BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36590.1
Length=1597
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482636 jgi|Araly1|482636|fgenesh2_kg.4__1696__AT2G36590.1 2254 0.0
Ahg483024 jgi|Araly1|483024|fgenesh2_kg.4__2084__AT2G39890.2 1751 0.0
Ahg486008 jgi|Araly1|486008|fgenesh2_kg.5__2000__AT3G55740.1 1086 0.0
> Ahg482636 jgi|Araly1|482636|fgenesh2_kg.4__1696__AT2G36590.1
Length=1513
Score = 2254 bits (1220), Expect = 0.0
Identities = 1395/1479 (94%), Gaps = 13/1479 (1%)
Strand=Plus/Plus
Query 15 TTCAACAACTTCTGATTTCTAAAATCTTTTAAAAATCTCTCCGCCACTTCTAGTTGGACT 74
||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||
Sbjct 1 TTCAACAACTTCTCATTTCTAAAACCTTTTAAAAATCTCTCTACCACTTCTAATTGGACT 60
Query 75 TGATTT----CTCACCATAG-----TCTGTCCCGTTGTTACCGACCATCTATTATATAGG 125
|||||| | |||||||| ||| | || |||||| ||||||||||||||| |||
Sbjct 61 TGATTTCCCACCCACCATAGACTCTTCTTTTCCATTGTTAGCGACCATCTATTATAAAGG 120
Query 126 GAAAGTCTCTTAGCTACAGAGACACAATAACCATTTGGAGAGGTCATGAACTCTAAGAAT 185
||||| ||||||||| |||||||||||||||||||||| || |||||| | ||||||||
Sbjct 121 GAAAGGCTCTTAGCTGCAGAGACACAATAACCATTTGGTGA--TCATGAGCGCTAAGAAT 178
Query 186 CGCATAAACAATGTCGGGGAAGGTGTTGATATCGAAATCCCTGACACTGCTCATCAGATT 245
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 179 CGCATAAACAATGTCGGAGAAGATGTTGATATCGAAATCCCTGACACTGCTCATCAGATA 238
Query 246 AGCAGCGATTCATGGTTTCAGGCAGCGTTCGTTCTGACAACAAGTATAAACAGCGCATAC 305
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 239 AGCCGCGATTCATGGTTTCAGGCAGCGTTCGTTCTGACAACCAGTATAAACAGCGCATAC 298
Query 306 GTGTTGGGATATTCAGGAACAGTCATGGTTCCTTTAGGATGGATTGGTGGTGTGGTTGGT 365
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 299 GTGTTGGGATATTCAGGAACAGTCATGGTTCCTTTAGGATGGACTGGTGGTGTGGTTGGT 358
Query 366 CTTATTCTTGCTACTGCAATCTCACTCTATGCAAACACTCTCGTAGCCAAGCTTCATGAG 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTTATTCTTGCTACTGCAATCTCACTCTATGCAAACACTCTCGTAGCCAAGCTTCATGAG 418
Query 426 TTTGGTGGCAAAAGACACATTCGCTATAGAGACCTTGCGGGATTCATTTACGGTAGAAAG 485
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 419 TTTGGTGGCAAAAGGCACATTCGCTATAGAGACCTCGCGGGGTTCATTTACGGTAGAAAG 478
Query 486 GCTTATTGTCTTACATGGGTGTTGCAATATGTCAATCTTTTCATGATTAATTGTGGTTTC 545
||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |||
Sbjct 479 GCTTATTGTCTTACATGGGTGCTGCAATATGTCAATCTTTTCATGATAAACTGTGGATTC 538
Query 546 ATCATACTAGCTGGTTCCGCCTTAAAGGCTGTTTATGTGCTTTTTAGGGATGATCATGCC 605
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 539 ATCATACTAGCTGGTTCCGCTTTAAAGGCTGTTTATGTGGTTTTTAGGGATGATCATGCC 598
