BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36640.1
Length=1592
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482642 jgi|Araly1|482642|fgenesh2_kg.4__1702__AT2G36640.1 1930 0.0
> Ahg482642 jgi|Araly1|482642|fgenesh2_kg.4__1702__AT2G36640.1
Length=1392
Score = 1930 bits (1045), Expect = 0.0
Identities = 1292/1410 (92%), Gaps = 21/1410 (1%)
Strand=Plus/Plus
Query 37 TTTCAAGCAATCGAGAAAAAAGCAATGGCGTCAGACAAACAAAAGGCGGAGAGAGCCGAG 96
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1 TTTCAAGCAATCGAGGAAAAAGCAATGGCGTCAGACCAACAAAAGGCGGAGAGAGCTGAG 60
Query 97 GTTGCGGCGAGGCTAGCGGCTGAGGACTTGCATGACATTAACAAATCCGGTGGTGCTGAT 156
|||||||||||| | |||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 61 GTTGCGGCGAGGGTCGCGGCTGAGGACTTGCATGACATTAACAAATCTGGTGGTGGTGAT 120
Query 157 GTCACAATGTATAAGGTGACGGAGAGAACAACTGAACATCCACCGGAGCAAGATAGGCCC 216
|||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 121 GTCACAATGTATAAGGTGACGGAGAGAACAACGGAACATCCACCGGAGCAGGAGAGGCCC 180
Query 217 GGTGTGATAGGATCAGTGTTCAGGGCTGTCCAAGGAACGTATGAGCATGCGAGAGACGCT 276
||||| |||||||| ||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 181 GGTGTAATAGGATCGGTGTTCAGGGCTGTCCAAGGAACATATGAGCACGCTAGAGACGCT 240
Query 277 GTAGTTGGAAAAACCCACGAAGCGGCTGAGTCTACCAAAGAAGGAGCTCAGATAGCTTCA 336
|||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||
Sbjct 241 GTAGTTGGAAAAACCCACGATGCGGCCGAGTCGACCAAAGAAGGAGCTCAGATAGCCTCA 300
Query 337 GAGAAAGCGGTTGGAGCAAAGGACGCAACCGTCGAGAAAGCTAAGGAAACCGCTGATTAT 396
||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||
Sbjct 301 GAGAAAGCGGTTGGAGCAAAGGATGCAACCGTCGAGAAGGCTAGGGATACCGCTGATTAT 360
Query 397 ACTGCGGAGAAGGTGGGTGAGTATAAAGACTATACGGTTGATAAAGCTAAAGAGGCTAAG 456
|| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACGGCGGACAAGATGGGTGAGTATAAAGACTATACGGTTGATAAAGCTAAAGAGGCTAAG 420
Query 457 GACACA-ACTGCAGAGAAGGCGAAGGAGACTGCTAA-TTATACTGCGGATAAGGCGGTGG 514
|||| | |||||||||||||| |||||||| || || |||||| ||||||||||||||||
Sbjct 421 GACA-AGACTGCAGAGAAGGCAAAGGAGACCGC-AAGTTATACCGCGGATAAGGCGGTGG 478
Query 515 AAGCAAAGGATAAGACGGCGGAGAAGATTGGTGAGTACAAAGACTATGCGGTGGATAAGG 574
|||||||||| |||| |||||||||||| ||||| || || |||||||||||| ||||||
Sbjct 479 AAGCAAAGGACAAGAAGGCGGAGAAGATGGGTGAATATAAGGACTATGCGGTGTATAAGG 538
Query 575 CAGTAGAAGCTAAAGATAAGACAGCGGAGAAGGCGAAGGAGACTGCGAATTATACGGCGG 634
|||||||||| || |||||| | | | || |||||||||||||||||||||||
Sbjct 539 CAGTAGAAGCGAAGGATAAG--A-C-----A-GC---GGAGACTGCGAATTATACGGCGG 586
Query 635 ATAAGGCTAAAGAGGCTAAGGACAAGACGGCTGAGAAGGTTGGTGAGTATAAGGATTACA 694
||||||||||||||||||||||||| || ||||||||| | |||||||||||||||||||
Sbjct 587 ATAAGGCTAAAGAGGCTAAGGACAAAACCGCTGAGAAGATGGGTGAGTATAAGGATTACA 646
