BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36620.1
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482640 jgi|Araly1|482640|fgenesh2_kg.4__1700__AT2G36620.1 1050 0.0
Ahg485677 jgi|Araly1|485677|fgenesh2_kg.5__1669__AT3G53020.1 481 4e-135
> Ahg482640 jgi|Araly1|482640|fgenesh2_kg.4__1700__AT2G36620.1
Length=729
Score = 1050 bits (568), Expect = 0.0
Identities = 695/751 (93%), Gaps = 30/751 (4%)
Strand=Plus/Plus
Query 35 AGATTTTTTAGGGTTTCAAGTGAAAAGAGTAA-TAGCGCGGCGGAGCCATGGTTCTCAAG 93
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AGATTTTTTAGGGTTTCGAGTGAAAAGAGTAACAAGCGCGGCGGAGCCATGGTTCTCAAG 60
Query 94 ACTGAGCTTTGCCGATTCAGTGGCCAGAAAATTTACCCTGGTAGAGGGATCAGATTTATC 153
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 61 ACTGAGCTTTGCCGATTCAGTGGTCAGAAGATTTACCCTGGTAGAGGAATCAGATTTATC 120
Query 154 CGATCGGACTCTCAGGTGTTTTTGTTT-CTCAACTCCAAATGTAAGAGGTATTTCCACAA 212
||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 121 CGATCCGACTCTCAGGTGTTTTTGTTTGC-CAACTCCAAATGTAAGAGGTATTTCCACAA 179
Query 213 CAAGTTGAAGCCATCTAAGCTTTGC-TGGACTGCTATGTACCGAAAGCAGCACAAGAAGG 271
|||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 180 CAAGTTGAAGCCATCTAAGC-TTACATGGACTGCTATGTACCGAAAGCAGCACAAGAAGG 238
Query 272 ACGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCAACTAAGAAGCCTTACTCAAGGT 331
||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 239 ACGCAGCACAAGAGGCTGTCAAGAGAAGGAGACGTGCTACCAAGAAGCCTTACTCAAGGT 298
Query 332 CGATTGTCGGTGCTACTTTGGAGGTTATTCAGAAGAAGCGAGCAGAGAAGCCTGAAGTTC 391
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 299 CGATTGTTGGTGCTACTTTGGAGGTTATTCAGAAGAAGCGTGCAGAGAAGCCCGAAGTTC 358
Query 392 GTGATGCCGCTAGAGAAGCTGCCCTACGTGAGATCAAGGAGAGAATCAAGAAGACCAAGG 451
||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 359 GTGATGCAGCCAGAGAAGCTGCACTACGTGAGATAAAGGAGAGAATCAAGAAGACCAAGG 418
Query 452 ACGAGAAGAAGGCAAAGAAGGTCGAGTATGCATCAAAGCAACAGAAGTCACAAGTGAAGG 511
||||||||||||| ||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 419 ACGAGAAGAAGGCTAAGAAGGTCGAGTATTCTTCCAAGCAACAGAAGTCACAAGTGAAGG 478
Query 512 GAAATATCCCCAAGAGTGCTGCACCCAAGGCTGCTAAGATGGGTGGTGGTGGAGGCAGAC 571
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 479 GAAATATCCCCAAGAGTACTGCACCCAAGGCTGCTAAGATGGGCGGTGGTGGAGGCAGAC 538
Query 572 GTTGAATGGAGCTATAGAGTAGCCCACtcttctctcttcacttatctttctttcttgttt 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTTGAATGGAGCTATAGAGTAGCCCACTCTTCTCTCTTCACTTATCTTTCTTTCTTGTTT 598
Query 632 tgacattgttttgttttgtcagccattttttagttttgCACCAGATCTAATATATTCAGT 691