Query 606 ATGAAGTTACCTCATTTTATAGCTATTGCGGGTCTGATTTGTGCGGTTTTTGCTATTGGA 665
||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||
Sbjct 599 ATGAAGTTACCTCATTTTATAGCCATTTCGGGTCTGATTTGTGCGGTTTTTGCGATTGGG 658
Query 666 ATTCCTCATTTGTCGGCTCTTGGGATATGGCTTGCGGTTTCGA-CTATCCTCAGCCTCAT 724
|| |||||||| || ||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct 659 ATACCTCATTTATCTGCTCTTGGGATCTGGCTTGCGGTTTCGATC-ATCCTCAGCCTCAT 717
Query 725 CTATATCGTTGTGGCAATCGTGCTATCGGTTAAAGATGGAGTTAAAGCACCTTCAAGAGA 784
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 718 CTATATCGTTGTGGCAATCGTGTTATCGGTTAAAGATGGAGTTAAAGCACCTTCAAGAGA 777
Query 785 TTACGAGATACAAGGATCACCACTAAGCAAACTTTTTACCATCACTGGAGCAGCCGCTAC 844
||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| ||
Sbjct 778 TTATGAGATACAAGGATCATCTTTAAGCAAACTTTTTACCATCACTGGAGCAGCCGCAAC 837
Query 845 ACTAGTTTTCGTATTCAACACAGGGATGCTTCCAGAAATTCAGGCAACAGTAAAGCAACC 904
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 838 ACTAGTTTTCGTATTCAACACAGGAATGCTTCCAGAAATTCAGGCAACAGTAAGGCAACC 897
Query 905 AGTAGTAAAAAACATGATGAAGGCTCTATACTTTCAATTCACGGTGGGTGTTTTACCGAT 964
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GGTTGTAAAAAACATGATGAAGGCTCTATACTTTCAATTCACGGTGGGTGTTTTACCGAT 957
Query 965 GTTTGCGGTTGTATTCATCGGGTATTGGGCTTACGGATCCTCGACCTCGCCCTATCTACT 1024
|| ||||||||||||||||| |||||||||||||||||||| |||||| | ||||||||
Sbjct 958 GTACGCGGTTGTATTCATCGGATATTGGGCTTACGGATCCTCAACCTCGGCTTATCTACT 1017
Query 1025 AAACAACGTTAATGGTCCACTTTGGGTTAAAGCCCTTGCTAACATCTCCGCTATCCTTCA 1084
||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1018 AAACAACGTTAATGGCCCAGTTTGGGTCAAAGCCCTTGCTAACATCTCCGCTATCCTTCA 1077
Query 1085 ATCCGTTATCTCGTTGCACATTTTTGCAAGTCCAACATATGAGTACATGGACACCAAGTT 1144
|||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1078 ATCCGTTATCTCTTTGCACATTTTTGCAAGTCCAACATATGAGTATATGGACACAAAGTT 1137
Query 1145 TGGGATCAAAGGAAACCCATTGGCATTAAAGAACTTGTTGTTTAGGATCATGGCAAGAGG 1204
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1138 TGGGATCAAAGGAAACCCATTGGCGTTAAAGAACTTGTTGTTTAGGATCATGGCAAGAGG 1197
Query 1205 CGGGTACATAGCAGTTAGTACGCTTCTCTCAGCACTCTTGCCGTTCCTTGGGGACTTCAT 1264
|||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 1198 CGGGTACATAGCGGTTAGTACGCTTCTATCAGCACTCTTACCATTCCTTGGGGACTTCAT 1257
Query 1265 GAGCCTCACTGGTGCAGTGAGCACATTCCCCCTTACATTCATTCTAGCCAACCACATGTA 1324
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1258 GAGCCTCACTGGTGCAGTGAGCACATTCCCTCTCACATTCATTCTAGCCAACCACATGTA 1317
Query 1325 CTATAAGGCTAAGAACAATAAGCTCAATACTTTGCAAAAGCTATGCCATTGGCTCAACGT 1384