Query 695 CGGTGGACAAGGCCGTGGAAGCTAGGGATTACACAGCGGAGAAGGCTATTGAAGCAAAGG 754
||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 647 CGGTGGACAAGGCTGTGGAAGCTAAGGATTACACAGCAGAGAAGGCTATTGAAGCAAAGG 706
Query 755 ATAAGACAGCTGAGAAGACTGGAGAGTATAAGGACTATACGGTGGAGAAGGCGACGGAGG 814
||||||| || || ||| | |||||||||||||| |||||||||||||||| ||| ||||
Sbjct 707 ATAAGACTGCGGATAAGGCCGGAGAGTATAAGGATTATACGGTGGAGAAGGGGACTGAGG 766
Query 815 GGAAAGATGTTACGGTGAGTAAGCTAGGAGAGCTGAAGGATAGTGCCGTTGAGACAGCGA 874
| ||||||||| |||||||||||| |||||| ||||||||||||| || || ||||| |
Sbjct 767 GAAAAGATGTTGGGGTGAGTAAGCTTGGAGAGTTGAAGGATAGTGCGGTGGAAACAGCAA 826
Query 875 AGAGAGCTATGGGTTTCTTGTCGGGGAAGACAGAGGAGGCCAAAGGAAAAGCTGTGGAGA 934
|||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 827 AGAGAGCTATGGATTTCTTGTCTGGGAAGACAGAGGAGGCCAAAGAAAAAGCTGTGGAGA 886
Query 935 CCAAAGATACTGCCAAGGAAAACATGGAGAAAGCTGGAGAAGTAACAAGACAAAAGATGG 994
||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 887 CCAAAGACACTGCCAAGGAAAACATTGAGAAAGCTGGAGAAGTAACGAGGCAAAAGATGG 946
Query 995 AGGAAATGAGATTGGAAGGTAAAGAGCTCAAAGAAGAAGCTGGAGCAAAAGCCCAAGAGG 1054
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||
Sbjct 947 AGGAAATGAGATTGGAAGGTAAAGAACTCAAAGACGAAGCTGGAGCAAAGGCCCACGAGG 1006
Query 1055 CATCTCAAAAGACTAGGGAGAGTACTGAGTCGGGAGCTCAAAAAGCCGAAGAGACCAAAG 1114
|||||||||||||||||||||||||||| |||| ||| |||||||| ||||||||||||
Sbjct 1007 CATCTCAAAAGACTAGGGAGAGTACTGACTCGGCTGCTGAAAAAGCCCAAGAGACCAAAG 1066
Query 1115 ATTCTGCTGCCGTGAGGGGAAATGAAGCGAAAGG-GACTATTTTTGGTGCATTAGGGAAT 1173
||||||||||||| ||||| |||||||| ||||| |||||| ||||| |||||||||||
Sbjct 1067 ATTCTGCTGCCGTTAGGGGCAATGAAGC-AAAGGTGACTATACTTGGTACATTAGGGAAT 1125
Query 1174 GTAACGGAAGCAATAAAGAGCAAACTGACAATGCCATCAGACATTGTGGAGGAAACACGC 1233
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1126 GTAACGGAAGCCATAAAGAGCAAACTGACGATGCCATCAGACATTGTGGAGGAGACACGA 1185
Query 1234 GCGGCACGTGAGCATGGAGGGACGGGTAGGACTGTGGTTGAAGTCAAGGTCGAGGATTCA 1293
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| ||
Sbjct 1186 GCGGCACGTGAGCATGGAGGCACGGGTAGGACGGTGGTTGAAGTCAAGGTCGAAGATACA 1245
Query 1294 AAGCCGGGTAAGGTGGCGACTTCACTGAAGGCGTCGGATCAAATGACCGGTCAAACATTC 1353
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1246 AAGCCGGGTAAGGTGGCGACTTCACTGAAAGCGTCGGATCAAATGACCGGTCAAACATTC 1305
Query 1354 AACGACGTTGGACGGATGGATGATGATGCTCGGAAAGATAAGGGAAAGCTGTGAGAATAC 1413
||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 1306 AACGATGTTGGACGGATGGATGATGGCGCTCGGAAAGATAAGGGAAAGCTCTGAGA-TAC 1364
Query 1414 TAGAAAAATGACAAtgttttttgggccttt 1443
||||||| ||||| ||||||||||| ||||
Sbjct 1365 TAGAAAA-TGACA-TGTTTTTTGGGTCTTT 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59649323670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5