BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36610.1
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901513 jgi|Araly1|901513|Al_scaffold_0004_2163 693 0.0
> Ahg901513 jgi|Araly1|901513|Al_scaffold_0004_2163
Length=540
Score = 693 bits (375), Expect = 0.0
Identities = 507/565 (90%), Gaps = 32/565 (6%)
Strand=Plus/Plus
Query 1 ATGGAATATTGGAGCAGCTCCTTCATCGATGGCGCGTCTTCTTCCAGCTTCATCTCTCCT 60
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1 ATGGAATATTGGAGCAGCTCCTTCATCGATGGCGCTTCTTCTTCCAACTTCATCTCTCCT 60
Query 61 TTCTATAACTTTGACCATTTTTCAGGAAACCAAGACAACAGATGT-T-T----AGGTACA 114
||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 61 TTCTATAACTTTGACCATTTTTCAGGAAACCAAGACAACAGATGTCTCTCGTCAGGTACT 120
Query 115 ATGATGGGTGCACAACAAGATATACTTCATGTTCC-TCTAGCAATGGTAGAGAGTGGCTA 173
||| || |||||||||||||||| |||||| |||| ||||||||||||||||||||||||
Sbjct 121 ATGGTGAGTGCACAACAAGATATGCTTCAT-TTCCCTCTAGCAATGGTAGAGAGTGGCTA 179
Query 174 TGGAGAAGAAAGCAACAGTTTTAATGGACAGGAGAAGaaaaaaaaGAAGATGACGAGCGA 233
|||||||||||||||||||||||||||| | ||||||| ||| |||||||||||||||||
Sbjct 180 TGGAGAAGAAAGCAACAGTTTTAATGGAAAAGAGAAGAGAAAGAAGAAGATGACGAGCGA 239
Query 234 GCAGCTAAAGTTCCTCGAGAGAAGTTTCCAAGAAGAGATAAAGCTGAATCCGGACAGGAA 293
||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 240 GCAACTAAAGTTCCTCGAGACAAGTTTCCAAGAAGAGATAAAGCTTAATCCGGACAGGAA 299
Query 294 GATGAAGCTGAATCCGGACAGGAAGATGAAGCTGTCCAAAGAACTGGGGCTGCAGCCGAG 353
|||||||||| ||| | | | || || | | | || |||||||||||
Sbjct 300 GATGAAGCTG--TCC--A-A--A-GA--AA--T--C----G----GG--CTGCAGCCGAG 335
Query 354 ACAGATTGCGGTTTGGTTCCAGAACAGGAAAGCCAGGTGGAAGAACAAACAACTTGAGCA 413
||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 336 ACAGATTGCGGTTTGGTTCCAAAACAGGAAAGCCAGGTGGAAGAACAAACAGCTCGAGCA 395
Query 414 TCTCTATGAATCACTAAGACAAGAGTTTGATATTGTCTCTAGAGAAAAGGAATTGCTACA 473
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 396 TCTCTATGAATCACTAAGGCAAGAGTTTGATGTTGTCTCTAGAGAAAAGGAATTGCTACA 455
Query 474 AGAAGAGCTAATACAACTGAAATCAATGATAAGAGAGGATAGTTCATGCAAGAAGAAACA 533
||||||||||| |||||||||||| |||||||| ||| || ||||| |||||||||| ||
Sbjct 456 AGAAGAGCTAACACAACTGAAATCGATGATAAGGGAGAATGGTTCAAGCAAGAAGAAGCA 515
Query 534 AACCTGGGAAAAAGCCTGCAGCTGA 558
||||||||||||| |||||||||||
Sbjct 516 AACCTGGGAAAAAACCTGCAGCTGA 540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20375084526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5