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1318 CTATAAGGCTAAGAACAATAAGCTCAATCCTTTGCAAAAGCTATGGCATTGGCTCAACGT 1377
Query 1385 TGTCTTCTTCAGTTTGATGTCTGTTGCTGCCGCCATTGCAGCTCTTAGGCTCATCGCCCT 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TGTCTTCTTCAGTTTGATGTCTGTTGCTGCCGCCATTGCAGCTCTTAGGCTCATCGCCCT 1437
Query 1445 TGACTCCAAAAACTTCCACGTTTTTGCAGATTTGTAATT 1483
||||||||| |||||||||||||||||||||||||||||
Sbjct 1438 TGACTCCAAGAACTTCCACGTTTTTGCAGATTTGTAATT 1476
> Ahg483024 jgi|Araly1|483024|fgenesh2_kg.4__2084__AT2G39890.2
Length=1737
Score = 1751 bits (948), Expect = 0.0
Identities = 1224/1356 (90%), Gaps = 24/1356 (2%)
Strand=Plus/Plus
Query 178 CTAAGAATCGCATAAA-CAATGTC-G-G--GGA-A-G--G-TGTTGATATCGAAATCCCT 227
|||||||||||| ||| ||||||| | | ||| | | | |||||||||||||||||||
Sbjct 298 CTAAGAATCGCA-AAATCAATGTCGGAGATGGAGATGATGTTGTTGATATCGAAATCCCT 356
Query 228 GACACTGCTCATCAGATTAGCAGCGATTCATGGTTTCAGGCAGCGTTCGTTCTGACAACA 287
|||||||||||||| ||||||||||||||||||||||||| ||||| ||| |||| ||
Sbjct 357 GACACTGCTCATCAAATTAGCAGCGATTCATGGTTTCAGGTGGCGTTTGTTTTGACCACC 416
Query 288 AGTATAAACAGCGCATACGTGTTGGGATATTCAGGAACAGTCATGGTTCCTTTAGGATGG 347
||||||||||||| || ||||||||||||||||||||| | |||||||||||||| |||
Sbjct 417 GGTATAAACAGCGCGTATGTGTTGGGATATTCAGGAACAATTATGGTTCCTTTAGGTTGG 476
Query 348 ATTGGTGGTGTGGTTGGTCTTATTCTTGCTACTGCAATCTCACTCTATGCAAACACTCTC 407
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 477 ATTGGTGGTGTGGTTGGTCTTATTCTTGCTACTGCAATCTCTCTTTATGCAAACACTCTC 536
Query 408 GTAGCCAAGCTTCATGAGTTTGGTGGCAAAAGACACATTCGCTATAGAGACCTTGCGGGA 467
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 537 ATAGCTAAGCTTCATGAGTTTGGTGGCAGAAGACACATTCGCTATAGAGACCTTGCTGGA 596
Query 468 TTCATTTACGGTAGAAAGGCTTATTGTCTTACATGGGTG-TTGCAATATGTCAATCTTTT 526
|||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||
Sbjct 597 TTCATTTACGGTAGAAAGGCTTATCATCTTACATGGG-GATTGCAATATGTCAATCTTTT 655
Query 527 CATGATTAATTGTGGTTTCATCATACTAGCTGGTTCCGCCTTAAAGGCTGTTTATGTGCT 586
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 656 CATGATTAATTGTGGATTCATCATCCTAGCTGGTTCCGCCTTGAAGGCTGTTTATGTGCT 715
Query 587 TTTTAGGGATGATCATGCCATGAAGTTACCTCATTTTATAGCTATTGCGGGTCTGATTTG 646
||| |||||||||||| ||||||| |||||||||||||||| ||||| ||| | |||||
Sbjct 716 TTTCAGGGATGATCATACCATGAAACTACCTCATTTTATAGCCATTGCTGGTTTAATTTG 775
Query 647 TGCGGTTTTTGCTATTGGAATTCCTCATTTGTCGGCTCTTGGGATATGGCTTGCGGTTTC 706
|||| |||| || ||||| ||||||||||| |||||||||||| | |||||||| |||||
Sbjct 776 TGCGATTTTCGCGATTGGGATTCCTCATTTATCGGCTCTTGGGGTCTGGCTTGCAGTTTC 835
Query 707 GAC-TATCCTCAGCCTCATCTATATCGTTGTGGCAATCGTGCTATCGGTTAAAGATGGAG 765
