGTCGGTGGCTGTGGAGGAAGAGGAAGA 1820
|||||||||||| || ||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 1677 ATTCCCGTCTCCTTCGAGACCTAGATCGGCGGCGTCGGTGGCGGTGGAGGAGGAGGAAGA 1736
Query 1821 AGCGGTGGTTGATTTACCGAAGTGGGTTAGATCGGTGGTGAAGGAGGAATGGACGGCAGA 1880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1737 AGCGGTGGTTGATTTACCGAAGTGGGTTAGATCGGTGGTGAAGGAGGAATGGACGGCGGA 1796
Query 1881 GGTTTTTGATCCGGAGCTTTTGAGGTATAAGAACATAGAGGAGGAGATGGTGGCAATGCT 1940
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 1797 GGTTTTTGATCCGGAGCTTTTGAGGTATAAGAATATTGAGGAGGAGATGGTGGCGATGCT 1856
Query 1941 TCATATCGGTTTAGCTTGCGTTGTGCCTCAGCCGGAGAAGAGGCCGACGATGGCGGAAGT 2000
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 1857 TCATATCGGTTTAGCTTGCGTCGTGCCGCAGCCGGAGAAGAGGCCGACGATGGCGGAGGT 1916
Query 2001 TGTTAAGATGGTTGAGGAGATTAGAGTTGAGCAATCTCCGGTCGGTGAGGATTTTGATGA 2060
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1917 TGTTAAGATGGTTGAGGAGATTAGAGTTGAGCAATCTCCGGTTGGTGAGGATTTTGATGA 1976
Query 2061 GTCACGAAACTCAATGTCTCCGTCGTTGGCTACCACCGA 2099
|||| | ||||||||||| ||||||||||||||||||||
Sbjct 1977 GTCAAGGAACTCAATGTCGCCGTCGTTGGCTACCACCGA 2015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86921939090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5