||||||| |||| || || |||| | ||||||||||||||||||||||
Sbjct 599 TGACATT-TTTT-TT-----AG---TTTT---G-----CACCAGATCTAATATATTCAGT 640
Query 692 TTATGAAAACTTTTTGTTTGGT-ATCAATCCCCTTGTGTTTT--ACTCGT-AGATCCAAA 747
|||||||||||||||||||||| |||||| ||||||||||| |||||| | |||||||
Sbjct 641 TTATGAAAACTTTTTGTTTGGTTATCAATTACCTTGTGTTTTTTACTCGTGATATCCAAA 700
Query 748 AACTGCTAAATAGAATTT-TCAACTTGGCTT 777
|||||| ||||||||||| | ||||||||||
Sbjct 701 AACTGC-AAATAGAATTTGT-AACTTGGCTT 729
> Ahg485677 jgi|Araly1|485677|fgenesh2_kg.5__1669__AT3G53020.1
Length=695
Score = 481 bits (260), Expect = 4e-135
Identities = 415/488 (85%), Gaps = 17/488 (3%)
Strand=Plus/Plus
Query 97 GAGCTTTGCCGATTCAGTGGCCAGAAAATTTACCCTGGTAGAGGGATCAGATTTATCCGA 156
|||||||| || |||||||||||||| |||||||| || ||||| || || |||||||||
Sbjct 4 GAGCTTTGTCGTTTCAGTGGCCAGAAGATTTACCCAGGAAGAGGAATTAGGTTTATCCGA 63
Query 157 TCGGACTCTCAGGTGTTT-TTGTTT-CTCAACTCCAAA-TGTAAGAGGTATTTCCACAAC 213
|| || |||||||| ||| |||||| || |||| |||| ||||||||||| ||||| |||
Sbjct 64 TCTGATTCTCAGGT-TTTCTTGTTTGCT-AACT-CAAAGTGTAAGAGGTACTTCCATAAC 120
Query 214 AAGTTGAAGCCATCTAAGCTTTGC-TGGACTGCTATGTACCGAAAGCAGCACAAGAAGGA 272
|||||||||||||| |||| || | |||||||| |||||| ||||||| |||||||||||
Sbjct 121 AAGTTGAAGCCATCCAAGC-TTACATGGACTGCCATGTACAGAAAGCAACACAAGAAGGA 179
Query 273 CGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCAACTAAGAAGCCTTACTCAAGGTC 332
||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 180 TGCAGCGCAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTC 239
Query 333 GATTGTCGGTGCTACTTTGGAGGTTATTCAGAAGAAGCGAGCAGAGAAGCCTGAAGTTCG 392
||||| |||||||| |||||||| |||||||||||| |||| |||||||||||||||||
Sbjct 240 CATTGTTGGTGCTACCTTGGAGGTGATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCG 299
Query 393 TGATGCCGCTAGAGAAGCTGCCCTACGTGAGATCAAGGAGAGAATCAAGAAGACCAAGGA 452
|||||| || ||||||||||| || |||||||||||||| ||||| || |||||||| ||
Sbjct 300 TGATGCTGCCAGAGAAGCTGCTCTGCGTGAGATCAAGGAAAGAATTAAAAAGACCAAAGA 359
Query 453 CGAGAAGAAGGCAAAGAAGGTCGAGTATGCATCAAAGCAACAGAAGTCACAAGTGAAGGG 512
|| |||||||| |||||||| || | ||| || |||||||||||| |||||||
Sbjct 360 TGAAAAGAAGGCTAAGAAGGTGGAATTTGCTTCTAAGCAACAGAAG------GTGAAGGC 413
Query 513 AAATATCCCCAA-GA-G-TGCTGCACCCAAGGCTGCTAAGATGGGTGGTGGTGGAGGCAG 569
||| ||||||| | | ||||||| |||||| | ||||| |||| |||||||| ||||
Sbjct 414 TAATTTCCCCAAAGCTGCTGCTGCATCCAAGGGTCCTAAGTTGGGAGGTGGTGGTGGCAA 473
Query 570 ACGTTGAA 577
||| ||||
Sbjct 474 ACGCTGAA 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28668433584
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5