||| | ||||||| ||||||||||||||||||||||| |||||||| |||| ||||||||
Sbjct 836 GACCT-TCCTCAGTCTCATCTATATCGTTGTGGCAATTGTGCTATCTGTTAGAGATGGAG 894
Query 766 TTAAAGCACCTTCAAGAGATTACGAGATACAAGGATCACCACTAAGCAAACTTTTTACCA 825
| ||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 895 TAAAAACACCTTCAAGAGATTACGAGATACAAGGATCATCATTAAGCAAACTTTTTACCA 954
Query 826 TCACTGGAGCAGCCGCTACA-CTAGTTTTCGTATTCAACACAGGGATGCTTCCAGAAATT 884
|||| ||||||||||| | | || ||||||| ||||||||| ||||||||||||||||||
Sbjct 955 TCACAGGAGCAGCCGCAA-ATCTGGTTTTCGCATTCAACACCGGGATGCTTCCAGAAATT 1013
Query 885 CAGGCAACAGTAAAGCAACCAGTAGTAAAAAACATGATGAAGGCTCTATACTTTCAATTC 944
||||||||||| | ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1014 CAGGCAACAGTGAGGCAACCAGTTGTTAAAAACATGATGAAGGCTCTATACTTTCAATTC 1073
Query 945 ACGGTGGGTGTTTTACCGATGTTTGCGGTTGTATTCATCGGGTATTGGGCTTACGGATCC 1004
|| | ||||||| ||||||||| ||| ||| ||||||||| ||||||||||||||||||
Sbjct 1074 ACAGCGGGTGTTCTACCGATGTATGCAGTTACATTCATCGGATATTGGGCTTACGGATCC 1133
Query 1005 TCGACCTCGCCCTATCTACTAAACAACGTTAATGGTCCACTTTGGGTTAAAGCCCTTGCT 1064
|| |||||| ||||||||||||||| ||| ||||| ||||| ||||| |||||||||||
Sbjct 1134 TCAACCTCGACCTATCTACTAAACAGCGTCAATGGCCCACTCTGGGTCAAAGCCCTTGCA 1193
Query 1065 AACATCTCCGCTATCCTTCAATCCGTTATCTCGTTGCACATTTTTGCAAGTCCAACATAT 1124
||||||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||||
Sbjct 1194 AACATCTCCGCTATCCTTCAATCTGTTATCTCTTTACACATATTTGCGAGTCCAACATAT 1253
Query 1125 GAGTACATGGACACCAAGTTTGGGATCAAAGGAAACCCATTGGC-ATTAAAGAACTTGTT 1183
|||||||||||||| |||||||||||||||||||||||||| || || ||||||||||||
Sbjct 1254 GAGTACATGGACACAAAGTTTGGGATCAAAGGAAACCCATTTGCGAT-AAAGAACTTGTT 1312
Query 1184 GTTTAGGATCATGGCAAGAGGCGGGTACATAGCAGTTAGTACGCTTCTCTCAGCACTCTT 1243
||||||||||||||| ||||| ||||||||||| ||||| |||||| | ||||| |||||
Sbjct 1313 GTTTAGGATCATGGCGAGAGGAGGGTACATAGCGGTTAGCACGCTTATTTCAGCGCTCTT 1372
Query 1244 GCCGTTCCTTGGGGACTTCATGAGCCTCACTGGTGCAGTGAGCACATTCCCCCTTACATT 1303
|||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 1373 GCCGTTCCTTGGTGACTTCATGAGCCTAACTGGTGCAGTGAGCACATTCCCTCTCACATT 1432
Query 1304 CATTCTAGCCAACCACATGTACTATAAGGCTAAGAACAATAAGCTCAATACTTTGCAAAA 1363
|||| ||||||||||||||||||||||||| |||||||||||||||||| || |||||||
Sbjct 1433 CATTTTAGCCAACCACATGTACTATAAGGCAAAGAACAATAAGCTCAATGCTATGCAAAA 1492
Query 1364 GCTATGCCATTGGCTCAACGTTGTCTTCTTCAGTTTGATGTCTGTTGCTGCCGCCATTGC 1423
|||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1493 GCTATGGCATTGGCTTAACGTGGTCTTCTTCAGTTTGATGTCTGTTGCTGCAGCCATTGC 1552
Query 1424 AGCTCTTAGGCTCATCGCCCTTGACTCCAAAAACTTCCACGTTTTTGCAGATTTGTAATT 1483
|||| | || ||||||||| |||| || ||||||||||| ||||||||||||||||||||
Sbjct 1553 AGCTGTCAGACTCATCGCCGTTGATTCGAAAAACTTCCATGTTTTTGCAGATTTGTAATT 1612
Query 1484 CAT-A-ATATATACTCA-TCGTATTT--ATTCTTAG 1514
||| | ||||||| ||| | |||||| ||||||||
Sbjct 1613 CATTATATATATAGTCAATTGTATTTTTATTCTTAG 1648
> Ahg486008 jgi|Araly1|486008|fgenesh2_kg.5__2000__AT3G55740.1
Length=1622
Score = 1086 bits (588), Expect = 0.0
Identities = 1059/1285 (82%), Gaps = 37/1285 (3%)
Strand=Plus/Plus
Query 210 GTT-GATATCGAAATCCCTGACACTGCTCATCAGATTAGCAGCGATTCATGGTTTCAGGC 268
||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 312 GTTCGATCTCGAAGTCCCTGAGACTGCTCATCAGATTAGCAGCGATTCATGGTTTCAGGT 371
Query 269 AGCGTTCGTTCTGACAACAAGTATAAACAGCGCATACGTGTTGGGATATTCAGGAACAGT 328
||| || ||||| ||||| |||||||||| || || |||||||||||||| || |||||
Sbjct 372 AGCATTTGTTCTAACAACCGGTATAAACAGTGCCTATGTGTTGGGATATTCCGGGACAGT 431
Query 329 CATGGTTCCTTTAGGATGGATTGGTGGTGTGGTTGGTCTTATTCTTGCTACTGCAATCTC 388
|||||||||||| || ||||| ||||||||||||||||| ||||||||||| || |||||
Sbjct 432 CATGGTTCCTTTGGGTTGGATAGGTGGTGTGGTTGGTCTCATTCTTGCTACCGCGATCTC 491
Query 389 ACTCTATGCAAACACTCTCGTAGCCAAGCTTCATGAGTTTGGTGGCAAAAGACACATTCG 448
|| || ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 492 CCTTTACGCAAACACTCTTATCGCCAAGCTTCATGAGTTTGGTGGCAAAAGACACATTCG 551
Query 449 CTATAGAGACCTTGCGGGATTCATTTACGGTAGAAAGGCT-TATTGTCTTACATGGGTG- 506
|||||||| || || || ||||| || |||| |||| | ||| || ||||||||| |
Sbjct 552 TTATAGAGATCTGGCAGGCTTCATCTATGGTAAAAAGA-TGTATCGTGTTACATGGG-GA 609
Query 507 TTGCAATATGTCAATCTTTTCATGATTAATTGTGGTTTCATCATACTAGCTGGTTCCGCC 566
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 610 TTACAATATGTCAATCTTTTCATGATTAATTGTGGCTTCATCATACTTGCTGGTTCCGCC 669
Query 567 TTAAAGGCTGTTTATGTGCTTTTTAGGGATGATCA-TGC-CATGAAGTTACCTCATTTTA 624
||||||||||||||||| |||||||| ||||| || | | |||||| | ||||| ||||
Sbjct 670 TTAAAGGCTGTTTATGTTCTTTTTAGAGATGA-CAGT-CTCATGAAACTGCCTCACTTTA 727
Query 625 TAGCTATTGCGGGTCT-GATTTGTGCGGTTTTTGCTATTGGAATTCCTCATTTGTCGGCT 683
| || || |||||| | | | ||||| |||| || || || ||||||||||| || |||
Sbjct 728 TCGCCATCGCGGGTGTTG-TATGTGCAATTTTCGCAATCGGTATTCCTCATTTATCAGCT 786
Query 684 CTTGGGATATGGCTTGCG-GTTTCGACTATCCTCAGCCTCATCTATATCGTTGTGGCAAT 742
||||| || ||||| | | ||||| || ||||||||| | ||||| || ||||| |||||
Sbjct 787 CTTGGAATCTGGCTAG-GAGTTTCAACAATCCTCAGCATAATCTACATTGTTGTTGCAAT 845
Query 743 CGTGCTATCGGTTAAAGATGGAGTTAAAGCA--CCTTCAAGAGATTACGAGATACAAGGA 800
|| ||||| | |||||||||||| ||| || ||| |||||||||| | |||||||||
Sbjct 846 AGTTCTATCAGCTAAAGATGGAGT-AAA-CAAGCCTGAAAGAGATTACAACATACAAGGA 903
Query 801 TCACCACTAAGCAAACTTTTTACCATCACTGGAGCAGCCGCTACA-CTAGTTTTCGTATT 859
||| || ||| |||||| |||||||| || |||||||| || | | || ||||||| |||
Sbjct 904 TCATCAATAAACAAACTCTTTACCATAACAGGAGCAGCTGCAA-ATCTGGTTTTCGCATT 962
Query 860 CAACACAGGGA-TGCTTCCAGAAATTCAGGCAACAGTAAAGCAACCAGTAGTAAAAAACA 918
|||||| |||| |||| || ||||| ||||||||||| |||||||| || || |||||||
Sbjct 963 CAACAC-GGGAATGCTCCCGGAAATACAGGCAACAGTGAAGCAACCGGTGGTTAAAAACA 1021
Query 919 TGATGAAGGCTCTATACTTTCAATTCACGGTGGGTGTTTTACCGATGTTTGCGGTTGTAT 978
||||||||||||| || ||||||||||| || |||||||||||||||| |||||| ||
Sbjct 1022 TGATGAAGGCTCTGTATTTTCAATTCACTGTTGGTGTTTTACCGATGTACGCGGTTACAT 1081
Query 979 TCATCGGGTATTGGGCTTACGGATCCTCGACCTCGCCCTATCTACTAAACAACGTTAATG 1038
||||||| |||||||||||||| |||||||| ||| | ||||| |||||| ||| | ||
Sbjct 1082 TCATCGGTTATTGGGCTTACGGGTCCTCGACATCGACTTATCTGTTAAACAGCGTCAGTG 1141
Query 1039 GTCCACTTTGGGTTAAAGCCCTTGCTAACATCTCCGCTATCCTTCAATCCGTTATCTCGT 1098
| || || ||||| |||||||| |||||||| || ||| | || ||||| |||||||| |
Sbjct 1142 GACCTCTCTGGGTCAAAGCCCTCGCTAACATTTCAGCTTTTCTCCAATCTGTTATCTCTT 1201
Query 1099 TGCACATTTTTGCAAGTCCAACATATGAGTACATGGACACCAAGTTTGG-GATCAAAGGA 1157
| || |||||||||||||| || |||||||| |||||||| |||| ||| | ||||||||
Sbjct 1202 TACATATTTTTGCAAGTCCGACTTATGAGTATATGGACACAAAGTATGGAG-TCAAAGGA 1260
Query 1158 AACCCATTGGCATTAAAGAA-CTTGTTGTTTAGGATCA-TGGCAAGAGGCGGGTACATAG 1215
| ||||| ||||| ||||| || ||||||||| | || | ||| |||| | ||||| |
Sbjct 1261 AGTCCATTAGCATTGAAGAATCT-GTTGTTTAGAA-CAGTAGCACGAGGAAGCTACATCG 1318
Query 1216 CAGTTAGTACGCTTCTCTCAGCACTCTTGCCGTTCCTTGGGGACTTCATGAGCCTCACTG 1275
| || || || |||||||| || || |||||||| || || || |||||||||||||| |
Sbjct 1319 CGGTAAGCACACTTCTCTCTGCGCTTTTGCCGTTTCTCGGAGATTTCATGAGCCTCACCG 1378
Query 1276 GTGC-AGTGAGCACATTCCCCCTTACATTCAT-TCTAGCCAACCACATGTA-CTATAAGG 1332
| || | | ||||| ||||| || |||||||| | |||| || |||||||| || | |
Sbjct 1379 GAGCTA-TAAGCACGTTCCCTCTCACATTCATAT-TAGCGAATCACATGTATCT-TGTTG 1435
Query 1333 CTAAGAACAATAAGCTCAATACTT-TGCAAAAGCTATGCCATTGGCTCAACGTT-GTCTT 1390
||| |||| ||||||| | | ||| ||||||||||||| |||||||| || ||| | | |
Sbjct 1436 CTATGAACGATAAGCTTAGT-CTTGTGCAAAAGCTATGGCATTGGCTTAATGTTTG-CGT 1493
Query 1391 CTTCAGTTTGATGTCTGTTGCTGCCGCCATTGCAGCTCTTAGGCTCATCGCCCTTGACTC 1450
||| | || |||||| ||||||| || ||||| ||| |||| |||||| | |||| ||
Sbjct 1494 CTTTGGATTAATGTCTCTTGCTGCTGCTATTGCTGCTGTTAGACTCATCTCTGTTGATTC 1553
Query 1451 CAAAAACTTCCACGTTTTTGCAGAT 1475
||| |||||||| |||||||| |||
Sbjct 1554 CAAGAACTTCCATGTTTTTGCTGAT 1578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839774895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5